FFCP PHASE1:Hg19::chr12:113905899..113905917,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:113905899..113905917,-|id=chr12:113905899..113905917,-|ontology_enrichment_celltype=CL:0000066!2.74e-29!254;CL:0002076!1.11e-24!43;CL:0000223!6.35e-18!59;CL:0002368!4.12e-15!13;CL:0000244!2.52e-11!4;CL:0000731!2.52e-11!4;CL:0002251!2.02e-09!21;CL:0000076!2.49e-09!62;CL:0002328!1.26e-08!3;CL:0002231!2.34e-08!3;CL:0002541!7.12e-08!3;CL:0002202!4.47e-07!9;CL:0002632!4.47e-07!9|ontology_enrichment_celltype_v019=CL:0002368;9.05e-30;13!CL:0000244;9.14e-21;4!CL:0000731;9.14e-21;4!CL:0002076;7.52e-18;42!CL:0002328;1.99e-15;3!CL:0002202;1.74e-13;9!CL:0002632;1.74e-13;9!CL:0002231;1.20e-07;3!CL:0000307;1.90e-07;3!CL:0002541;2.94e-07;3|ontology_enrichment_celltype_v019_2=CL:0002368,7.42e-30,13;CL:0002076,1.67e-23,42;CL:0000244,5.83e-21,4;CL:0000731,5.83e-21,4;CL:0000066,1.17e-19,253;CL:0000223,1.82e-18,58;CL:0002328,1.34e-15,3;CL:0002202,1.43e-13,9;CL:0002632,1.43e-13,9;CL:0000076,8.15e-09,63;CL:0002231,1.03e-07,3;CL:0000068,1.93e-07,3;CL:0000069,1.93e-07,3;CL:0000307,1.93e-07,3;CL:0000377,1.93e-07,3;CL:0002541,3.56e-07,3|ontology_enrichment_development_v019=CL:0000223;3.64e-09;58!CL:0000377;1.90e-07;3|ontology_enrichment_disease=DOID:1749!6.09e-17!14;DOID:305!3.64e-10!106;DOID:0050687!3.62e-09!143|ontology_enrichment_disease_v019=DOID:1749;1.16e-27;14|ontology_enrichment_disease_v019_2=DOID:1749,1.30e-27,14|ontology_enrichment_uberon=UBERON:0005631!5.99e-12!14;UBERON:0000158!5.99e-12!14;UBERON:0003124!9.34e-12!7;UBERON:0004119!8.30e-10!169;UBERON:0000925!8.30e-10!169;UBERON:0006595!8.30e-10!169;UBERON:0000365!4.96e-09!5;UBERON:0004815!1.26e-08!3;UBERON:0002031!1.26e-08!3;UBERON:0003729!2.55e-08!5;UBERON:0000476!7.12e-08!3;UBERON:0000920!7.12e-08!3;UBERON:0005910!1.69e-07!6|ontology_enrichment_uberon_v019=UBERON:0000365;1.21e-16;5!UBERON:0004815;1.99e-15;3!UBERON:0002031;1.99e-15;3!UBERON:0005910;6.86e-14;6!UBERON:0003343;3.56e-12;4!UBERON:0004785;3.56e-12;4!UBERON:0002185;1.88e-09;5!UBERON:0000065;3.36e-09;44!UBERON:0000974;2.92e-08;6!UBERON:0005911;3.76e-08;36!UBERON:0007196;5.46e-08;15!UBERON:0001558;5.46e-08;15!UBERON:0003124;2.94e-07;3!UBERON:0000920;2.94e-07;3!UBERON:0000486;5.67e-07;12!UBERON:0000485;7.15e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0000365,8.46e-17,5;UBERON:0004815,1.34e-15,3;UBERON:0002031,1.34e-15,3;UBERON:0005910,5.10e-14,6;UBERON:0003343,4.07e-12,4;UBERON:0004785,4.07e-12,4;UBERON:0000065,5.71e-11,54;UBERON:0001004,2.58e-10,74;UBERON:0004119,4.13e-10,160;UBERON:0000925,4.13e-10,160;UBERON:0006595,4.13e-10,160;UBERON:0002185,1.49e-09,5;UBERON:0007196,4.88e-08,15;UBERON:0001558,4.88e-08,15;UBERON:0005153,2.05e-07,37;UBERON:0000920,3.56e-07,3;UBERON:0005157,5.26e-07,47|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.204823675113,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0.329250856225877,0,1.10581869652794,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,1.34337784054272,0.871901815541886,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.606255142892519,0,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,1.60405176242628,5.24861636934609,0,0,0,0.451199612907412,0.385076685522074,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,4.13212288402445,3.0750410778417,2.67986696238627,5.0578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,0,2.17781969722645,0,4.3050537267123,1.68471475667626,8.42517291719684,3.67557440331135,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,3.07303986298317,0,0,0,0,0,0,0,0,0,0,3.48559360696508,0,0,0,0.179515288819544,0.108647371922008,1.27600463892768,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,1.76098157038881,0,0,0,0,0,0.751617097072463,0,0,0,0,0,0,0,0.520679215005393,0,2.61177619741208,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0.864542502924636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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:113905899..113905917,- | |||
|id=chr12:113905899..113905917,- | |||
|ontology_enrichment_celltype=CL:0000066!2.74e-29!254;CL:0002076!1.11e-24!43;CL:0000223!6.35e-18!59;CL:0002368!4.12e-15!13;CL:0000244!2.52e-11!4;CL:0000731!2.52e-11!4;CL:0002251!2.02e-09!21;CL:0000076!2.49e-09!62;CL:0002328!1.26e-08!3;CL:0002231!2.34e-08!3;CL:0002541!7.12e-08!3;CL:0002202!4.47e-07!9;CL:0002632!4.47e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002368;9.05e-30;13!CL:0000244;9.14e-21;4!CL:0000731;9.14e-21;4!CL:0002076;7.52e-18;42!CL:0002328;1.99e-15;3!CL:0002202;1.74e-13;9!CL:0002632;1.74e-13;9!CL:0002231;1.20e-07;3!CL:0000307;1.90e-07;3!CL:0002541;2.94e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,7.42e-30,13;CL:0002076,1.67e-23,42;CL:0000244,5.83e-21,4;CL:0000731,5.83e-21,4;CL:0000066,1.17e-19,253;CL:0000223,1.82e-18,58;CL:0002328,1.34e-15,3;CL:0002202,1.43e-13,9;CL:0002632,1.43e-13,9;CL:0000076,8.15e-09,63;CL:0002231,1.03e-07,3;CL:0000068,1.93e-07,3;CL:0000069,1.93e-07,3;CL:0000307,1.93e-07,3;CL:0000377,1.93e-07,3;CL:0002541,3.56e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;3.64e-09;58!CL:0000377;1.90e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!6.09e-17!14;DOID:305!3.64e-10!106;DOID:0050687!3.62e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.16e-27;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.30e-27,14 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.99e-12!14;UBERON:0000158!5.99e-12!14;UBERON:0003124!9.34e-12!7;UBERON:0004119!8.30e-10!169;UBERON:0000925!8.30e-10!169;UBERON:0006595!8.30e-10!169;UBERON:0000365!4.96e-09!5;UBERON:0004815!1.26e-08!3;UBERON:0002031!1.26e-08!3;UBERON:0003729!2.55e-08!5;UBERON:0000476!7.12e-08!3;UBERON:0000920!7.12e-08!3;UBERON:0005910!1.69e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;1.21e-16;5!UBERON:0004815;1.99e-15;3!UBERON:0002031;1.99e-15;3!UBERON:0005910;6.86e-14;6!UBERON:0003343;3.56e-12;4!UBERON:0004785;3.56e-12;4!UBERON:0002185;1.88e-09;5!UBERON:0000065;3.36e-09;44!UBERON:0000974;2.92e-08;6!UBERON:0005911;3.76e-08;36!UBERON:0007196;5.46e-08;15!UBERON:0001558;5.46e-08;15!UBERON:0003124;2.94e-07;3!UBERON:0000920;2.94e-07;3!UBERON:0000486;5.67e-07;12!UBERON:0000485;7.15e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,8.46e-17,5;UBERON:0004815,1.34e-15,3;UBERON:0002031,1.34e-15,3;UBERON:0005910,5.10e-14,6;UBERON:0003343,4.07e-12,4;UBERON:0004785,4.07e-12,4;UBERON:0000065,5.71e-11,54;UBERON:0001004,2.58e-10,74;UBERON:0004119,4.13e-10,160;UBERON:0000925,4.13e-10,160;UBERON:0006595,4.13e-10,160;UBERON:0002185,1.49e-09,5;UBERON:0007196,4.88e-08,15;UBERON:0001558,4.88e-08,15;UBERON:0005153,2.05e-07,37;UBERON:0000920,3.56e-07,3;UBERON:0005157,5.26e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.204823675113,5.17655614233503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0,0.121973706129595,0,0.232387885739037,0.207322110030741,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0.329250856225877,0,1.10581869652794,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,1.34337784054272,0.871901815541886,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.606255142892519,0,1.81434175997808,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,1.60405176242628,5.24861636934609,0,0,0,0.451199612907412,0.385076685522074,0,1.46139224653261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,4.13212288402445,3.0750410778417,2.67986696238627,5.0578890427775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53955380360819,0,2.17781969722645,0,4.3050537267123,1.68471475667626,8.42517291719684,3.67557440331135,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,3.07303986298317,0,0,0,0,0,0,0,0,0,0,3.48559360696508,0,0,0,0.179515288819544,0.108647371922008,1.27600463892768,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,1.76098157038881,0,0,0,0,0,0.751617097072463,0,0,0,0,0,0,0,0.520679215005393,0,2.61177619741208,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0.864542502924636,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87872795979168,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.428883182749851,0.260994291965212,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.839277046316667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12894031717091,2.38457178078183,3.46576998451015,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0.177404740325278,0,0,0,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447421727191169,0,0.121917924982269,0,0,0,0,0.701818390386317,0,0,0,0,0,0,0,9.40634592723046,0,1.64973582971138,0,0,0,0,0,0,0,1.07132363163395,4.2347384605883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61193297845189,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:113905899..113905917,- | |||
}} |
Revision as of 21:00, 10 September 2013
Short description: | p@chr12:113905899..113905917, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:113905899..113905917, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 7.42e-30 | 13 |
endo-epithelial cell | 1.67e-23 | 42 |
transitional epithelial cell | 5.83e-21 | 4 |
urothelial cell | 5.83e-21 | 4 |
epithelial cell | 1.17e-19 | 253 |
endodermal cell | 1.82e-18 | 58 |
bronchial epithelial cell | 1.34e-15 | 3 |
epithelial cell of tracheobronchial tree | 1.43e-13 | 9 |
epithelial cell of lower respiratory tract | 1.43e-13 | 9 |
squamous epithelial cell | 8.15e-09 | 63 |
epithelial cell of prostate | 1.03e-07 | 3 |
duct epithelial cell | 1.93e-07 | 3 |
branched duct epithelial cell | 1.93e-07 | 3 |
tracheal epithelial cell | 1.93e-07 | 3 |
tracheoblast | 1.93e-07 | 3 |
chorionic membrane mesenchymal stem cell | 3.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urothelium | 8.46e-17 | 5 |
lower respiratory tract epithelium | 1.34e-15 | 3 |
epithelium of bronchus | 1.34e-15 | 3 |
transitional epithelium | 5.10e-14 | 6 |
mucosa of oral region | 4.07e-12 | 4 |
respiratory system mucosa | 4.07e-12 | 4 |
respiratory tract | 5.71e-11 | 54 |
respiratory system | 2.58e-10 | 74 |
endoderm-derived structure | 4.13e-10 | 160 |
endoderm | 4.13e-10 | 160 |
presumptive endoderm | 4.13e-10 | 160 |
bronchus | 1.49e-09 | 5 |
tracheobronchial tree | 4.88e-08 | 15 |
lower respiratory tract | 4.88e-08 | 15 |
epithelial bud | 2.05e-07 | 37 |
egg chorion | 3.56e-07 | 3 |
epithelial fold | 5.26e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.30e-27 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.