FFCP PHASE1:Hg19::chr12:56350809..56350818,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C58|description=CAGE_peak_at_chr12:56350809..56350818,+|id=chr12:56350809..56350818,+|ontology_enrichment_celltype=CL:0000148!4.06e-54!10;CL:0000541!4.06e-54!10;CL:0000147!3.43e-50!14;CL:0000710!7.89e-27!20;CL:0000325!3.79e-22!39;CL:0000075!9.88e-20!27;CL:0002077!4.89e-16!33;CL:0002567!6.74e-16!3;CL:0002566!8.85e-13!1;CL:0000149!2.47e-12!4;CL:0000333!3.66e-12!41;CL:0000133!7.83e-11!59;CL:0000221!6.67e-09!71;CL:0002367!7.61e-07!2|ontology_enrichment_celltype_v019=CL:0000148;5.03e-82;10!CL:0000147;7.70e-59;14!CL:0000710;1.99e-41;20!CL:0002566;5.05e-34;1!CL:0000075;7.09e-31;27!CL:0002077;2.89e-22;34!CL:0002567;2.59e-12;3!CL:0000149;1.12e-09;4|ontology_enrichment_celltype_v019_2=CL:0000148,7.04e-82,10;CL:0000541,7.04e-82,10;CL:0000147,9.79e-59,14;CL:0000710,2.35e-41,20;CL:0002566,3.61e-34,1;CL:0000075,8.03e-31,27;CL:0002077,1.30e-24,34;CL:0000333,1.37e-19,41;CL:0000133,5.71e-14,59;CL:0002567,3.24e-12,3;CL:0000221,1.34e-11,72;CL:0000149,1.12e-09,4|ontology_enrichment_development_v019=CL:0000221;3.76e-07;72|ontology_enrichment_disease=DOID:1909!1.99e-23!2|ontology_enrichment_disease_v019=DOID:1909;9.07e-18;2|ontology_enrichment_disease_v019_2=DOID:1909,6.48e-18,2|ontology_enrichment_uberon=UBERON:0000966!8.13e-10!5;UBERON:0005388!8.13e-10!5;UBERON:0001802!8.13e-10!5;UBERON:0000970!4.39e-09!20;UBERON:0002104!1.16e-08!21;UBERON:0000020!6.36e-08!23;UBERON:0001032!1.34e-07!24;UBERON:0004456!1.34e-07!24;UBERON:0005969!7.61e-07!2;UBERON:0003956!7.61e-07!2|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8414389344729,0.381988425558278,1.17217447210047,0,1.23392991243988,6.00686115687835,1.71495859578347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,1.99825733481477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:56350809..56350818,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C58 | |||
|description=CAGE_peak_at_chr12:56350809..56350818,+ | |||
|id=chr12:56350809..56350818,+ | |||
|ontology_enrichment_celltype=CL:0000148!4.06e-54!10;CL:0000541!4.06e-54!10;CL:0000147!3.43e-50!14;CL:0000710!7.89e-27!20;CL:0000325!3.79e-22!39;CL:0000075!9.88e-20!27;CL:0002077!4.89e-16!33;CL:0002567!6.74e-16!3;CL:0002566!8.85e-13!1;CL:0000149!2.47e-12!4;CL:0000333!3.66e-12!41;CL:0000133!7.83e-11!59;CL:0000221!6.67e-09!71;CL:0002367!7.61e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000148;5.03e-82;10!CL:0000147;7.70e-59;14!CL:0000710;1.99e-41;20!CL:0002566;5.05e-34;1!CL:0000075;7.09e-31;27!CL:0002077;2.89e-22;34!CL:0002567;2.59e-12;3!CL:0000149;1.12e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,7.04e-82,10;CL:0000541,7.04e-82,10;CL:0000147,9.79e-59,14;CL:0000710,2.35e-41,20;CL:0002566,3.61e-34,1;CL:0000075,8.03e-31,27;CL:0002077,1.30e-24,34;CL:0000333,1.37e-19,41;CL:0000133,5.71e-14,59;CL:0002567,3.24e-12,3;CL:0000221,1.34e-11,72;CL:0000149,1.12e-09,4 | |||
|ontology_enrichment_development_v019=CL:0000221;3.76e-07;72 | |||
|ontology_enrichment_disease=DOID:1909!1.99e-23!2 | |||
|ontology_enrichment_disease_v019=DOID:1909;9.07e-18;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,6.48e-18,2 | |||
|ontology_enrichment_uberon=UBERON:0000966!8.13e-10!5;UBERON:0005388!8.13e-10!5;UBERON:0001802!8.13e-10!5;UBERON:0000970!4.39e-09!20;UBERON:0002104!1.16e-08!21;UBERON:0000020!6.36e-08!23;UBERON:0001032!1.34e-07!24;UBERON:0004456!1.34e-07!24;UBERON:0005969!7.61e-07!2;UBERON:0003956!7.61e-07!2 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0.446961094427288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8414389344729,0.381988425558278,1.17217447210047,0,1.23392991243988,6.00686115687835,1.71495859578347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769350375349168,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303298235083296,1.99825733481477,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:56350809..56350818,+ | |||
}} |
Revision as of 23:29, 10 September 2013
Short description: | p@chr12:56350809..56350818, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:56350809..56350818, + |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 7.04e-82 | 10 |
melanoblast | 7.04e-82 | 10 |
pigment cell | 9.79e-59 | 14 |
neurecto-epithelial cell | 2.35e-41 | 20 |
dark melanocyte | 3.61e-34 | 1 |
columnar/cuboidal epithelial cell | 8.03e-31 | 27 |
ecto-epithelial cell | 1.30e-24 | 34 |
migratory neural crest cell | 1.37e-19 | 41 |
neurectodermal cell | 5.71e-14 | 59 |
light melanocyte | 3.24e-12 | 3 |
ectodermal cell | 1.34e-11 | 72 |
visual pigment cell | 1.12e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
melanoma | 6.48e-18 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.