FFCP PHASE1:Hg19::chr12:66218003..66218018,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8091|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5009|TSSclassifier=S|UniProt=P52926|association_with_transcript=92bp_to_ENST00000403681_5end|description=CAGE_peak_9_at_HMGA2_5end|id=chr12:66218003..66218018,+|ontology_enrichment_celltype=CL:0000066!3.69e-25!254;CL:0002321!3.37e-18!248;CL:0000220!1.83e-17!246;CL:0000548!8.77e-16!679;CL:0000004!8.77e-16!679;CL:0000255!8.77e-16!679;CL:0000012!1.80e-15!682;CL:0000223!8.55e-14!59;CL:0002076!1.60e-12!43;CL:0002371!1.41e-10!591;CL:0000144!1.29e-09!625;CL:0000055!3.58e-08!180;CL:0000003!4.98e-08!722;CL:1000449!6.20e-08!16;CL:1000497!1.32e-07!18;CL:0002518!1.32e-07!18;CL:1000507!3.38e-07!12;CL:1000494!3.38e-07!12;CL:0000063!4.07e-07!578|ontology_enrichment_celltype_v019=CL:0002076;5.67e-11;42!CL:1000449;3.27e-09;15!CL:1000497;4.51e-09;17!CL:0002518;4.51e-09;17!CL:1000507;1.47e-08;10!CL:1000494;1.47e-08;10!CL:0002681;9.87e-07;12!CL:0002584;9.87e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,2.62e-27,253;CL:0000223,2.61e-15,58;CL:0002076,9.98e-14,42;CL:0002321,9.15e-13,250;CL:1000449,5.35e-09,15;CL:1000497,6.90e-09,17;CL:0002518,6.90e-09,17;CL:1000507,1.87e-08,10;CL:1000494,1.87e-08,10|ontology_enrichment_development_v019=CL:0000223;5.69e-08;58|ontology_enrichment_disease=DOID:0050687!7.00e-09!143;DOID:305!6.78e-07!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:0050687,2.76e-09,143;DOID:305,2.75e-07,106|ontology_enrichment_uberon=UBERON:0003104!8.27e-09!238;UBERON:0009142!8.27e-09!238;UBERON:0005256!1.73e-08!143;UBERON:0001444!2.13e-08!48;UBERON:0000466!3.59e-08!126;UBERON:0002100!5.10e-08!216;UBERON:0000468!5.18e-08!659;UBERON:0004211!6.20e-08!16;UBERON:0001285!6.20e-08!16;UBERON:0007684!6.20e-08!16;UBERON:0003220!6.20e-08!16;UBERON:0004208!6.20e-08!16;UBERON:0000481!7.15e-08!347;UBERON:0004119!2.93e-07!169;UBERON:0000925!2.93e-07!169;UBERON:0006595!2.93e-07!169;UBERON:0009773!3.38e-07!12;UBERON:0001231!3.38e-07!12;UBERON:0004810!3.38e-07!12;UBERON:0000922!3.60e-07!612;UBERON:0000467!4.71e-07!625;UBERON:0006555!4.92e-07!17;UBERON:0005103!4.92e-07!17;UBERON:0000083!4.92e-07!17;UBERON:0009201!4.92e-07!17;UBERON:0004819!4.92e-07!17;UBERON:0006553!4.92e-07!17;UBERON:0003074!4.92e-07!17;UBERON:0003060!4.92e-07!17;UBERON:0000464!5.18e-07!104;UBERON:0000480!6.58e-07!626;UBERON:0003914!7.21e-07!118;UBERON:0000353!8.89e-07!17|ontology_enrichment_uberon_v019=UBERON:0006554;1.48e-10;30!UBERON:0001008;1.48e-10;30!UBERON:0006555;3.27e-09;15!UBERON:0004819;3.27e-09;15!UBERON:0001285;3.27e-09;15!UBERON:0007684;3.27e-09;15!UBERON:0004211;1.47e-08;10!UBERON:0009773;1.47e-08;10!UBERON:0001231;1.47e-08;10!UBERON:0004810;1.47e-08;10!UBERON:0002113;6.43e-08;24!UBERON:0011143;6.43e-08;24!UBERON:0000019;5.67e-07;19!UBERON:0000047;5.67e-07;19!UBERON:0004088;5.67e-07;19!UBERON:0010230;5.67e-07;19!UBERON:0000353;9.26e-07;15!UBERON:0001225;9.87e-07;12!UBERON:0008987;9.87e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.09e-09,101;UBERON:0004211,5.35e-09,15;UBERON:0009773,5.35e-09,15;UBERON:0001231,5.35e-09,15;UBERON:0001285,5.35e-09,15;UBERON:0007684,5.35e-09,15;UBERON:0004208,5.35e-09,15;UBERON:0004810,1.87e-08,10;UBERON:0006555,3.85e-08,16;UBERON:0004819,3.85e-08,16;UBERON:0001444,1.90e-07,49;UBERON:0000033,3.32e-07,56;UBERON:0006554,9.01e-07,47|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.491467873003018,0.697801167972428,2.62129646556207,1.05506791291381,0.37129905888014,0.662794751455832,0,0.602694528023977,0.730310090387373,2.43966399395253,0.492484232307152,0.612002073732759,0,0.572471974262113,0.547497700291537,0.502170558379211,1.60468152070698,1.80621296789881,1.57421562627358,0,0,0,2.75826367343678,3.91567694411725,5.17655614233503,0,0,1.17440175733939,1.10799081706375,2.4065333696417,0.217010870715852,0,0,0,0.145398238779565,0,0,0.929716147622738,1.23350366406548,0.619412741790207,0,0,0.236482229888585,2.06847408441971,1.29096936716765,0,0.376484679085209,0,0.224723484445085,0,0.641858054152187,0,0,0,0,0.290209238628584,1.70215567407342,0,0.251248665256743,0,0.217188844705117,1.81619850790011,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,1.5905718941022,0.486634870302636,3.49778823507051,1.99556457716308,1.84453049955565,4.71524671791765,3.64295288292542,0.370784442784429,0,0,0,0.238490624305342,0,0,0.39752481473341,0,0,0.56530794192401,0.419499436209906,0.275118041940067,1.25396979922086,2.06733407335463,1.42306505074684,1.67360306382335,0,2.28081631715554,0,3.30896772311282,4.86085168729056,1.96459402224975,1.12264686313085,4.50445921933289,3.06633274931766,2.84779697870439,1.83201743930407,0,0,2.18047026071267,0,0.506522046658319,0.397227542439656,1.14734648299525,1.06400514659507,1.12135520028461,0,0.24666754841716,0.933633106199299,0.942974704487816,0.817309515567294,1.21085942115945,1.72852777344,0.70296429550139,0.93648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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |||
|TSSclassifier=S | |||
|UniProt=P52926 | |||
|association_with_transcript=92bp_to_ENST00000403681_5end | |||
|description=CAGE_peak_9_at_HMGA2_5end | |||
|id=chr12:66218003..66218018,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.69e-25!254;CL:0002321!3.37e-18!248;CL:0000220!1.83e-17!246;CL:0000548!8.77e-16!679;CL:0000004!8.77e-16!679;CL:0000255!8.77e-16!679;CL:0000012!1.80e-15!682;CL:0000223!8.55e-14!59;CL:0002076!1.60e-12!43;CL:0002371!1.41e-10!591;CL:0000144!1.29e-09!625;CL:0000055!3.58e-08!180;CL:0000003!4.98e-08!722;CL:1000449!6.20e-08!16;CL:1000497!1.32e-07!18;CL:0002518!1.32e-07!18;CL:1000507!3.38e-07!12;CL:1000494!3.38e-07!12;CL:0000063!4.07e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.67e-11;42!CL:1000449;3.27e-09;15!CL:1000497;4.51e-09;17!CL:0002518;4.51e-09;17!CL:1000507;1.47e-08;10!CL:1000494;1.47e-08;10!CL:0002681;9.87e-07;12!CL:0002584;9.87e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.62e-27,253;CL:0000223,2.61e-15,58;CL:0002076,9.98e-14,42;CL:0002321,9.15e-13,250;CL:1000449,5.35e-09,15;CL:1000497,6.90e-09,17;CL:0002518,6.90e-09,17;CL:1000507,1.87e-08,10;CL:1000494,1.87e-08,10 | |||
|ontology_enrichment_development_v019=CL:0000223;5.69e-08;58 | |||
|ontology_enrichment_disease=DOID:0050687!7.00e-09!143;DOID:305!6.78e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,2.76e-09,143;DOID:305,2.75e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0003104!8.27e-09!238;UBERON:0009142!8.27e-09!238;UBERON:0005256!1.73e-08!143;UBERON:0001444!2.13e-08!48;UBERON:0000466!3.59e-08!126;UBERON:0002100!5.10e-08!216;UBERON:0000468!5.18e-08!659;UBERON:0004211!6.20e-08!16;UBERON:0001285!6.20e-08!16;UBERON:0007684!6.20e-08!16;UBERON:0003220!6.20e-08!16;UBERON:0004208!6.20e-08!16;UBERON:0000481!7.15e-08!347;UBERON:0004119!2.93e-07!169;UBERON:0000925!2.93e-07!169;UBERON:0006595!2.93e-07!169;UBERON:0009773!3.38e-07!12;UBERON:0001231!3.38e-07!12;UBERON:0004810!3.38e-07!12;UBERON:0000922!3.60e-07!612;UBERON:0000467!4.71e-07!625;UBERON:0006555!4.92e-07!17;UBERON:0005103!4.92e-07!17;UBERON:0000083!4.92e-07!17;UBERON:0009201!4.92e-07!17;UBERON:0004819!4.92e-07!17;UBERON:0006553!4.92e-07!17;UBERON:0003074!4.92e-07!17;UBERON:0003060!4.92e-07!17;UBERON:0000464!5.18e-07!104;UBERON:0000480!6.58e-07!626;UBERON:0003914!7.21e-07!118;UBERON:0000353!8.89e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.48e-10;30!UBERON:0001008;1.48e-10;30!UBERON:0006555;3.27e-09;15!UBERON:0004819;3.27e-09;15!UBERON:0001285;3.27e-09;15!UBERON:0007684;3.27e-09;15!UBERON:0004211;1.47e-08;10!UBERON:0009773;1.47e-08;10!UBERON:0001231;1.47e-08;10!UBERON:0004810;1.47e-08;10!UBERON:0002113;6.43e-08;24!UBERON:0011143;6.43e-08;24!UBERON:0000019;5.67e-07;19!UBERON:0000047;5.67e-07;19!UBERON:0004088;5.67e-07;19!UBERON:0010230;5.67e-07;19!UBERON:0000353;9.26e-07;15!UBERON:0001225;9.87e-07;12!UBERON:0008987;9.87e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,1.09e-09,101;UBERON:0004211,5.35e-09,15;UBERON:0009773,5.35e-09,15;UBERON:0001231,5.35e-09,15;UBERON:0001285,5.35e-09,15;UBERON:0007684,5.35e-09,15;UBERON:0004208,5.35e-09,15;UBERON:0004810,1.87e-08,10;UBERON:0006555,3.85e-08,16;UBERON:0004819,3.85e-08,16;UBERON:0001444,1.90e-07,49;UBERON:0000033,3.32e-07,56;UBERON:0006554,9.01e-07,47 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.491467873003018,0.697801167972428,2.62129646556207,1.05506791291381,0.37129905888014,0.662794751455832,0,0.602694528023977,0.730310090387373,2.43966399395253,0.492484232307152,0.612002073732759,0,0.572471974262113,0.547497700291537,0.502170558379211,1.60468152070698,1.80621296789881,1.57421562627358,0,0,0,2.75826367343678,3.91567694411725,5.17655614233503,0,0,1.17440175733939,1.10799081706375,2.4065333696417,0.217010870715852,0,0,0,0.145398238779565,0,0,0.929716147622738,1.23350366406548,0.619412741790207,0,0,0.236482229888585,2.06847408441971,1.29096936716765,0,0.376484679085209,0,0.224723484445085,0,0.641858054152187,0,0,0,0,0.290209238628584,1.70215567407342,0,0.251248665256743,0,0.217188844705117,1.81619850790011,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,1.5905718941022,0.486634870302636,3.49778823507051,1.99556457716308,1.84453049955565,4.71524671791765,3.64295288292542,0.370784442784429,0,0,0,0.238490624305342,0,0,0.39752481473341,0,0,0.56530794192401,0.419499436209906,0.275118041940067,1.25396979922086,2.06733407335463,1.42306505074684,1.67360306382335,0,2.28081631715554,0,3.30896772311282,4.86085168729056,1.96459402224975,1.12264686313085,4.50445921933289,3.06633274931766,2.84779697870439,1.83201743930407,0,0,2.18047026071267,0,0.506522046658319,0.397227542439656,1.14734648299525,1.06400514659507,1.12135520028461,0,0.24666754841716,0.933633106199299,0.942974704487816,0.817309515567294,1.21085942115945,1.72852777344,0.70296429550139,0.936480230490962,1.1409436430889,0.448346041655403,2.46612447151906,2.91371299862637,3.51127016755621,2.44985005505872,3.19369225010597,0.826606249406124,1.18800285728205,0.741800787835671,0.910161361938026,1.43723628363248,3.87173062094352,5.38009635449446,1.6623846929051,0.877955241761676,0.612975591598039,1.50238058906597,0.340296549480063,0.358779271377724,0.213557388818567,0.423863802319124,2.70081986475962,0.515262646192195,0.772921620136887,0.37223371266318,1.35021065793013,0,0.504867548488229,0.552299391853796,0.161646056818812,1.06502877754984,0.302256294682921,0.67824236924195,5.60456474173561,9.81886034127005,3.44165514466805,3.04934265323988,5.03613119621644,5.11253348625881,3.10983165046111,4.28945446488568,3.28479623168247,0,0,4.14404764057442,0,0,0,0,0,0,0,0,0,0,0,3.69077727312324,1.40241773803446,0.8231480226628,0,0,0,0,0.882926198829301,3.32068784066407,2.23038153388083,2.96325770603289,4.49607013030478,3.31745608958382,10.7402596383894,1.3032332212413,3.11980435583874,1.44331342025273,3.014190529352,0.70445216541493,1.01056513432752,0,0.380508304469197,0,0,0,0,0,1.87467667973554,4.03157107677263,1.84307626415102,1.07470227243418,2.90633938513962,0.766765358330422,0,0,0,0,0,0,0,0,1.71072446022705,0.308482478109971,0.300343057843917,0,5.27016096423195,0.87192013766656,5.79372457985505,2.58543431515556,0,0.845302752556,0,0,2.05765899409714,4.25547396069835,1.3321108950805,0.285955987316295,0.542621605391443,0.823240336780769,1.62868092146868,0,2.37585561880029,0.301439377059586,0,0.099972991182057,0,0,0,0.479249710983165,0,2.85273810081437,0.723906533337896,2.4657158706046,1.25342674267927,0,0,0,0,0.76228387266739,0,0,0,0.637938751653163,0,0,0,0.858840442033979,2.00068208423871,0.542530047399471,0.415941723061614,0,0,0.468565659970853,0.300946099727719,0,2.0694614258501,0.664225598535437,0.553107505625109,1.73767228936166,5.67823356641948,3.0882908142977,0.206768026122887,0,0,0.303127571446259,1.66435439510497,0.907170879989041,0.496215615637554,0,0,0,0,0.160853921143607,0,3.08419387605311,0.710246901252508,1.06765302817952,2.59627214591811,1.27831416305955,3.98836183652353,1.20303882181971,1.93370076765382,0,0.910455840033585,0.131124414959424,13.5359883872224,22.4114630973847,9.41219723012226,7.30696123266303,12.3495405804665,1.13733384070897,2.55140557914773,2.15915916102139,4.62681758070868,2.70946437543853,1.00337954770971,4.84264918785573,2.49322802678617,6.04461837749881,1.31555925987561,0.261435451024901,3.07740150139667,2.95213181129735,2.27764876265012,0,0.457847324091717,0.577566499444116,6.89118645595407,2.60024098414608,0,0.96670718292122,1.23238893691716,0.614014698904518,2.34322173223702,0.859361958946189,0.870100163485371,2.04543905798642,0.178064071293475,2.64455864577565,1.34533047155574,12.2508203994801,0.809262246844399,0.464845549297286,1.5740617341532,1.3940745403212,0.616067160352178,1.59691809095107,0.869932992075073,0.18532421910392,0,1.116475108079,0.632758849437452,0.190630193923825,1.535386747868,1.28381696410176,0.636406495851874,0,0.539617372749944,0.54907405947211,1.53156123049392,0.404364963146632,1.58510321173008,0.842516912477962,0,0.731140468893853,0,0.409499734223957,0,0,0.551365343546124,0.66343897524122,0.876901770507525,0,4.59126326432643,2.43492452355245,2.78841148289775,1.69017361519345,6.31009949697827,1.76848273823618,1.070013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| |||
|short_description=p9@HMGA2 | |||
}} |
Revision as of 23:59, 10 September 2013
Short description: | p9@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_HMGA2_5end |
Coexpression cluster: | NA |
Association with transcript: | 92bp_to_ENST00000403681_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | P52926 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.62e-27 | 253 |
endodermal cell | 2.61e-15 | 58 |
endo-epithelial cell | 9.98e-14 | 42 |
embryonic cell | 9.15e-13 | 250 |
epithelial cell of nephron | 5.35e-09 | 15 |
kidney cell | 6.90e-09 | 17 |
kidney epithelial cell | 6.90e-09 | 17 |
kidney tubule cell | 1.87e-08 | 10 |
nephron tubule epithelial cell | 1.87e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
trunk region element | 1.09e-09 | 101 |
nephron epithelium | 5.35e-09 | 15 |
renal tubule | 5.35e-09 | 15 |
nephron tubule | 5.35e-09 | 15 |
nephron | 5.35e-09 | 15 |
uriniferous tubule | 5.35e-09 | 15 |
nephrogenic mesenchyme | 5.35e-09 | 15 |
nephron tubule epithelium | 1.87e-08 | 10 |
excretory tube | 3.85e-08 | 16 |
kidney epithelium | 3.85e-08 | 16 |
subdivision of head | 1.90e-07 | 49 |
head | 3.32e-07 | 56 |
urinary system structure | 9.01e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 2.76e-09 | 143 |
carcinoma | 2.75e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.