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MCL coexpression mm9:3589: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005177!5.17e-13!79;UBERON:0000466!6.02e-11!79;UBERON:0002100!4.26e-10!90;UBERON:0000468!1.23e-09!333;UBERON:0009569!1.59e-09!66;UBERON:0005153!8.30e-09!17;UBERON:0002365!1.10e-08!25;UBERON:0002330!1.10e-08!25;UBERON:0002048!1.20e-08!14;UBERON:0000117!1.20e-08!14;UBERON:0000171!1.20e-08!14;UBERON:0000170!1.20e-08!14;UBERON:0005597!1.20e-08!14;UBERON:0000118!1.20e-08!14;UBERON:0009854!1.21e-08!23;UBERON:0009856!1.21e-08!23;UBERON:0003914!2.10e-08!47;UBERON:0002107!3.17e-08!22;UBERON:0007499!3.17e-08!22;UBERON:0006925!3.17e-08!22;UBERON:0009497!3.17e-08!22;UBERON:0000015!3.17e-08!22;UBERON:0002423!3.17e-08!22;UBERON:0006235!3.17e-08!22;UBERON:0008835!3.17e-08!22;UBERON:0003894!3.17e-08!22;UBERON:0004161!3.17e-08!22;UBERON:0008836!3.17e-08!22;UBERON:0000475!5.88e-07!150
|ontology_enrichment_uberon=UBERON:0005177!5.17e-13!79;UBERON:0000466!6.02e-11!79;UBERON:0002100!4.26e-10!90;UBERON:0000468!1.23e-09!333;UBERON:0009569!1.59e-09!66;UBERON:0005153!8.30e-09!17;UBERON:0002365!1.10e-08!25;UBERON:0002330!1.10e-08!25;UBERON:0002048!1.20e-08!14;UBERON:0000117!1.20e-08!14;UBERON:0000171!1.20e-08!14;UBERON:0000170!1.20e-08!14;UBERON:0005597!1.20e-08!14;UBERON:0000118!1.20e-08!14;UBERON:0009854!1.21e-08!23;UBERON:0009856!1.21e-08!23;UBERON:0003914!2.10e-08!47;UBERON:0002107!3.17e-08!22;UBERON:0007499!3.17e-08!22;UBERON:0006925!3.17e-08!22;UBERON:0009497!3.17e-08!22;UBERON:0000015!3.17e-08!22;UBERON:0002423!3.17e-08!22;UBERON:0006235!3.17e-08!22;UBERON:0008835!3.17e-08!22;UBERON:0003894!3.17e-08!22;UBERON:0004161!3.17e-08!22;UBERON:0008836!3.17e-08!22;UBERON:0000475!5.88e-07!150
|tfbs_overrepresentation_for_novel_motifs=0.752782,1.07244,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,1.47843,0,1.14208,0.578045,1.138,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.380786,0.825437,1.24901,0.575271,0.411696,0.608816,0.872889,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,1.33334,0.610669,0.156582,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.971403,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,2.73825,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,0.402065,0.411601,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,0.99201,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,1.17262,2.8238,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,0.589976,0.38417,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,0.622823,1.77347,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.421338
}}
}}

Revision as of 23:08, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr7:118006435..118006452,-p2@Lyve1
Mm9::chr7:118006458..118006474,-p1@Lyve1
Mm9::chrX:131221629..131221645,+p@chrX:131221629..131221645
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
trunk region element5.17e-1379
immaterial anatomical entity6.02e-1179
trunk4.26e-1090
multi-cellular organism1.23e-09333
subdivision of trunk1.59e-0966
epithelial bud8.30e-0917
exocrine gland1.10e-0825
exocrine system1.10e-0825
lung1.20e-0814
respiratory tube1.20e-0814
respiration organ1.20e-0814
pair of lungs1.20e-0814
lung primordium1.20e-0814
lung bud1.20e-0814
digestive tract diverticulum1.21e-0823
sac1.21e-0823
epithelial tube2.10e-0847
liver3.17e-0822
epithelial sac3.17e-0822
digestive gland3.17e-0822
epithelium of foregut-midgut junction3.17e-0822
anatomical boundary3.17e-0822
hepatobiliary system3.17e-0822
foregut-midgut junction3.17e-0822
hepatic diverticulum3.17e-0822
liver primordium3.17e-0822
septum transversum3.17e-0822
liver bud3.17e-0822
organism subdivision5.88e-07150


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}