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|namespace=
|namespace=
|def="Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
|def="Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
|xref=AAO:0011060;;EHDAA:4698;;EMAPA:17815;;EV:0100367;;FMA:61022;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png;;MA:0000242;;ncithesaurus:Membranous_Labyrinth;;SCTID:263790009;;VHOG:0000729;;XAO:0000194
|xref=AAO:0011060;;EHDAA:4698;;EMAPA:17815;;EV:0100367;;FMA:61022;;http://upload.wikimedia.org/wikipedia/commons/8/8c/Gray924.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/8/8c/Gray924.png/200px-Gray924.png;;MA:0000242;;ncithesaurus:Membranous_Labyrinth;;SCTID:263790009;;VHOG:0000729;;XAO:0000194
|is_a=UBERON:0000062;;UBERON:0004120;;UBERON:0004121
|is_a=UBERON:0000020;;UBERON:0004120;;UBERON:0004121;;UBERON:0010314
|synonym=
|synonym="labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
|comment=inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
|comment=inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
|alt_id=UBERON:FMA_61022-MA_0000242-XAO_0000194
|alt_id=UBERON:FMA_61022-MA_0000242-XAO_0000194
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|obo_creation_date=
|obo_creation_date=
|subset=organ_slim;;uberon_slim
|subset=organ_slim;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0010113
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001846
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:00, 26 June 2012

Name:membranous labyrinth
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000020(sense organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_ff6b9d38f6a159b0c39897a75ae91190p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_ff6b9d38f6a159b0c39897a75ae91190p10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:170417150..170417155, -
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_ff6b9d38f6a159b0c39897a75ae91190p15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_ff6b9d38f6a159b0c39897a75ae91190p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207983..42207995,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349378..107349390,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207375..42207384,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr7:133957514..133957529,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_ff6b9d38f6a159b0c39897a75ae91190p9@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_ff6b9d38f6a159b0c39897a75ae91190p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_ff6b9d38f6a159b0c39897a75ae91190p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_ff6b9d38f6a159b0c39897a75ae91190p41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Otof
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_ff6b9d38f6a159b0c39897a75ae91190p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971367..93971379, -

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