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MCL coexpression mm9:3555: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005172!5.05e-12!49;UBERON:0005173!5.05e-12!49;UBERON:0002417!5.05e-12!49;UBERON:0000916!5.05e-12!49;UBERON:0002410!2.99e-11!9;UBERON:0000949!1.07e-09!72;UBERON:0005177!3.94e-09!79;UBERON:0000010!1.26e-08!11;UBERON:0003104!9.12e-08!61;UBERON:0009142!9.12e-08!61;UBERON:0002368!2.33e-07!60;UBERON:0002107!2.37e-07!22;UBERON:0007499!2.37e-07!22;UBERON:0006925!2.37e-07!22;UBERON:0009497!2.37e-07!22;UBERON:0000015!2.37e-07!22;UBERON:0002423!2.37e-07!22;UBERON:0006235!2.37e-07!22;UBERON:0008835!2.37e-07!22;UBERON:0003894!2.37e-07!22;UBERON:0004161!2.37e-07!22;UBERON:0008836!2.37e-07!22;UBERON:0009569!4.31e-07!66;UBERON:0009854!7.75e-07!23;UBERON:0009856!7.75e-07!23;UBERON:0000007!9.57e-07!8;UBERON:0003296!9.57e-07!8;UBERON:0010133!9.57e-07!8
|ontology_enrichment_uberon=UBERON:0005172!5.05e-12!49;UBERON:0005173!5.05e-12!49;UBERON:0002417!5.05e-12!49;UBERON:0000916!5.05e-12!49;UBERON:0002410!2.99e-11!9;UBERON:0000949!1.07e-09!72;UBERON:0005177!3.94e-09!79;UBERON:0000010!1.26e-08!11;UBERON:0003104!9.12e-08!61;UBERON:0009142!9.12e-08!61;UBERON:0002368!2.33e-07!60;UBERON:0002107!2.37e-07!22;UBERON:0007499!2.37e-07!22;UBERON:0006925!2.37e-07!22;UBERON:0009497!2.37e-07!22;UBERON:0000015!2.37e-07!22;UBERON:0002423!2.37e-07!22;UBERON:0006235!2.37e-07!22;UBERON:0008835!2.37e-07!22;UBERON:0003894!2.37e-07!22;UBERON:0004161!2.37e-07!22;UBERON:0008836!2.37e-07!22;UBERON:0009569!4.31e-07!66;UBERON:0009854!7.75e-07!23;UBERON:0009856!7.75e-07!23;UBERON:0000007!9.57e-07!8;UBERON:0003296!9.57e-07!8;UBERON:0010133!9.57e-07!8
|tfbs_overrepresentation_for_novel_motifs=0.752782,0.193418,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.66329,0.870507,0.906098,2.05331,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.876292,0.679146,0.275782,0.932027,1.43154,0.731217,0.963352,0.437236,0.841386,1.55113,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.144706,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.261619,0.610669,0.474221,0.788421,1.05665,0.859154,0.235354,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,1.83166,1.86424,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,2.64303,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,3.3325,0.509215,0.464141,1.26539,1.05692,0.352122,2.37055,1.24872,1.37854,1.12409,4.12182,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,2.42515,0.212464,1.88801,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,2.19629,1.65529,0.751419,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.421338
}}
}}

Revision as of 23:05, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr6:30673491..30673503,+p7@Mest
Mm9::chr6:30673522..30673534,+p3@Mest
Mm9::chr6:30673541..30673552,+p9@Mest


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
autonomic neuron2.99e-119

Uber Anatomy
Ontology termp-valuen
abdomen element5.05e-1249
abdominal segment element5.05e-1249
abdominal segment of trunk5.05e-1249
abdomen5.05e-1249
autonomic nervous system2.99e-119
endocrine system1.07e-0972
trunk region element3.94e-0979
peripheral nervous system1.26e-0811
mesenchyme9.12e-0861
entire embryonic mesenchyme9.12e-0861
endocrine gland2.33e-0760
liver2.37e-0722
epithelial sac2.37e-0722
digestive gland2.37e-0722
epithelium of foregut-midgut junction2.37e-0722
anatomical boundary2.37e-0722
hepatobiliary system2.37e-0722
foregut-midgut junction2.37e-0722
hepatic diverticulum2.37e-0722
liver primordium2.37e-0722
septum transversum2.37e-0722
liver bud2.37e-0722
subdivision of trunk4.31e-0766
digestive tract diverticulum7.75e-0723
sac7.75e-0723
pituitary gland9.57e-078
gland of diencephalon9.57e-078
neuroendocrine gland9.57e-078


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}