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MCL coexpression mm9:3032: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0847446845832032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0856562580541553,0.867520477940048,0.294939832792845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247589497206297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0651189800845078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0421182837367051,0.0509235292940968,0,0,0.143127679930209,0,0.133578586898209,0.114414017937594,0.104536955558926,0.0523528812100954,0.107584785071413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0425379529581421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1324189587654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0388749848471105,0.0269518943326477,0.0242538736058389,0,0,0,0,0,0,0,0,0,0,0.0352754493378881,0.0729583017401753,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002605!2.45e-10!2;CL:0002604!2.45e-10!2;CL:0002453!2.41e-09!8;CL:0000333!1.73e-07!10;CL:0000095!1.73e-07!10;CL:0000243!1.73e-07!10;CL:0000123!1.73e-07!10;CL:0000125!1.73e-07!10;CL:0000030!1.73e-07!10;CL:0000339!1.73e-07!10;CL:0000128!2.26e-07!6;CL:0000126!2.26e-07!6;CL:0000127!2.26e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000970!3.24e-17!9;UBERON:0000019!3.24e-17!9;UBERON:0000047!3.24e-17!9;UBERON:0010312!3.24e-17!9;UBERON:0004088!3.24e-17!9;UBERON:0002104!3.24e-17!9;UBERON:0001456!3.24e-17!9;UBERON:0003072!3.24e-17!9;UBERON:0004128!3.24e-17!9;UBERON:0003071!3.24e-17!9;UBERON:0001444!5.33e-14!11;UBERON:0000020!8.60e-13!12;UBERON:0001032!8.60e-13!12;UBERON:0004456!8.60e-13!12;UBERON:0000033!9.06e-12!13;UBERON:0005085!9.06e-12!13;UBERON:0001343!4.32e-09!2;UBERON:0004910!4.32e-09!2;UBERON:0004909!4.32e-09!2;UBERON:0005154!4.32e-09!2;UBERON:0005295!4.32e-09!2;UBERON:0005297!4.32e-09!2;UBERON:0005294!4.32e-09!2;UBERON:0010141!4.32e-09!2;UBERON:0005891!4.32e-09!2
}}
}}

Revision as of 19:25, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:15957833..15957836,-p@chr16:15957833..15957836
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Mm9::chr19:8788930..8788940,-p@chr19:8788930..8788940
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Mm9::chr1:169619168..169619180,-p@chr1:169619168..169619180
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
eye3.24e-179
camera-type eye3.24e-179
simple eye3.24e-179
immature eye3.24e-179
ocular region3.24e-179
visual system3.24e-179
face3.24e-179
optic cup3.24e-179
optic vesicle3.24e-179
eye primordium3.24e-179
subdivision of head5.33e-1411
sense organ8.60e-1312
sensory system8.60e-1312
entire sense organ system8.60e-1312
head9.06e-1213
ectodermal placode9.06e-1213
seminiferous tubule of testis4.32e-092
epithelium of male gonad4.32e-092
epithelium of gonad4.32e-092
epithelial cord4.32e-092
sex cord4.32e-092
testis sex cord4.32e-092
genital ridge4.32e-092
primitive sex cord of indifferent gonad4.32e-092
coelomic epithelium4.32e-092


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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