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UBERON:0001849

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Name:membranous labyrinth
Namespace:FANTOM
Definition:"Organ with organ cavity which consists of the vestibular labyrinth and the cochlear labyrinth. Examples: There are only two membranous labyrinths, the right and the left.[FMA]" [FMA:FMA, Wikipedia:Membranous_labyrinth]
Xrefs:
links:

AAO:0011060
EHDAA:4698
EMAPA:17815
EV:0100367
FMA:61022
[ Gray924.png Gray924.png]
[ 200px-Gray924.png 200px-Gray924.png]
MA:0000242
ncithesaurus:Membranous_Labyrinth
SCTID:263790009
VHOG:0000729

XAO:0000194
Synonyms: "labyrinthus membranaceus" RELATED LATIN [Wikipedia:Membranous_labyrinth]
Comments:inner ear has parts membranous and osseuous/bony labyrinth. it's not clear where the edinburgh terms 'labyrinth' belong, we place them here for now
Alt_id: UBERON:FMA_61022-MA_0000242-XAO_0000194
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000062(organ),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0005641(otocyst epithelium)
part_of:UBERON:0001846(internal ear)



Children

part of:UBERON:0002499 (cochlear labyrinth)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001849 (membranous labyrinth), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_ff6b9d38f6a159b0c39897a75ae91190p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_ff6b9d38f6a159b0c39897a75ae91190p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699188..43699216,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_ff6b9d38f6a159b0c39897a75ae91190p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_ff6b9d38f6a159b0c39897a75ae91190p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_ff6b9d38f6a159b0c39897a75ae91190p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_ff6b9d38f6a159b0c39897a75ae91190p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_ff6b9d38f6a159b0c39897a75ae91190p18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_ff6b9d38f6a159b0c39897a75ae91190p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Otol1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_ff6b9d38f6a159b0c39897a75ae91190p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_ff6b9d38f6a159b0c39897a75ae91190p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:89215319..89215330, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_ff6b9d38f6a159b0c39897a75ae91190p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:37195838..37195870, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_ff6b9d38f6a159b0c39897a75ae91190p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_ff6b9d38f6a159b0c39897a75ae91190p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_ff6b9d38f6a159b0c39897a75ae91190p2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_ff6b9d38f6a159b0c39897a75ae91190p5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_ff6b9d38f6a159b0c39897a75ae91190p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr18:81314626..81314636, +
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_ff6b9d38f6a159b0c39897a75ae91190p1@Tecta
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_ff6b9d38f6a159b0c39897a75ae91190p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_ff6b9d38f6a159b0c39897a75ae91190p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_ff6b9d38f6a159b0c39897a75ae91190p9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_ff6b9d38f6a159b0c39897a75ae91190p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_ff6b9d38f6a159b0c39897a75ae91190p@chr1:94627290..94627299, -