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|coexpression_dpi_cluster_scores_median=0,0,0.373830726051733,0,0,0.729558479808039,0.653616664343295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0713067902855887,0,0,0.326324995145145,0.331841431191486,0.197068726315728,0.603721673312886,0.317510962857369,0.433003067592653,0.177265236423641,0,0,0,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110544086345426,1.19388133458251,1.12187105931874,1.05132082781977,1.20262064504355,1.08638375812627,0.265446745265214,0,0,0,0,0,0,0,0,0,0,0.531205669335799,0,0,0.0694776635602275,0,0.0901223798974778,0,0.0482820047261801,0.0514097768499148,0.825132870522862,0,0,0,0,0,0.674662332002395,0,0,0.518397256503108,0,0,0,0,0,0,0,0,0,0,0.0406595628641705,0,0,0,0,0,0,0.114414017937594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474582301333955,0.412746633920959,0,0,0.141951942539884,0.256894241075405,0.276349694709285,0.330688419690957,0.462115801446113,0.123654991486488,0.244030982137721,0.203269403191864,0.497566094868122,0.446791645189773,0.318207431965335,0.341404378058948,0,0.046982063026719,0,0.0805006992779881,0,0.130552179598174,0.355016575441984,0.20151745144786,0.459992957186366,0.454990736939581,0.92486393237919,0,0.143987900583469,0.32721800839367,0.383819107666022,0.293298154786566,0.482445766362929,0.51872039119369,0.791573272393978,0.731829019962762,1.42940142816889,1.04327602317245,1.04080818723811,1.1945025455885,1.07054928665837,1.11597935668766,0,0,0,0,0,0,0,0.0774164737207147,0,0,0,0,0,0.00260849319196278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44010627520677,0,0.280344013671734,0.784783929433133,0.684748855664423,0.671100773050887,0.612904543946096,0.936222522744241,0.659438287771044,1.02040697805478,1.10023427050662,1.0120860003294,0,0,0,0,0,0,0,0,0,0.083442441818608,0,0,0,0,0,0,0.522685010172017,0,0,0.150072612586664,0,0,0,0,0,0,0,0.827887513151749,0,0.148182634048186,0.270455862794159,0.310787058879506,0.472063229367991,0.567883155274192,0.650447906822658,0.668812842651414,0.142653754591142,0,0,0,0,0,0,0,0,0.143206333286023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.073294297058821,0.0871588832444397,0.209006745960922,0.120876255993453,0.0978461107777356,0,0,0.0388749848471105,0.0523284672130554,0.180962454233317,0.169172763866184,0.165403796547116,0.141706336142815,0.14986111676545,0.112067779638927,0.128033729919821,0.185379913858661,0.169342968499384,0.110822898586572,0.10799917315244,0.178311376624504,0.0729583017401753,0.101427320830301,0.148421355017489,0.428689755282937,0.0924644954689594,0.144268359582519,0,0.0625582350728301,0.141704700595215,0,0.166685587652774,0.26939249630118,0,0.0865703124974023,0.0905641158318875
|coexpression_dpi_cluster_scores_median=0,0,0.373830726051733,0,0,0.729558479808039,0.653616664343295,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0713067902855887,0,0,0.326324995145145,0.331841431191486,0.197068726315728,0.603721673312886,0.317510962857369,0.433003067592653,0.177265236423641,0,0,0,0,0,0.0667859388724756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110544086345426,1.19388133458251,1.12187105931874,1.05132082781977,1.20262064504355,1.08638375812627,0.265446745265214,0,0,0,0,0,0,0,0,0,0,0.531205669335799,0,0,0.0694776635602275,0,0.0901223798974778,0,0.0482820047261801,0.0514097768499148,0.825132870522862,0,0,0,0,0,0.674662332002395,0,0,0.518397256503108,0,0,0,0,0,0,0,0,0,0,0.0406595628641705,0,0,0,0,0,0,0.114414017937594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474582301333955,0.412746633920959,0,0,0.141951942539884,0.256894241075405,0.276349694709285,0.330688419690957,0.462115801446113,0.123654991486488,0.244030982137721,0.203269403191864,0.497566094868122,0.446791645189773,0.318207431965335,0.341404378058948,0,0.046982063026719,0,0.0805006992779881,0,0.130552179598174,0.355016575441984,0.20151745144786,0.459992957186366,0.454990736939581,0.92486393237919,0,0.143987900583469,0.32721800839367,0.383819107666022,0.293298154786566,0.482445766362929,0.51872039119369,0.791573272393978,0.731829019962762,1.42940142816889,1.04327602317245,1.04080818723811,1.1945025455885,1.07054928665837,1.11597935668766,0,0,0,0,0,0,0,0.0774164737207147,0,0,0,0,0,0.00260849319196278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44010627520677,0,0.280344013671734,0.784783929433133,0.684748855664423,0.671100773050887,0.612904543946096,0.936222522744241,0.659438287771044,1.02040697805478,1.10023427050662,1.0120860003294,0,0,0,0,0,0,0,0,0,0.083442441818608,0,0,0,0,0,0,0.522685010172017,0,0,0.150072612586664,0,0,0,0,0,0,0,0.827887513151749,0,0.148182634048186,0.270455862794159,0.310787058879506,0.472063229367991,0.567883155274192,0.650447906822658,0.668812842651414,0.142653754591142,0,0,0,0,0,0,0,0,0.143206333286023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0480053095083702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.073294297058821,0.0871588832444397,0.209006745960922,0.120876255993453,0.0978461107777356,0,0,0.0388749848471105,0.0523284672130554,0.180962454233317,0.169172763866184,0.165403796547116,0.141706336142815,0.14986111676545,0.112067779638927,0.128033729919821,0.185379913858661,0.169342968499384,0.110822898586572,0.10799917315244,0.178311376624504,0.0729583017401753,0.101427320830301,0.148421355017489,0.428689755282937,0.0924644954689594,0.144268359582519,0,0.0625582350728301,0.141704700595215,0,0.166685587652774,0.26939249630118,0,0.0865703124974023,0.0905641158318875
|gostat_on_MCL_coexpression=GO:0001678;cell glucose homeostasis;0.0173478783104917;15377!GO:0009267;cellular response to starvation;0.0173478783104917;15377!GO:0031669;cellular response to nutrient levels;0.0173478783104917;15377!GO:0042594;response to starvation;0.0173478783104917;15377!GO:0031668;cellular response to extracellular stimulus;0.0173478783104917;15377!GO:0005667;transcription factor complex;0.0173478783104917;72754,15377!GO:0033558;protein deacetylase activity;0.0173478783104917;72754!GO:0004407;histone deacetylase activity;0.0173478783104917;72754!GO:0031667;response to nutrient levels;0.0173478783104917;15377!GO:0019213;deacetylase activity;0.0173478783104917;72754!GO:0044451;nucleoplasm part;0.0173478783104917;72754,15377!GO:0009991;response to extracellular stimulus;0.0173478783104917;15377!GO:0005654;nucleoplasm;0.0173478783104917;72754,15377!GO:0033554;cellular response to stress;0.0173478783104917;15377!GO:0051716;cellular response to stimulus;0.0189225423342078;15377!GO:0000118;histone deacetylase complex;0.0189225423342078;72754!GO:0031981;nuclear lumen;0.0189225423342078;72754,15377!GO:0042593;glucose homeostasis;0.0194297496760142;15377!GO:0033500;carbohydrate homeostasis;0.0194297496760142;15377!GO:0031974;membrane-enclosed lumen;0.0194297496760142;72754,15377!GO:0043233;organelle lumen;0.0194297496760142;72754,15377!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0310715940293953;72754!GO:0044428;nuclear part;0.0310715940293953;72754,15377!
|gostat_on_MCL_coexpression=GO:0001678;cell glucose homeostasis;0.0173478783104917;15377!GO:0009267;cellular response to starvation;0.0173478783104917;15377!GO:0031669;cellular response to nutrient levels;0.0173478783104917;15377!GO:0042594;response to starvation;0.0173478783104917;15377!GO:0031668;cellular response to extracellular stimulus;0.0173478783104917;15377!GO:0005667;transcription factor complex;0.0173478783104917;72754,15377!GO:0033558;protein deacetylase activity;0.0173478783104917;72754!GO:0004407;histone deacetylase activity;0.0173478783104917;72754!GO:0031667;response to nutrient levels;0.0173478783104917;15377!GO:0019213;deacetylase activity;0.0173478783104917;72754!GO:0044451;nucleoplasm part;0.0173478783104917;72754,15377!GO:0009991;response to extracellular stimulus;0.0173478783104917;15377!GO:0005654;nucleoplasm;0.0173478783104917;72754,15377!GO:0033554;cellular response to stress;0.0173478783104917;15377!GO:0051716;cellular response to stimulus;0.0189225423342078;15377!GO:0000118;histone deacetylase complex;0.0189225423342078;72754!GO:0031981;nuclear lumen;0.0189225423342078;72754,15377!GO:0042593;glucose homeostasis;0.0194297496760142;15377!GO:0033500;carbohydrate homeostasis;0.0194297496760142;15377!GO:0031974;membrane-enclosed lumen;0.0194297496760142;72754,15377!GO:0043233;organelle lumen;0.0194297496760142;72754,15377!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0310715940293953;72754!GO:0044428;nuclear part;0.0310715940293953;72754,15377!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0009854!1.62e-17!23;UBERON:0009856!1.62e-17!23;UBERON:0002107!1.08e-16!22;UBERON:0007499!1.08e-16!22;UBERON:0006925!1.08e-16!22;UBERON:0009497!1.08e-16!22;UBERON:0000015!1.08e-16!22;UBERON:0002423!1.08e-16!22;UBERON:0006235!1.08e-16!22;UBERON:0008835!1.08e-16!22;UBERON:0003894!1.08e-16!22;UBERON:0004161!1.08e-16!22;UBERON:0008836!1.08e-16!22;UBERON:0002365!1.20e-13!25;UBERON:0002330!1.20e-13!25;UBERON:0005177!6.75e-12!79;UBERON:0005172!3.25e-11!49;UBERON:0005173!3.25e-11!49;UBERON:0002417!3.25e-11!49;UBERON:0000916!3.25e-11!49;UBERON:0005409!9.44e-11!47;UBERON:0004119!2.55e-10!118;UBERON:0000925!2.55e-10!118;UBERON:0006595!2.55e-10!118;UBERON:0001007!2.57e-10!116;UBERON:0001555!2.57e-10!116;UBERON:0007026!2.57e-10!116;UBERON:0004921!1.73e-09!114;UBERON:0001264!3.09e-09!12;UBERON:0002100!1.24e-08!90;UBERON:0000160!1.63e-08!31;UBERON:0000949!1.08e-07!72;UBERON:0000466!9.33e-07!79
}}
}}

Revision as of 17:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:68613983..68614029,+p2@Rhobtb1
Mm9::chr10:68614034..68614054,+p8@Rhobtb1
Mm9::chr10:68614061..68614075,+p11@Rhobtb1
Mm9::chr4:140172977..140172999,-p5@Arhgef10l
Mm9::chr7:19608891..19608895,-p1@Foxa3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0001678cell glucose homeostasis0.0173478783104917
GO:0009267cellular response to starvation0.0173478783104917
GO:0031669cellular response to nutrient levels0.0173478783104917
GO:0042594response to starvation0.0173478783104917
GO:0031668cellular response to extracellular stimulus0.0173478783104917
GO:0005667transcription factor complex0.0173478783104917
GO:0033558protein deacetylase activity0.0173478783104917
GO:0004407histone deacetylase activity0.0173478783104917
GO:0031667response to nutrient levels0.0173478783104917
GO:0019213deacetylase activity0.0173478783104917
GO:0044451nucleoplasm part0.0173478783104917
GO:0009991response to extracellular stimulus0.0173478783104917
GO:0005654nucleoplasm0.0173478783104917
GO:0033554cellular response to stress0.0173478783104917
GO:0051716cellular response to stimulus0.0189225423342078
GO:0000118histone deacetylase complex0.0189225423342078
GO:0031981nuclear lumen0.0189225423342078
GO:0042593glucose homeostasis0.0194297496760142
GO:0033500carbohydrate homeostasis0.0194297496760142
GO:0031974membrane-enclosed lumen0.0194297496760142
GO:0043233organelle lumen0.0194297496760142
GO:0016811hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides0.0310715940293953
GO:0044428nuclear part0.0310715940293953



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
digestive tract diverticulum1.62e-1723
sac1.62e-1723
liver1.08e-1622
epithelial sac1.08e-1622
digestive gland1.08e-1622
epithelium of foregut-midgut junction1.08e-1622
anatomical boundary1.08e-1622
hepatobiliary system1.08e-1622
foregut-midgut junction1.08e-1622
hepatic diverticulum1.08e-1622
liver primordium1.08e-1622
septum transversum1.08e-1622
liver bud1.08e-1622
exocrine gland1.20e-1325
exocrine system1.20e-1325
trunk region element6.75e-1279
abdomen element3.25e-1149
abdominal segment element3.25e-1149
abdominal segment of trunk3.25e-1149
abdomen3.25e-1149
gastrointestinal system9.44e-1147
endoderm-derived structure2.55e-10118
endoderm2.55e-10118
presumptive endoderm2.55e-10118
digestive system2.57e-10116
digestive tract2.57e-10116
primitive gut2.57e-10116
subdivision of digestive tract1.73e-09114
pancreas3.09e-0912
trunk1.24e-0890
intestine1.63e-0831
endocrine system1.08e-0772
immaterial anatomical entity9.33e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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