UBERON:0001007: Difference between revisions
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|name=digestive system | |name=digestive system | ||
|namespace= | |namespace= | ||
|def="Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system] | |def="Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system\,] | ||
|xref=AAO:0000129;;BILA:0000082;;BTO:0000058;;EFO:0000793;;EV:0100056;;FBbt:00005055;;FMA:7152;;GAID:278;;galen:DigestiveSystem;;MA:0002431;;MAT:0000018;;MESH:A.03;;MIAA:0000018;;ncithesaurus:Digestive_System;;SCTID:278859004;;TADS:0000170;;TAO:0000339;;WBbt:0005748;;XAO:0000125;;ZFA:0000339 | |xref=AAO:0000129;;BILA:0000082;;BTO:0000058;;EFO:0000793;;EV:0100056;;FBbt:00005055;;FMA:7152;;GAID:278;;galen:DigestiveSystem;;MA:0002431;;MAT:0000018;;MESH:A.03;;MIAA:0000018;;ncithesaurus:Digestive_System;;SCTID:278859004;;TADS:0000170;;TAO:0000339;;WBbt:0005748;;XAO:0000125;;ZFA:0000339 | ||
|is_a=UBERON:0000467 | |is_a=UBERON:0000467 | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:58, 26 June 2012
| Name: | digestive system | ||
|---|---|---|---|
| Definition: | "Anatomical system that has as its parts the organs devoted to the ingestion, digestion, and assimilation of food and the discharge of residual wastes." [FB:gg, NLM:alimentary+system, Wikipedia:Digestive_system\,] | ||
| Xrefs: |
| ||
| Synonyms: |
"alimentary system" RELATED [] "alimentary tract" RELATED [] "gastrointestinal system" RELATED [] "gut" RELATED [] | ||
| Comments: | note that many anatomy ontologies consider gastrointestinal system synonymous with digestive system. here we follow MA in dividing digestive system into gastrointestinal and hepatobiliary. hepatobiliary includes the liver and biliary tract. species-specific AO classes are categorized according to whether liver is included. For example, XAO includes liver as part of XAO:0000125 alimentary system, so we assume this class is the more generic class | ||
| Alt_id: | UBERON:FBbt_00005055-FMA_7152-MA_0000323-MIAA_0000018-WBbt_0005748-XAO_0000125-ZFA_0000339 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| disjoint_from: | UBERON:0001008(renal system),UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system) |
Children
| is a: | FF:10628-108H7 () |
|---|---|
| disjoint from: | UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system) |
| part of: | UBERON:0001555 (digestive tract),UBERON:0002106 (spleen),UBERON:0002107 (liver),UBERON:0002423 (hepatobiliary system),UBERON:0003928 (digestive system duct),UBERON:0005409 (gastrointestinal system),UBERON:0006925 (digestive gland),UBERON:0013765 (digestive system element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10059-101H5 (tongue, fetal, donor1)
- 10062-101H8 (stomach, fetal, donor1)
- 10063-101H9 (temporal lobe, fetal, donor1)
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10018-101C9 (liver, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10059-101H5 (tongue, fetal, donor1)
- 10062-101H8 (stomach, fetal, donor1)
- 10063-101H9 (temporal lobe, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001007 (digestive system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.99e-36 | FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_0616d1223300b67f4b8762a3d5b094e5 | p1@FOXA1 |
| 4.99e-36 | FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_0616d1223300b67f4b8762a3d5b094e5 | p1@FOXA1 |
| 1.61e-35 | FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_1e8e7145e21f4c8192a0568e5a5e36a3 | p2@PITX1 |
| 1.61e-35 | FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_1e8e7145e21f4c8192a0568e5a5e36a3 | p2@PITX1 |
| 1.29e-32 | FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_c3e61fb805f74f7f2d0743cd8e4cd9f9 | p1@ESRP2 |
| 1.29e-32 | FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_c3e61fb805f74f7f2d0743cd8e4cd9f9 | p1@ESRP2 |
| 4.79e-32 | FFCP PHASE1:Hg19::chr16:86542652..86542692,-#_eff3c5ce214ef9889a10196575e4780e | p2@LOC400550 |
| 4.79e-32 | FFCP PHASE2:Hg19::chr16:86542652..86542692,-#_eff3c5ce214ef9889a10196575e4780e | p2@LOC400550 |
| 9.87e-31 | FFCP PHASE1:Hg19::chr16:86532148..86532166,-#_e8fbc2ee8528f078ea6751a385336e0e | p@chr16:86532148..86532166, - |
| 9.87e-31 | FFCP PHASE2:Hg19::chr16:86532148..86532166,-#_e8fbc2ee8528f078ea6751a385336e0e | p@chr16:86532148..86532166, - |
| 1.01e-30 | FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_50a680a814354974defddb05c7d0ed36 | p1@MYO5B |
| 1.01e-30 | FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_50a680a814354974defddb05c7d0ed36 | p1@MYO5B |
| 1.18e-30 | FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_7da0b1c6845b74230b1e1466b3ccece7 | p1@GPX2 |
| 1.18e-30 | FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_7da0b1c6845b74230b1e1466b3ccece7 | p1@GPX2 |
| 5.14e-30 | FFCP PHASE1:Mm9::chr12:58646974..58647003,-#_b422ad199b5ed8c70d33ae6969e87da8 | p1@Foxa1 |
| 5.14e-30 | FFCP PHASE2:Mm9::chr12:58646974..58647003,-#_b422ad199b5ed8c70d33ae6969e87da8 | p1@Foxa1 |
| 5.76e-30 | FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_08d0a01aae7838367a0453314279bdf0 | p2@Akr1c13 |
| 5.76e-30 | FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_08d0a01aae7838367a0453314279bdf0 | p2@Akr1c13 |
| 1.52e-29 | FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_b1bcb8a0b817d8c3d25eede4e92ebbfe | p1@PTK6 |
| 1.52e-29 | FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_b1bcb8a0b817d8c3d25eede4e92ebbfe | p1@PTK6 |
| 4.1e-29 | FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_a3433454107512d40462fef5c2fd8f41 | p@chr16:68260798..68260800, - |
| 4.1e-29 | FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_a3433454107512d40462fef5c2fd8f41 | p@chr16:68260798..68260800, - |
| 6.23e-29 | FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_51fa1043593ba12a06a3dc7241a50f9b | p1@ELF3 |
| 6.23e-29 | FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_51fa1043593ba12a06a3dc7241a50f9b | p1@ELF3 |
| 7.64e-29 | FFCP PHASE1:Mm9::chr2:180976725..180976753,-#_0b35c27c892efb7dcb39c4899516e943 | p2@BC006779 |
| 7.64e-29 | FFCP PHASE2:Mm9::chr2:180976725..180976753,-#_0b35c27c892efb7dcb39c4899516e943 | p2@BC006779 |
| 1.66e-28 | FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_4367a173f187e020acded12f5e6e7294 | p1@CEACAM5 |
| 1.66e-28 | FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_4367a173f187e020acded12f5e6e7294 | p1@CEACAM5 |
| 2.87e-28 | FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_78ff80e629ce72c3b17c0deb9becbb5a | p3@CLDN7 |
| 2.87e-28 | FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_78ff80e629ce72c3b17c0deb9becbb5a | p3@CLDN7 |
| 7.57e-28 | FFCP PHASE1:Mm9::chr8:70018742..70018782,+#_05299ad582dd90b6ef3deacd0ff976be | p1@Nat2 |
| 7.57e-28 | FFCP PHASE2:Mm9::chr8:70018742..70018782,+#_05299ad582dd90b6ef3deacd0ff976be | p1@Nat2 |
| 1.1e-27 | FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_00466d6f24c273e721176e72354c6ee4 | p1@PITX1 |
| 1.1e-27 | FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_00466d6f24c273e721176e72354c6ee4 | p1@PITX1 |
| 1.82e-27 | FFCP PHASE2:Mm9::chr5:65194752..65194769,+#_1b1c229f140a0bf8dcd6dd14267ba41a | p1@Klf3 |
| 1.82e-27 | FFCP PHASE1:Mm9::chr5:65194752..65194769,+#_1b1c229f140a0bf8dcd6dd14267ba41a | p1@Klf3 |
| 3.7e-27 | FFCP PHASE1:Mm9::chr2:51828449..51828501,-#_2c0e26923913a90813d349ed1f162f09 | p1@Nmi |
| 3.7e-27 | FFCP PHASE2:Mm9::chr2:51828449..51828501,-#_2c0e26923913a90813d349ed1f162f09 | p1@Nmi |
| 3.88e-27 | FFCP PHASE1:Hg19::chr6:1312325..1312340,+#_5e72491047b9e78d9682dd802f95db25 | p1@FOXQ1 |
| 3.88e-27 | FFCP PHASE2:Hg19::chr6:1312325..1312340,+#_5e72491047b9e78d9682dd802f95db25 | p1@FOXQ1 |
| 5.02e-27 | FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_12e54e4eb849768cef3d3c8be7c30b35 | p1@CNKSR1 |
| 5.02e-27 | FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_12e54e4eb849768cef3d3c8be7c30b35 | p1@CNKSR1 |
| 5.37e-27 | FFCP PHASE1:Mm9::chr1:37722539..37722560,-#_55faa335ba2119deb1f0f244be53e83b | p@chr1:37722539..37722560, - |
| 5.37e-27 | FFCP PHASE2:Mm9::chr1:37722539..37722560,-#_55faa335ba2119deb1f0f244be53e83b | p@chr1:37722539..37722560, - |
| 5.43e-27 | FFCP PHASE2:Hg19::chr11:394196..394258,+#_63ed13bbf7f985e7aed18e7d69a3620d | p1@PKP3 |
| 5.43e-27 | FFCP PHASE1:Hg19::chr11:394196..394258,+#_63ed13bbf7f985e7aed18e7d69a3620d | p1@PKP3 |
| 6.53e-27 | FFCP PHASE2:Mm9::chr13:4278636..4278655,-#_c013150f06ea29c3b98f73d39b1f985d | p1@Akr1c12 |
| 6.53e-27 | FFCP PHASE1:Mm9::chr13:4278636..4278655,-#_c013150f06ea29c3b98f73d39b1f985d | p1@Akr1c12 |
| 1.11e-26 | FFCP PHASE2:Mm9::chr1:58852306..58852403,+#_715fd390d9524790b57e8556f2711cd4 | p2@Casp8 |
| 1.11e-26 | FFCP PHASE1:Mm9::chr1:58852306..58852403,+#_715fd390d9524790b57e8556f2711cd4 | p2@Casp8 |
| 2.45e-26 | FFCP PHASE2:Mm9::chr6:7795251..7795299,+#_21f3545ac2f299551108819ae1f63727 | p1@C1galt1 |
| 2.45e-26 | FFCP PHASE1:Mm9::chr6:7795251..7795299,+#_21f3545ac2f299551108819ae1f63727 | p1@C1galt1 |
| 2.56e-26 | FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_a2bcf83a283e8f315e129594d927aed1 | p2@GPX2 |
| 2.56e-26 | FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_a2bcf83a283e8f315e129594d927aed1 | p2@GPX2 |
| 2.62e-26 | FFCP PHASE1:Hg19::chr6:116381918..116381977,-#_f4d4ae7739f5e3a6cbeb5a0cd9ac9120 | p1@FRK |
| 2.62e-26 | FFCP PHASE2:Hg19::chr6:116381918..116381977,-#_f4d4ae7739f5e3a6cbeb5a0cd9ac9120 | p1@FRK |
| 2.79e-26 | FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_4c7e82e4258697f7ac38704ec4ada012 | p1@PRRG4 |
| 2.79e-26 | FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_4c7e82e4258697f7ac38704ec4ada012 | p1@PRRG4 |
| 3.02e-26 | FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_b0b9fa2994f65c9533d214901ba51550 | p2@CHMP4C |
| 3.02e-26 | FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_b0b9fa2994f65c9533d214901ba51550 | p2@CHMP4C |
| 3.55e-26 | FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_3cab60f341827d5bf2d4cd58ff722698 | p1@LAMB3 |
| 3.55e-26 | FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_3cab60f341827d5bf2d4cd58ff722698 | p1@LAMB3 |
| 4.15e-26 | FFCP PHASE2:Mm9::chr18:38369387..38369401,-#_29bacea43239dfe1d28190918143b15a | p4@Pcdh1 |
| 4.15e-26 | FFCP PHASE1:Mm9::chr18:38369387..38369401,-#_29bacea43239dfe1d28190918143b15a | p4@Pcdh1 |
| 4.54e-26 | FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_298026b93bd270a8d010a163d0e2987c | p2@LMO7 |
| 4.54e-26 | FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_298026b93bd270a8d010a163d0e2987c | p2@LMO7 |
| 4.87e-26 | FFCP PHASE2:Mm9::chr11:106781922..106781957,-#_97b7bff6f6de432c88bec895b9cb4239 | p4@Smurf2 |
| 4.87e-26 | FFCP PHASE1:Mm9::chr11:106781922..106781957,-#_97b7bff6f6de432c88bec895b9cb4239 | p4@Smurf2 |
| 4.9e-26 | FFCP PHASE2:Mm9::chr1:58852462..58852483,+#_6bb8ca5ac55230de1107d70add890fe7 | p4@Casp8 |
| 4.9e-26 | FFCP PHASE1:Mm9::chr1:58852462..58852483,+#_6bb8ca5ac55230de1107d70add890fe7 | p4@Casp8 |
| 5.37e-26 | FFCP PHASE1:Hg19::chr3:142315294..142315315,+#_97a9853bd4a118db716bba30c38f08a6 | p3@PLS1 |
| 5.37e-26 | FFCP PHASE2:Hg19::chr3:142315294..142315315,+#_97a9853bd4a118db716bba30c38f08a6 | p3@PLS1 |
| 5.52e-26 | FFCP PHASE1:Mm9::chr4:124428852..124428893,+#_e88fb6c369d850260deca337b020794c | p1@Inpp5b |
| 5.52e-26 | FFCP PHASE2:Mm9::chr4:124428852..124428893,+#_e88fb6c369d850260deca337b020794c | p1@Inpp5b |
| 5.79e-26 | FFCP PHASE2:Mm9::chr13:101322621..101322632,-#_231f4f0318ad96f9534a8ebec7cb72ee | p4@Ocln |
| 5.79e-26 | FFCP PHASE1:Mm9::chr13:101322621..101322632,-#_231f4f0318ad96f9534a8ebec7cb72ee | p4@Ocln |
| 6.23e-26 | FFCP PHASE1:Hg19::chr19:3708338..3708374,+#_7550627fb03f3db9cfb3a1ec54b387a2 | p2@TJP3 |
| 6.23e-26 | FFCP PHASE2:Hg19::chr19:3708338..3708374,+#_7550627fb03f3db9cfb3a1ec54b387a2 | p2@TJP3 |
| 6.37e-26 | FFCP PHASE2:Mm9::chr10:128180925..128180966,-#_73414929d77b3a75181e7570c439b03e | p2@Dgka |
| 6.37e-26 | FFCP PHASE1:Mm9::chr10:128180925..128180966,-#_73414929d77b3a75181e7570c439b03e | p2@Dgka |
| 7.63e-26 | FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_ba6dffb2430a66703b949f59636c3fa7 | p2@ALDH3A1 |
| 7.63e-26 | FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_ba6dffb2430a66703b949f59636c3fa7 | p2@ALDH3A1 |
| 8.05e-26 | FFCP PHASE1:Mm9::chr9:110782790..110782819,+#_0cc3773560144d2b567b7295de613bb4 | p1@Als2cl |
| 8.05e-26 | FFCP PHASE2:Mm9::chr9:110782790..110782819,+#_0cc3773560144d2b567b7295de613bb4 | p1@Als2cl |
| 8.42e-26 | FFCP PHASE2:Mm9::chr11:116072277..116072320,+#_b9dc99a06d13e5b7aac9386e84cb04fb | p2@2310004N24Rik |
| 8.42e-26 | FFCP PHASE1:Mm9::chr11:116072277..116072320,+#_b9dc99a06d13e5b7aac9386e84cb04fb | p2@2310004N24Rik |
| 9.38e-26 | FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_2dd885c6a2b68c94cd2fce89a848b6c1 | p1@TMEM184A |
| 9.38e-26 | FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_2dd885c6a2b68c94cd2fce89a848b6c1 | p1@TMEM184A |
| 1.03e-25 | FFCP PHASE1:Hg19::chr10:101690650..101690683,-#_3a87744b64f0e777bc8f919f2b826eab | p2@DNMBP |
| 1.03e-25 | FFCP PHASE2:Hg19::chr10:101690650..101690683,-#_3a87744b64f0e777bc8f919f2b826eab | p2@DNMBP |
| 1.14e-25 | FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_e7c1f777f1e3a14f6c8399741352f179 | p2@ELF3 |
| 1.14e-25 | FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_e7c1f777f1e3a14f6c8399741352f179 | p2@ELF3 |
| 1.37e-25 | FFCP PHASE1:Hg19::chr10:114133905..114133922,+#_1b81519c4cee8832b401c746d85cded5 | p2@ACSL5 |
| 1.37e-25 | FFCP PHASE2:Hg19::chr10:114133905..114133922,+#_1b81519c4cee8832b401c746d85cded5 | p2@ACSL5 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_456e9202ba03234212a054094275d773 | p1@SERPINB5 |
| 1.44e-25 | FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_456e9202ba03234212a054094275d773 | p1@SERPINB5 |
| 1.48e-25 | FFCP PHASE2:Mm9::chr6:117867010..117867024,+#_905b6fa5c7c1b3cfb2f4941baaa85da7 | p3@Hnrnpf |
| 1.48e-25 | FFCP PHASE1:Mm9::chr6:117867010..117867024,+#_905b6fa5c7c1b3cfb2f4941baaa85da7 | p3@Hnrnpf |
| 1.51e-25 | FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_a6ce59d37efbf03616f44ca82a853b94 | p3@PHLDB2 |
| 1.51e-25 | FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_a6ce59d37efbf03616f44ca82a853b94 | p3@PHLDB2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "An anatomical system consisting of the alimentary canal and digestive glands responsible for intake, absorption, digestion and excretion of food.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
