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MCL coexpression mm9:3296: Difference between revisions

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|gostat_on_MCL_coexpression=GO:0016805;dipeptidase activity;0.0245351698811404;74616!
|gostat_on_MCL_coexpression=GO:0016805;dipeptidase activity;0.0245351698811404;74616!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005172!5.82e-13!49;UBERON:0005173!5.82e-13!49;UBERON:0002417!5.82e-13!49;UBERON:0000916!5.82e-13!49;UBERON:0005256!2.37e-12!45;UBERON:0002100!3.99e-12!90;UBERON:0002365!7.71e-12!25;UBERON:0002330!7.71e-12!25;UBERON:0003104!7.75e-12!61;UBERON:0009142!7.75e-12!61;UBERON:0002107!9.19e-12!22;UBERON:0007499!9.19e-12!22;UBERON:0006925!9.19e-12!22;UBERON:0009497!9.19e-12!22;UBERON:0000015!9.19e-12!22;UBERON:0002423!9.19e-12!22;UBERON:0006235!9.19e-12!22;UBERON:0008835!9.19e-12!22;UBERON:0003894!9.19e-12!22;UBERON:0004161!9.19e-12!22;UBERON:0008836!9.19e-12!22;UBERON:0009569!2.40e-11!66;UBERON:0005177!2.99e-11!79;UBERON:0003914!4.04e-11!47;UBERON:0009854!4.94e-11!23;UBERON:0009856!4.94e-11!23;UBERON:0000466!1.69e-09!79;UBERON:0004111!5.18e-07!122
}}
}}

Revision as of 19:50, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr2:103867980..103868025,+p1@Fbxo3
Mm9::chr2:73150690..73150722,+p1@Scrn3
Mm9::chr2:73150730..73150745,+p2@Scrn3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016805dipeptidase activity0.0245351698811404



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
abdomen element5.82e-1349
abdominal segment element5.82e-1349
abdominal segment of trunk5.82e-1349
abdomen5.82e-1349
trunk mesenchyme2.37e-1245
trunk3.99e-1290
exocrine gland7.71e-1225
exocrine system7.71e-1225
mesenchyme7.75e-1261
entire embryonic mesenchyme7.75e-1261
liver9.19e-1222
epithelial sac9.19e-1222
digestive gland9.19e-1222
epithelium of foregut-midgut junction9.19e-1222
anatomical boundary9.19e-1222
hepatobiliary system9.19e-1222
foregut-midgut junction9.19e-1222
hepatic diverticulum9.19e-1222
liver primordium9.19e-1222
septum transversum9.19e-1222
liver bud9.19e-1222
subdivision of trunk2.40e-1166
trunk region element2.99e-1179
epithelial tube4.04e-1147
digestive tract diverticulum4.94e-1123
sac4.94e-1123
immaterial anatomical entity1.69e-0979
anatomical conduit5.18e-07122


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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