FFCP PHASE1:Hg19::chr11:82708435..82708472,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=27314|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9770|TSSclassifier=S|UniProt=E9PLM3,E9PNB9|association_with_transcript=0bp_to_ENST00000525117,ENST00000532548,uc009yvg.1_5end|coexpression_cluster_id=C25|description=CAGE_peak_7_at_RAB30_5end|id=chr11:82708435..82708472,-|ontology_enrichment_celltype=CL:0000945!3.55e-14!24;CL:0000826!3.55e-14!24;CL:0000542!5.23e-10!53;CL:0000051!5.23e-10!53;CL:0000838!5.63e-09!52|ontology_enrichment_celltype_v019=CL:0000945;1.04e-16;24|ontology_enrichment_celltype_v019_2=CL:0000945,8.25e-17,24;CL:0000826,8.25e-17,24;CL:0000542,5.67e-11,53;CL:0000051,5.67e-11,53;CL:0000838,4.52e-09,52|ontology_enrichment_development_v019=UBERON:0004872;5.52e-09;7!UBERON:0001045;2.52e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:12603;4.40e-08;1!DOID:4960;8.69e-08;1!DOID:0070004;8.69e-08;1|ontology_enrichment_disease_v019_2=DOID:12603,5.79e-08,1;DOID:4960,7.10e-08,1;DOID:0070004,7.10e-08,1|ontology_enrichment_uberon=UBERON:0007023!2.60e-13!115;UBERON:0005409!4.48e-08!35;UBERON:0004177!1.01e-07!7;UBERON:0002106!1.83e-07!3;UBERON:0004854!1.83e-07!3;UBERON:0009034!1.83e-07!3;UBERON:0002095!1.83e-07!3;UBERON:0004782!1.83e-07!3;UBERON:0003281!1.83e-07!3;UBERON:0009664!1.83e-07!3;UBERON:0002296!1.83e-07!3;UBERON:0005602!1.83e-07!3;UBERON:0001179!1.83e-07!3;UBERON:0006293!1.83e-07!3|ontology_enrichment_uberon_v019=UBERON:0000007;1.80e-14;2!UBERON:0002106;9.38e-10;3!UBERON:0000160;1.87e-09;17!UBERON:0002372;2.52e-08;1!UBERON:0001154;2.52e-08;1!UBERON:0001153;2.52e-08;1!UBERON:0009854;2.52e-08;1!UBERON:0001961;2.52e-08;1!UBERON:0001744;2.52e-08;1!UBERON:0001042;2.52e-08;1!UBERON:0001735;2.52e-08;1!UBERON:0004921;3.74e-08;33!UBERON:0000029;8.69e-08;1!UBERON:0002171;8.69e-08;1!UBERON:0006518;8.69e-08;1!UBERON:0008949;8.69e-08;1!UBERON:0000101;8.69e-08;1!UBERON:0002167;8.69e-08;1!UBERON:0003296;1.14e-07;4!UBERON:0010133;1.14e-07;4!UBERON:0001155;2.37e-07;9!UBERON:0005409;2.42e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0000007,2.06e-14,2;UBERON:0005409,5.29e-12,25;UBERON:0002106,1.03e-09,3;UBERON:0004854,1.03e-09,3;UBERON:0009034,1.03e-09,3;UBERON:0002095,1.03e-09,3;UBERON:0004782,1.03e-09,3;UBERON:0003281,1.03e-09,3;UBERON:0009664,1.03e-09,3;UBERON:0002296,1.03e-09,3;UBERON:0005602,1.03e-09,3;UBERON:0001179,1.03e-09,3;UBERON:0006293,1.03e-09,3;UBERON:0000160,1.98e-09,17;UBERON:0002372,2.52e-08,1;UBERON:0001961,2.52e-08,1;UBERON:0001744,2.52e-08,1;UBERON:0001735,2.52e-08,1;UBERON:0001154,2.71e-08,1;UBERON:0001153,2.71e-08,1;UBERON:0001045,2.71e-08,1;UBERON:0002171,7.59e-08,1;UBERON:0006518,7.59e-08,1;UBERON:0008949,7.59e-08,1;UBERON:0000101,7.59e-08,1;UBERON:0002167,7.59e-08,1;UBERON:0000029,8.12e-08,1;UBERON:0003296,1.22e-07,4;UBERON:0010133,1.22e-07,4;UBERON:0007023,1.78e-07,114;UBERON:0001155,2.48e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36881557818649,2.70931945184821,2.91229890860613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,1.76171156811282,1.14681968437569,0,0.560508562981536,0,0,0,0,0,3.58514493296949,0.473447805734733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04383492638291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,4.14425873296722,0,0,6.64657949489775,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0.718061155278177,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0.995261931078505,5.74974169271705,1.22206028986725,0.889563386041866,1.72989514525104,0.730953646538188,0,0,0,0,0,0,0,3.62972148145992,0,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.426905989478705,0,0,0,0.171594997861965,0,0,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0.788662062837943,0,0.229160424011684,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0.423366660328922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=27314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9770 | |||
|TSSclassifier=S | |||
|UniProt=E9PLM3,E9PNB9 | |||
|association_with_transcript=0bp_to_ENST00000525117,ENST00000532548,uc009yvg.1_5end | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_7_at_RAB30_5end | |||
|id=chr11:82708435..82708472,- | |||
|ontology_enrichment_celltype=CL:0000945!3.55e-14!24;CL:0000826!3.55e-14!24;CL:0000542!5.23e-10!53;CL:0000051!5.23e-10!53;CL:0000838!5.63e-09!52 | |||
|ontology_enrichment_celltype_v019=CL:0000945;1.04e-16;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,8.25e-17,24;CL:0000826,8.25e-17,24;CL:0000542,5.67e-11,53;CL:0000051,5.67e-11,53;CL:0000838,4.52e-09,52 | |||
|ontology_enrichment_development_v019=UBERON:0004872;5.52e-09;7!UBERON:0001045;2.52e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:12603;4.40e-08;1!DOID:4960;8.69e-08;1!DOID:0070004;8.69e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:12603,5.79e-08,1;DOID:4960,7.10e-08,1;DOID:0070004,7.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.60e-13!115;UBERON:0005409!4.48e-08!35;UBERON:0004177!1.01e-07!7;UBERON:0002106!1.83e-07!3;UBERON:0004854!1.83e-07!3;UBERON:0009034!1.83e-07!3;UBERON:0002095!1.83e-07!3;UBERON:0004782!1.83e-07!3;UBERON:0003281!1.83e-07!3;UBERON:0009664!1.83e-07!3;UBERON:0002296!1.83e-07!3;UBERON:0005602!1.83e-07!3;UBERON:0001179!1.83e-07!3;UBERON:0006293!1.83e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000007;1.80e-14;2!UBERON:0002106;9.38e-10;3!UBERON:0000160;1.87e-09;17!UBERON:0002372;2.52e-08;1!UBERON:0001154;2.52e-08;1!UBERON:0001153;2.52e-08;1!UBERON:0009854;2.52e-08;1!UBERON:0001961;2.52e-08;1!UBERON:0001744;2.52e-08;1!UBERON:0001042;2.52e-08;1!UBERON:0001735;2.52e-08;1!UBERON:0004921;3.74e-08;33!UBERON:0000029;8.69e-08;1!UBERON:0002171;8.69e-08;1!UBERON:0006518;8.69e-08;1!UBERON:0008949;8.69e-08;1!UBERON:0000101;8.69e-08;1!UBERON:0002167;8.69e-08;1!UBERON:0003296;1.14e-07;4!UBERON:0010133;1.14e-07;4!UBERON:0001155;2.37e-07;9!UBERON:0005409;2.42e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,2.06e-14,2;UBERON:0005409,5.29e-12,25;UBERON:0002106,1.03e-09,3;UBERON:0004854,1.03e-09,3;UBERON:0009034,1.03e-09,3;UBERON:0002095,1.03e-09,3;UBERON:0004782,1.03e-09,3;UBERON:0003281,1.03e-09,3;UBERON:0009664,1.03e-09,3;UBERON:0002296,1.03e-09,3;UBERON:0005602,1.03e-09,3;UBERON:0001179,1.03e-09,3;UBERON:0006293,1.03e-09,3;UBERON:0000160,1.98e-09,17;UBERON:0002372,2.52e-08,1;UBERON:0001961,2.52e-08,1;UBERON:0001744,2.52e-08,1;UBERON:0001735,2.52e-08,1;UBERON:0001154,2.71e-08,1;UBERON:0001153,2.71e-08,1;UBERON:0001045,2.71e-08,1;UBERON:0002171,7.59e-08,1;UBERON:0006518,7.59e-08,1;UBERON:0008949,7.59e-08,1;UBERON:0000101,7.59e-08,1;UBERON:0002167,7.59e-08,1;UBERON:0000029,8.12e-08,1;UBERON:0003296,1.22e-07,4;UBERON:0010133,1.22e-07,4;UBERON:0007023,1.78e-07,114;UBERON:0001155,2.48e-07,9 | |||
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|short_description=p7@RAB30 | |||
}} |
Revision as of 19:55, 10 September 2013
Short description: | p7@RAB30 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_RAB30_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000525117, ENST00000532548, uc009yvg.1_5end |
EntrezGene: | RAB30 |
HGNC: | 9770 |
UniProt: | E9PLM3E9PNB9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 8.25e-17 | 24 |
pro-B cell | 8.25e-17 | 24 |
lymphocyte | 5.67e-11 | 53 |
common lymphoid progenitor | 5.67e-11 | 53 |
lymphoid lineage restricted progenitor cell | 4.52e-09 | 52 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 2.06e-14 | 2 |
gastrointestinal system | 5.29e-12 | 25 |
spleen | 1.03e-09 | 3 |
gastrointestinal system mesentery | 1.03e-09 | 3 |
stomach region | 1.03e-09 | 3 |
mesentery | 1.03e-09 | 3 |
gastrointestinal system serosa | 1.03e-09 | 3 |
mesentery of stomach | 1.03e-09 | 3 |
gut mesentery | 1.03e-09 | 3 |
dorsal mesentery | 1.03e-09 | 3 |
dorsal mesogastrium | 1.03e-09 | 3 |
peritoneal cavity | 1.03e-09 | 3 |
spleen primordium | 1.03e-09 | 3 |
intestine | 1.98e-09 | 17 |
tonsil | 2.52e-08 | 1 |
mucosa-associated lymphoid tissue | 2.52e-08 | 1 |
lymphoid tissue | 2.52e-08 | 1 |
tonsillar ring | 2.52e-08 | 1 |
vermiform appendix | 2.71e-08 | 1 |
caecum | 2.71e-08 | 1 |
midgut | 2.71e-08 | 1 |
lower lobe of right lung | 7.59e-08 | 1 |
right lung lobe | 7.59e-08 | 1 |
lower lobe of lung | 7.59e-08 | 1 |
lobe of lung | 7.59e-08 | 1 |
right lung | 7.59e-08 | 1 |
lymph node | 8.12e-08 | 1 |
gland of diencephalon | 1.22e-07 | 4 |
neuroendocrine gland | 1.22e-07 | 4 |
adult organism | 1.78e-07 | 114 |
colon | 2.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
acute leukemia | 5.79e-08 | 1 |
bone marrow cancer | 7.10e-08 | 1 |
myeloma | 7.10e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.