UBERON:0004905: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004905
|name=joint
|namespace=
|def="anatomical cluster that connects limbs or skeletal elements." []
|xref=FBbt:00004645;;SCTID:302536002
|is_a=UBE...") |
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Revision as of 17:21, 15 June 2012
| Name: | joint | ||
|---|---|---|---|
| Definition: | "anatomical cluster that connects limbs or skeletal elements." [] | ||
| Xrefs: |
| ||
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|
Children
| is a: | UBERON:0000982 (skeletal joint) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10267-104D6
- 10295-104G7 (cruciate ligament, donor2)
- 10323-105A8
- 10441-106E9 (synovial sarcoma cell line:HS-SY-II)
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11252-116F1 (Nucleus Pulposus Cell, donor1)
- 11291-117A4 (Synoviocyte, donor1)
- 11368-117I9 (Synoviocyte, donor2)
- 11409-118E5 (Nucleus Pulposus Cell, donor2)
- 11440-118H9 (Synoviocyte, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004905 (joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.05e-102 | FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_567b588d0a967b8617a1ce918bf0d94f | p@chr3:174737010..174737023, + |
| 5.05e-102 | FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_567b588d0a967b8617a1ce918bf0d94f | p@chr3:174737010..174737023, + |
| 6.68e-88 | FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_c89babbca9e96845e4367e95a5d77826 | p4@PAX1 |
| 6.68e-88 | FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_c89babbca9e96845e4367e95a5d77826 | p4@PAX1 |
| 5.7e-81 | FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_1c1bf36599a61bb67d97e2ba59558431 | p15@SNED1 |
| 5.7e-81 | FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_1c1bf36599a61bb67d97e2ba59558431 | p15@SNED1 |
| 3.87e-62 | FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_88bc4a3195026450c0e08f80f7c8874b | p@chr5:30104176..30104187, - |
| 3.87e-62 | FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_88bc4a3195026450c0e08f80f7c8874b | p@chr5:30104176..30104187, - |
| 5.39e-52 | FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_6c683246e17c209d0870fedc45e39db3 | p1@ENST00000436845 |
| 5.39e-52 | FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_6c683246e17c209d0870fedc45e39db3 | p1@ENST00000436845 |
| 5.25e-50 | FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_bef5d061d0f3b554313410b724e2842d | p6@SIX4 |
| 5.25e-50 | FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_bef5d061d0f3b554313410b724e2842d | p6@SIX4 |
| 1.71e-49 | FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_3b5f2ff51a00575a1ac94cad2f4d3a9e | p4@NKX3-2 |
| 1.71e-49 | FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_3b5f2ff51a00575a1ac94cad2f4d3a9e | p4@NKX3-2 |
| 4.01e-47 | FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_ada6dcb0cd784958bbc1b9fa2cac3049 | p@chr5:140887761..140887777, + |
| 4.01e-47 | FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_ada6dcb0cd784958bbc1b9fa2cac3049 | p@chr5:140887761..140887777, + |
| 3.73e-45 | FFCP PHASE2:Hg19::chr2:242009429..242009432,+#_f66bf709d7343c3f7430bb72763608f2 | p@chr2:242009429..242009432, + |
| 3.73e-45 | FFCP PHASE1:Hg19::chr2:242009429..242009432,+#_f66bf709d7343c3f7430bb72763608f2 | p@chr2:242009429..242009432, + |
| 5.04e-45 | FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_fef2d8097403927e22f25d870bee5e91 | p@chr9:114135497..114135526, - |
| 5.04e-45 | FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_fef2d8097403927e22f25d870bee5e91 | p@chr9:114135497..114135526, - |
| 1.45e-44 | FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_3b898eba52515cb8908e232930ce952a | p@chr2:241897125..241897142, - |
| 1.45e-44 | FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_3b898eba52515cb8908e232930ce952a | p@chr2:241897125..241897142, - |
| 5.55e-44 | FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_9d8caf886b1ba2f0ab6dcb82cef0c4e5 | p@chr3:80727046..80727051, - |
| 5.55e-44 | FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_9d8caf886b1ba2f0ab6dcb82cef0c4e5 | p@chr3:80727046..80727051, - |
| 5.66e-42 | FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_a879895b0685a5c08fc99d91c9489341 | p@chr7:100202784..100202796, - |
| 5.66e-42 | FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_a879895b0685a5c08fc99d91c9489341 | p@chr7:100202784..100202796, - |
| 9.63e-42 | FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_7030a19be5415122ae0d3e89f35a93f5 | p20@CAPZB |
| 9.63e-42 | FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_7030a19be5415122ae0d3e89f35a93f5 | p20@CAPZB |
| 2.13e-39 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_9c69c6bbdbca1a3607d933f8756a6b80 | p@chr1:19778678..19778689, - |
| 2.13e-39 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_9c69c6bbdbca1a3607d933f8756a6b80 | p@chr1:19778678..19778689, - |
| 1.04e-37 | FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_61b6698e82d02db6cb6edeb2079ecf17 | p@chr2:241897189..241897221, - |
| 1.04e-37 | FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_61b6698e82d02db6cb6edeb2079ecf17 | p@chr2:241897189..241897221, - |
| 1.51e-37 | FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_d5450222d393ec5655d818fa48dc2f6e | p22@SNED1 |
| 1.51e-37 | FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_d5450222d393ec5655d818fa48dc2f6e | p22@SNED1 |
| 3.4e-36 | FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_e6ef11d4dcc4f36b28cf74eeccff0c03 | p1@uc010aki.1 |
| 3.4e-36 | FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_e6ef11d4dcc4f36b28cf74eeccff0c03 | p1@uc010aki.1 |
| 6.5e-34 | FFCP PHASE1:Hg19::chr7:80546293..80546302,-#_64cae23e75291ad9ced40449cb8e82c8 | p31@SEMA3C |
| 6.5e-34 | FFCP PHASE2:Hg19::chr7:80546293..80546302,-#_64cae23e75291ad9ced40449cb8e82c8 | p31@SEMA3C |
| 9.08e-34 | FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_0ef087288adf8fb639309406be12e98f | p3@uc010aki.1 |
| 9.08e-34 | FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_0ef087288adf8fb639309406be12e98f | p3@uc010aki.1 |
| 1.15e-32 | FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_491a94c91be424e61d8326557c17cda3 | p3@PAX1 |
| 1.15e-32 | FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_491a94c91be424e61d8326557c17cda3 | p3@PAX1 |
| 1.77e-32 | FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_b43c3bc0375ca760283e44c6c4c10ea5 | p@chr10:81923378..81923389, - |
| 1.77e-32 | FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_b43c3bc0375ca760283e44c6c4c10ea5 | p@chr10:81923378..81923389, - |
| 2.19e-32 | FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_d99d88de4cc4f844c6509c7f9a31d405 | p@chr2:12248310..12248334, - |
| 2.19e-32 | FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_d99d88de4cc4f844c6509c7f9a31d405 | p@chr2:12248310..12248334, - |
| 8.44e-32 | FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_a09fc752e8c8b45003e4642c9ecb5df0 | p19@HDAC9 |
| 8.44e-32 | FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_a09fc752e8c8b45003e4642c9ecb5df0 | p19@HDAC9 |
| 3.34e-31 | FFCP PHASE2:Hg19::chr20:43343610..43343645,+#_e27500115dfbd7504d1efecd8717957e | p5@WISP2 |
| 3.34e-31 | FFCP PHASE1:Hg19::chr20:43343610..43343645,+#_e27500115dfbd7504d1efecd8717957e | p5@WISP2 |
| 1.1e-30 | FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_53c0f4501b1e517c8671d64046aeaa90 | p@chr7:158224707..158224729, - |
| 1.1e-30 | FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_53c0f4501b1e517c8671d64046aeaa90 | p@chr7:158224707..158224729, - |
| 4.93e-30 | FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_e1793585804b499556d8f7895e729d39 | p@chr1:65888177..65888194, + |
| 4.93e-30 | FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_e1793585804b499556d8f7895e729d39 | p@chr1:65888177..65888194, + |
| 1.3e-29 | FFCP PHASE1:Hg19::chr2:241937787..241937803,+#_018ee048f847ee8bbf48b47138b069a0 | p5@SNED1 |
| 1.3e-29 | FFCP PHASE2:Hg19::chr2:241937787..241937803,+#_018ee048f847ee8bbf48b47138b069a0 | p5@SNED1 |
| 6.39e-29 | FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_c705c07192c8f3caa0a1d1166d01499f | p@chr17:38613285..38613298, - |
| 6.39e-29 | FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_c705c07192c8f3caa0a1d1166d01499f | p@chr17:38613285..38613298, - |
| 6.71e-29 | FFCP PHASE2:Hg19::chr9:113798560..113798572,-#_8cc0eb05885da34ffd103d5cb86ae9e6 | p34@LPAR1 |
| 6.71e-29 | FFCP PHASE1:Hg19::chr9:113798560..113798572,-#_8cc0eb05885da34ffd103d5cb86ae9e6 | p34@LPAR1 |
| 1.23e-28 | FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_069053ecb620ca892c5c2c0ef54abafb | p3@NKX3-2 |
| 1.23e-28 | FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_069053ecb620ca892c5c2c0ef54abafb | p3@NKX3-2 |
| 1.72e-28 | FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_2b1e56c3dbb201347649dfa975f98cad | p6@WISP2 |
| 1.72e-28 | FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_2b1e56c3dbb201347649dfa975f98cad | p6@WISP2 |
| 1.13e-27 | FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_bf04f571dcf4dbc6e38d3b8c072c5455 | p1@MGC27382 |
| 1.13e-27 | FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_bf04f571dcf4dbc6e38d3b8c072c5455 | p1@MGC27382 |
| 3.37e-27 | FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_dfbc978b9bdeed6f4df5be6982b8ce51 | p18@HDAC9 |
| 3.37e-27 | FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_dfbc978b9bdeed6f4df5be6982b8ce51 | p18@HDAC9 |
| 9.5e-27 | FFCP PHASE1:Hg19::chr8:25337491..25337504,+#_6d7050f391f99d7039feef32473c3575 | p@chr8:25337491..25337504, + |
| 9.5e-27 | FFCP PHASE2:Hg19::chr8:25337491..25337504,+#_6d7050f391f99d7039feef32473c3575 | p@chr8:25337491..25337504, + |
| 2.17e-26 | FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_20540e727c28c17cb73174be9930c38b | p@chr14:61113228..61113233, - |
| 2.17e-26 | FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_20540e727c28c17cb73174be9930c38b | p@chr14:61113228..61113233, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr9:33028063..33028067, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr15:68117826..68117829,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p9@SKOR1 |
| 5.22e-26 | FFCP PHASE1:Hg19::chr2:181751144..181751146,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr2:181751144..181751146, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134755..172134764,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr1:172134755..172134764, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr13:24914614..24914622, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr13:24914614..24914622, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr8:37411632..37411639,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p1@ENST00000517363 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr15:68117826..68117829,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p9@SKOR1 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr2:181751144..181751146,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr2:181751144..181751146, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr8:37411632..37411639,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p1@ENST00000517363 |
| 5.22e-26 | FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr9:33028063..33028067, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134667..172134711,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr1:172134667..172134711, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134667..172134711,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr1:172134667..172134711, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134736..172134739,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr1:172134736..172134739, + |
| 5.22e-26 | FFCP PHASE2:Hg19::chr12:130786785..130786827,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr12:130786785..130786827, - |
| 5.22e-26 | FFCP PHASE2:Hg19::chr1:172134736..172134739,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr1:172134736..172134739, + |
| 5.22e-26 | FFCP PHASE1:Hg19::chr12:130786785..130786827,-#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr12:130786785..130786827, - |
| 5.22e-26 | FFCP PHASE1:Hg19::chr1:172134755..172134764,+#_1afb8a7c4d085aa4ced10c3100dd0e94 | p@chr1:172134755..172134764, + |
| 8.65e-26 | FFCP PHASE1:Hg19::chr18:22150956..22150983,+#_fd5f24634853404a2c86ba988e324d9f | p@chr18:22150956..22150983, + |
| 8.65e-26 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_fd5f24634853404a2c86ba988e324d9f | p5@PTGFR |
| 8.65e-26 | FFCP PHASE2:Hg19::chr18:22150956..22150983,+#_fd5f24634853404a2c86ba988e324d9f | p@chr18:22150956..22150983, + |
| 8.65e-26 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_fd5f24634853404a2c86ba988e324d9f | p5@PTGFR |
| 9.05e-26 | FFCP PHASE1:Hg19::chr6:1626414..1626429,-#_50f959489ff16fe8307f6937d52094e4 | p7@GMDS |
| 9.05e-26 | FFCP PHASE2:Hg19::chr6:1626414..1626429,-#_50f959489ff16fe8307f6937d52094e4 | p7@GMDS |
| 1.44e-25 | FFCP PHASE1:Hg19::chr9:113798435..113798442,-#_e24a5248355fea29b213f98720a1905c | p42@LPAR1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr9:113798435..113798442,-#_e24a5248355fea29b213f98720a1905c | p42@LPAR1 |
| 1.56e-25 | FFCP PHASE1:Hg19::chr5:17743903..17743914,+#_4252e22713691d92b5d658811ddd36f7 | p@chr5:17743903..17743914, + |
| 1.56e-25 | FFCP PHASE2:Hg19::chr5:17743903..17743914,+#_4252e22713691d92b5d658811ddd36f7 | p@chr5:17743903..17743914, + |
