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Revision as of 13:04, 27 June 2012

Name:mesenchymal stem cell of umbilical cord
Namespace:cell
Definition:"A mesenchymal stem cell of the umbilical cord." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T09:55:12Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000134(mesenchymal cell),CL:0000349(extraembryonic cell)
part_of:UBERON:0003422(mesenchyme of umbilical cord)



Children


is a:CL:0002568 (mesenchymal stem cell of Wharton's jelly)
derives from:FF:0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample),FF:0000117 (human mesenchymal stem cell of umbilical cord blood sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)

Mouse (Mus musculus)

  • 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
  • 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
  • 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
  • 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
  • 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
  • 11628-122B8
  • 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
  • 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002569 (mesenchymal stem cell of umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
9.96e-60FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_41c2842c19ae990c1ffff0be9fb354cap@chr3:162256416..162256425, -
9.96e-60FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_41c2842c19ae990c1ffff0be9fb354cap@chr3:162256416..162256425, -
5.62e-43FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_173d13a953e045cdee2751ea04d6ead6p29@MME
5.62e-43FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_173d13a953e045cdee2751ea04d6ead6p29@MME
4.27e-34FFCP PHASE2:Hg19::chr6:11354777..11354778,+#_005feb395b0446ebbdf0f3120e8fb78ap@chr6:11354777..11354778, +
4.27e-34FFCP PHASE1:Hg19::chr6:11354777..11354778,+#_005feb395b0446ebbdf0f3120e8fb78ap@chr6:11354777..11354778, +
1.67e-25FFCP PHASE2:Hg19::chr17:47039342..47039353,-#_3b2c8ba7f2f3997827da3cae5e4823a8p@chr17:47039342..47039353, -
1.67e-25FFCP PHASE1:Hg19::chr17:47039342..47039353,-#_3b2c8ba7f2f3997827da3cae5e4823a8p@chr17:47039342..47039353, -
6.78e-23FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_75b788521b79ae72f27d126a024805fep@chr15:68805200..68805208, +
6.78e-23FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_75b788521b79ae72f27d126a024805fep@chr15:68805200..68805208, +
7.58e-23FFCP PHASE2:Hg19::chr13:110840203..110840210,-#_f6f3684e35a52975f0be6b6f14d877a0p@chr13:110840203..110840210, -
7.58e-23FFCP PHASE1:Hg19::chr13:110840203..110840210,-#_f6f3684e35a52975f0be6b6f14d877a0p@chr13:110840203..110840210, -
7.72e-22FFCP PHASE1:Hg19::chr8:19615538..19615541,-#_f9faf8a6bd38368dc7111b45c521d120p12@CSGALNACT1
7.72e-22FFCP PHASE2:Hg19::chr8:19615538..19615541,-#_f9faf8a6bd38368dc7111b45c521d120p12@CSGALNACT1
2.4e-20FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_d5b000900041229066e5ca222eb6c633p@chr4:174429652..174429665, +
2.4e-20FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_d5b000900041229066e5ca222eb6c633p@chr4:174429652..174429665, +
5.89e-20FFCP PHASE1:Hg19::chr3:162156271..162156273,-#_ba263175cbcd02df1aac2fe217276b3cp@chr3:162156271..162156273, -
5.89e-20FFCP PHASE2:Hg19::chr3:162156271..162156273,-#_ba263175cbcd02df1aac2fe217276b3cp@chr3:162156271..162156273, -
7.13e-20FFCP PHASE1:Hg19::chr4:174427862..174427899,+#_c09fb7f1ae657455e061bb5af91cdc5bp@chr4:174427862..174427899, +
7.13e-20FFCP PHASE2:Hg19::chr4:174427862..174427899,+#_c09fb7f1ae657455e061bb5af91cdc5bp@chr4:174427862..174427899, +
1.95e-18FFCP PHASE2:Hg19::chr6:137243433..137243444,+#_d6c5a434842905321d5ac4199d91a03fp2@SLC35D3
1.95e-18FFCP PHASE1:Hg19::chr6:137243433..137243444,+#_d6c5a434842905321d5ac4199d91a03fp2@SLC35D3
9.07e-18FFCP PHASE1:Hg19::chr9:132596981..132596990,-#_115884388a522f2337475320aa3eb2e0p6@C9orf78
9.07e-18FFCP PHASE2:Hg19::chrX:11502822..11502831,-#_115884388a522f2337475320aa3eb2e0p@chrX:11502822..11502831, -
9.07e-18FFCP PHASE2:Hg19::chr9:132596981..132596990,-#_115884388a522f2337475320aa3eb2e0p6@C9orf78
9.07e-18FFCP PHASE1:Hg19::chr5:131543465..131543475,-#_115884388a522f2337475320aa3eb2e0p@chr5:131543465..131543475, -
9.07e-18FFCP PHASE2:Hg19::chr5:131543465..131543475,-#_115884388a522f2337475320aa3eb2e0p@chr5:131543465..131543475, -
9.07e-18FFCP PHASE1:Hg19::chr8:42623701..42623709,-#_115884388a522f2337475320aa3eb2e0p4@CHRNA6
9.07e-18FFCP PHASE2:Hg19::chr14:101159742..101159785,+#_115884388a522f2337475320aa3eb2e0p@chr14:101159742..101159785, +
9.07e-18FFCP PHASE2:Hg19::chr8:42623701..42623709,-#_115884388a522f2337475320aa3eb2e0p4@CHRNA6
9.07e-18FFCP PHASE2:Hg19::chr7:101461145..101461152,+#_115884388a522f2337475320aa3eb2e0p@chr7:101461145..101461152, +
9.07e-18FFCP PHASE1:Hg19::chr7:101461145..101461152,+#_115884388a522f2337475320aa3eb2e0p@chr7:101461145..101461152, +
9.07e-18FFCP PHASE2:Hg19::chr12:56912838..56912839,+#_115884388a522f2337475320aa3eb2e0p@chr12:56912838..56912839, +
9.07e-18FFCP PHASE2:Hg19::chr22:31495739..31495756,+#_115884388a522f2337475320aa3eb2e0p33@SMTN
9.07e-18FFCP PHASE2:Hg19::chr19:18543312..18543351,+#_115884388a522f2337475320aa3eb2e0p@chr19:18543312..18543351, +
9.07e-18FFCP PHASE1:Hg19::chr5:115626749..115626788,+#_115884388a522f2337475320aa3eb2e0p6@COMMD10
9.07e-18FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_115884388a522f2337475320aa3eb2e0p33@SMTN
9.07e-18FFCP PHASE1:Hg19::chr19:18543312..18543351,+#_115884388a522f2337475320aa3eb2e0p@chr19:18543312..18543351, +
9.07e-18FFCP PHASE1:Hg19::chr3:194215033..194215040,-#_115884388a522f2337475320aa3eb2e0p@chr3:194215033..194215040, -
9.07e-18FFCP PHASE1:Hg19::chr14:101159742..101159785,+#_115884388a522f2337475320aa3eb2e0p@chr14:101159742..101159785, +
9.07e-18FFCP PHASE2:Hg19::chr5:115626749..115626788,+#_115884388a522f2337475320aa3eb2e0p6@COMMD10
9.07e-18FFCP PHASE2:Hg19::chr3:194215033..194215040,-#_115884388a522f2337475320aa3eb2e0p@chr3:194215033..194215040, -
9.07e-18FFCP PHASE2:Hg19::chr18:43690139..43690142,+#_115884388a522f2337475320aa3eb2e0p@chr18:43690139..43690142, +
9.07e-18FFCP PHASE1:Hg19::chr12:56912838..56912839,+#_115884388a522f2337475320aa3eb2e0p@chr12:56912838..56912839, +
9.07e-18FFCP PHASE1:Hg19::chrX:11502822..11502831,-#_115884388a522f2337475320aa3eb2e0p@chrX:11502822..11502831, -
9.07e-18FFCP PHASE1:Hg19::chr18:43690139..43690142,+#_115884388a522f2337475320aa3eb2e0p@chr18:43690139..43690142, +
1.57e-17FFCP PHASE1:Hg19::chr8:37003588..37003608,-#_a7929cd8b6477903b67c6db69f9bbdd6p@chr8:37003588..37003608, -
1.57e-17FFCP PHASE2:Hg19::chr8:37003588..37003608,-#_a7929cd8b6477903b67c6db69f9bbdd6p@chr8:37003588..37003608, -
3.38e-16FFCP PHASE2:Hg19::chr1:229041596..229041602,-#_b06ad102618eb39b71627b30d9a786e4p@chr1:229041596..229041602, -
3.38e-16FFCP PHASE1:Hg19::chr1:229041596..229041602,-#_b06ad102618eb39b71627b30d9a786e4p@chr1:229041596..229041602, -
1.07e-15FFCP PHASE1:Hg19::chr8:11653468..11653496,+#_1fdffa63be18a434eaccbe7b1882e1a7p9@FDFT1
1.07e-15FFCP PHASE2:Hg19::chr8:11653468..11653496,+#_1fdffa63be18a434eaccbe7b1882e1a7p9@FDFT1
1.13e-15FFCP PHASE2:Hg19::chr6:25004775..25004790,-#_3d190778fdfeccb7f49e1d7fbaf832c8p@chr6:25004775..25004790, -
1.13e-15FFCP PHASE1:Hg19::chr6:25004775..25004790,-#_3d190778fdfeccb7f49e1d7fbaf832c8p@chr6:25004775..25004790, -
1.22e-15FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_f9dba3668b8bb04fb8a0942c797553a3p4@ENST00000443508
1.22e-15FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_f9dba3668b8bb04fb8a0942c797553a3p4@ENST00000443508
1.63e-15FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_3ed42d22f375aa13ab35acc4f90330c9p@chr5:172901990..172901996, +
1.63e-15FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_3ed42d22f375aa13ab35acc4f90330c9p@chr5:172901990..172901996, +
1.08e-14FFCP PHASE1:Hg19::chr17:38698622..38698655,-#_56bc416424d1b372c37b6bb45b498125p@chr17:38698622..38698655, -
1.08e-14FFCP PHASE2:Hg19::chr17:38698622..38698655,-#_56bc416424d1b372c37b6bb45b498125p@chr17:38698622..38698655, -
1.19e-14FFCP PHASE1:Hg19::chr2:45233119..45233139,-#_6ac300dbc315c73cae781cc70cb5fc72p@chr2:45233119..45233139, -
1.19e-14FFCP PHASE2:Hg19::chr2:45233119..45233139,-#_6ac300dbc315c73cae781cc70cb5fc72p@chr2:45233119..45233139, -
1.19e-14FFCP PHASE2:Hg19::chr7:94060437..94060448,+#_6ac300dbc315c73cae781cc70cb5fc72p@chr7:94060437..94060448, +
1.19e-14FFCP PHASE1:Hg19::chr7:94060437..94060448,+#_6ac300dbc315c73cae781cc70cb5fc72p@chr7:94060437..94060448, +
2.89e-14FFCP PHASE2:Hg19::chr11:76381029..76381041,-#_493a9666b38b0c0bc9c259eb33704473p6@LRRC32
2.89e-14FFCP PHASE1:Hg19::chr11:76381029..76381041,-#_493a9666b38b0c0bc9c259eb33704473p6@LRRC32
3.04e-14FFCP PHASE2:Hg19::chr18:73967189..73967200,-#_60887234d10b41421474048312acb827p@chr18:73967189..73967200, -
3.04e-14FFCP PHASE1:Hg19::chr18:73967189..73967200,-#_60887234d10b41421474048312acb827p@chr18:73967189..73967200, -
3.25e-14FFCP PHASE1:Hg19::chr4:8296194..8296199,+#_18c34f99f7a15d09c529f917402ce66cp@chr4:8296194..8296199, +
3.25e-14FFCP PHASE2:Hg19::chr4:8296194..8296199,+#_18c34f99f7a15d09c529f917402ce66cp@chr4:8296194..8296199, +
1.66e-13FFCP PHASE2:Hg19::chr22:43042955..43042964,-#_5abfd694ff80071609ea57ccae2d5192p23@CYB5R3
1.66e-13FFCP PHASE1:Hg19::chr22:43042955..43042964,-#_5abfd694ff80071609ea57ccae2d5192p23@CYB5R3
1.9e-13FFCP PHASE1:Hg19::chr4:111536708..111536738,-#_2ca72d0276781e55eef7cfd3e38cf9a7p1@ENST00000513690
1.9e-13FFCP PHASE2:Hg19::chr4:111536708..111536738,-#_2ca72d0276781e55eef7cfd3e38cf9a7p1@ENST00000513690
3.14e-13FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_a03699ba9023f547ee27a7dfa53e7977p@chr4:1160761..1160774, -
3.14e-13FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_a03699ba9023f547ee27a7dfa53e7977p@chr4:1160761..1160774, -
3.49e-13FFCP PHASE2:Hg19::chr1:246023985..246024006,-#_85fd793b254b7c467261c0b8fb5759b1p@chr1:246023985..246024006, -
3.49e-13FFCP PHASE1:Hg19::chr1:246023985..246024006,-#_85fd793b254b7c467261c0b8fb5759b1p@chr1:246023985..246024006, -
3.61e-13FFCP PHASE2:Hg19::chr11:46316699..46316719,+#_aab2168cb91d60b585f682f7f5d2486ap10@CREB3L1
3.61e-13FFCP PHASE1:Hg19::chr11:46316699..46316719,+#_aab2168cb91d60b585f682f7f5d2486ap10@CREB3L1
4.81e-13FFCP PHASE2:Hg19::chr5:59792105..59792117,-#_05d2cbad9dccaa2f0544724398f841ecp@chr5:59792105..59792117, -
4.81e-13FFCP PHASE1:Hg19::chr5:59792105..59792117,-#_05d2cbad9dccaa2f0544724398f841ecp@chr5:59792105..59792117, -
5.76e-13FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_cf489b8c007a43738fb16ca25ec8ed5bp20@RIMS1
5.76e-13FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_cf489b8c007a43738fb16ca25ec8ed5bp20@RIMS1
8.38e-13FFCP PHASE1:Hg19::chr4:111558118..111558133,-#_38584f2986238d1573bbc4400339c497p5@PITX2
8.38e-13FFCP PHASE2:Hg19::chr4:111558118..111558133,-#_38584f2986238d1573bbc4400339c497p5@PITX2
2.19e-12FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_6b2186e99d4e7c2f9f5ce1274938c24ap@chr4:120446538..120446544, -
2.19e-12FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_6b2186e99d4e7c2f9f5ce1274938c24ap@chr4:120446538..120446544, -
2.19e-12FFCP PHASE1:Hg19::chr3:123522645..123522646,-#_6b2186e99d4e7c2f9f5ce1274938c24ap@chr3:123522645..123522646, -
2.19e-12FFCP PHASE2:Hg19::chr3:123522645..123522646,-#_6b2186e99d4e7c2f9f5ce1274938c24ap@chr3:123522645..123522646, -
2.19e-12FFCP PHASE2:Hg19::chr21:45467027..45467028,-#_6b2186e99d4e7c2f9f5ce1274938c24ap1@H2AFZP1
2.19e-12FFCP PHASE1:Hg19::chr21:45467027..45467028,-#_6b2186e99d4e7c2f9f5ce1274938c24ap1@H2AFZP1
2.19e-12FFCP PHASE1:Hg19::chr4:26862218..26862221,-#_6b2186e99d4e7c2f9f5ce1274938c24ap2@ENST00000467484
2.19e-12FFCP PHASE2:Hg19::chr7:95979117..95979120,+#_6b2186e99d4e7c2f9f5ce1274938c24ap@chr7:95979117..95979120, +
2.19e-12FFCP PHASE2:Hg19::chr4:26862218..26862221,-#_6b2186e99d4e7c2f9f5ce1274938c24ap2@ENST00000467484
2.19e-12FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_6b2186e99d4e7c2f9f5ce1274938c24ap20@ARSJ
2.19e-12FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_6b2186e99d4e7c2f9f5ce1274938c24ap20@ARSJ
2.19e-12FFCP PHASE1:Hg19::chr7:95979117..95979120,+#_6b2186e99d4e7c2f9f5ce1274938c24ap@chr7:95979117..95979120, +
2.45e-12FFCP PHASE2:Hg19::chr7:101461135..101461143,+#_bfd53e1e8420df477f9e6bd2d0edf27bp@chr7:101461135..101461143, +
2.45e-12FFCP PHASE1:Hg19::chr11:10750725..10750729,-#_bfd53e1e8420df477f9e6bd2d0edf27bp@chr11:10750725..10750729, -

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