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MCL coexpression mm9:3154: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002365!3.18e-10!25;UBERON:0002330!3.18e-10!25;UBERON:0005177!3.37e-10!79;UBERON:0002107!1.43e-09!22;UBERON:0007499!1.43e-09!22;UBERON:0006925!1.43e-09!22;UBERON:0009497!1.43e-09!22;UBERON:0000015!1.43e-09!22;UBERON:0002423!1.43e-09!22;UBERON:0006235!1.43e-09!22;UBERON:0008835!1.43e-09!22;UBERON:0003894!1.43e-09!22;UBERON:0004161!1.43e-09!22;UBERON:0008836!1.43e-09!22;UBERON:0005172!1.58e-09!49;UBERON:0005173!1.58e-09!49;UBERON:0002417!1.58e-09!49;UBERON:0000916!1.58e-09!49;UBERON:0002100!1.92e-09!90;UBERON:0009854!5.23e-09!23;UBERON:0009856!5.23e-09!23;UBERON:0005256!6.39e-08!45;UBERON:0002075!4.11e-07!19;UBERON:0003914!5.68e-07!47
}}
}}

Revision as of 19:37, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr18:63851933..63851944,-p6@Txnl1
Mm9::chr18:63851945..63851956,-p4@Txnl1
Mm9::chr18:63851963..63851992,-p1@Txnl1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
exocrine gland3.18e-1025
exocrine system3.18e-1025
trunk region element3.37e-1079
liver1.43e-0922
epithelial sac1.43e-0922
digestive gland1.43e-0922
epithelium of foregut-midgut junction1.43e-0922
anatomical boundary1.43e-0922
hepatobiliary system1.43e-0922
foregut-midgut junction1.43e-0922
hepatic diverticulum1.43e-0922
liver primordium1.43e-0922
septum transversum1.43e-0922
liver bud1.43e-0922
abdomen element1.58e-0949
abdominal segment element1.58e-0949
abdominal segment of trunk1.58e-0949
abdomen1.58e-0949
trunk1.92e-0990
digestive tract diverticulum5.23e-0923
sac5.23e-0923
trunk mesenchyme6.39e-0845
viscus4.11e-0719
epithelial tube5.68e-0747


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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