FFCP PHASE1:Hg19::chr19:41104392..41104421,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=S|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr19:41104392..41104421,+|id=chr19:41104392..41104421,+|ontology_enrichment_celltype=CL:0002319!5.36e-10!25;CL:0000055!6.32e-09!180;CL:0000133!1.20e-08!59;CL:0000095!1.15e-07!17;CL:0000123!1.15e-07!17;CL:0000393!5.02e-07!60;CL:0000211!5.02e-07!60|ontology_enrichment_celltype_v019=CL:0002319;1.92e-10;25!CL:0000128;1.26e-08;7!CL:0000126;1.26e-08;7!CL:0000127;1.26e-08;7!CL:0000095;1.93e-08;17!CL:0002322;3.73e-07;5!CL:0002321;6.70e-07;15|ontology_enrichment_celltype_v019_2=CL:0000133,2.95e-11,59;CL:0002319,1.96e-10,25;CL:0000333,2.20e-09,41;CL:0000128,2.15e-08,7;CL:0000126,2.15e-08,7;CL:0000127,2.15e-08,7;CL:0002453,2.15e-08,7;CL:0000095,2.31e-08,17;CL:0000123,2.31e-08,17;CL:0000221,6.51e-08,72;CL:0002322,2.47e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;8.56e-10;10!DOID:3095;9.66e-08;22!DOID:2994;9.66e-08;22|ontology_enrichment_disease_v019_2=DOID:171,9.77e-10,10;DOID:3095,1.03e-07,22;DOID:2994,1.03e-07,22|ontology_enrichment_uberon=UBERON:0000481!9.03e-10!347;UBERON:0000922!9.16e-09!612;UBERON:0000468!3.18e-07!659;UBERON:0000970!6.16e-07!20;UBERON:0001801!7.17e-07!14;UBERON:0000019!7.44e-07!19;UBERON:0000047!7.44e-07!19;UBERON:0004088!7.44e-07!19;UBERON:0003072!7.44e-07!19;UBERON:0003071!7.44e-07!19;UBERON:0004128!7.44e-07!19;UBERON:0002050!7.58e-07!605;UBERON:0005423!7.58e-07!605;UBERON:0001456!9.45e-07!21|ontology_enrichment_uberon_v019=UBERON:0000922;2.05e-11;49!UBERON:0001456;1.94e-08;21!UBERON:0002050;2.37e-08;5!UBERON:0005423;2.37e-08;5!UBERON:0001801;4.08e-08;14!UBERON:0000019;4.23e-08;19!UBERON:0000047;4.23e-08;19!UBERON:0004088;4.23e-08;19!UBERON:0010230;4.23e-08;19!UBERON:0000970;1.51e-07;20!UBERON:0002104;4.74e-07;21!UBERON:0002346;7.40e-07;4!UBERON:0000923;7.40e-07;4!UBERON:0010316;7.40e-07;4!UBERON:0005291;7.40e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001801,3.63e-08,14;UBERON:0001456,7.01e-08,22;UBERON:0000019,1.45e-07,20;UBERON:0000047,1.45e-07,20;UBERON:0010312,1.45e-07,20;UBERON:0004088,1.45e-07,20;UBERON:0010230,1.45e-07,20;UBERON:0003072,1.45e-07,20;UBERON:0004128,1.45e-07,20;UBERON:0003071,1.45e-07,20;UBERON:0000970,4.56e-07,21;UBERON:0002104,4.56e-07,21|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,0,0,0,2.35156070624089,0.331397375727916,0.672325146451775,0,1.46062018077475,0.487932798790507,1.72369481307503,2.04000691244253,4.07491137921514,1.43117993565528,1.23186982565596,2.51085279189606,0,0,0,0,0,0,0,0,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0.144846518960824,0,0,2.3633704291017,1.55210578223795,2.54720878510066,1.24430121722827,0.364295288292542,0,0,0,0,0,0,0,0.39752481473341,0,0,0,2.09749718104953,1.92582629358047,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0.17859945656816,0.22452937262617,0,1.53316637465883,0.949265659568129,0,0,0,0,0,0.12663051166458,0,0.573673241497627,0.354668382198357,0,1.06748995729705,0,0.311211035399766,0,0,1.81628913173918,0.576175924479999,2.34321431833797,0,0.570471821544449,0,0.352303495931295,0,0,0,0.859840221182376,0.516628905878827,1.18800285728205,0,0,0.718618141816238,0.841680569770331,0.250237039743928,0,0,0,0.150238058906597,0,0.358779271377724,0.213557388818567,0,0.300091096084402,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0.757301322732344,0.184099797284599,2.42469085228218,0,0,0.169560592310488,0,0.272746120590835,0,2.92736894711029,2.12047629314376,2.78865462886844,3.73179798055334,1.51392510525377,5.47466038613745,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.925884451585296,1.62904152655162,1.03993478527958,1.44331342025273,3.36198174427723,0.469634776943287,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.2933531432838,0.258543431515556,0,0,0,0,0,0,0.799266537048298,0.714889968290738,1.08524321078289,1.64648067356154,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,1.27047312111232,0,1.54657762555539,1.00509759200609,1.91381625495949,0,0,0,4.66227668532732,3.50119364741774,2.17012018959788,0,0.178428988797162,0,0,0.300946099727719,0,2.0694614258501,0,0.368738337083406,1.39013783148933,6.2656370388077,2.74514739048685,0,0,0,0,0,0.907170879989041,0,0,0,0,0,0,0,0,0.355123450626254,0,0,0,0,0,0,0.114814448164607,0.364182336013434,0.393373244878272,0.902399225814824,0.15403067420883,2.35304930753057,0,0.527758144464379,0,0,0,0,0.270946437543853,1.50506932156456,0,0,0.447749509444357,0,0,0,1.31205858279882,0,0,0,0.082509499920588,0,0,0,3.0934629853479,0.3080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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=S | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:41104392..41104421,+ | |||
|id=chr19:41104392..41104421,+ | |||
|ontology_enrichment_celltype=CL:0002319!5.36e-10!25;CL:0000055!6.32e-09!180;CL:0000133!1.20e-08!59;CL:0000095!1.15e-07!17;CL:0000123!1.15e-07!17;CL:0000393!5.02e-07!60;CL:0000211!5.02e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.92e-10;25!CL:0000128;1.26e-08;7!CL:0000126;1.26e-08;7!CL:0000127;1.26e-08;7!CL:0000095;1.93e-08;17!CL:0002322;3.73e-07;5!CL:0002321;6.70e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,2.95e-11,59;CL:0002319,1.96e-10,25;CL:0000333,2.20e-09,41;CL:0000128,2.15e-08,7;CL:0000126,2.15e-08,7;CL:0000127,2.15e-08,7;CL:0002453,2.15e-08,7;CL:0000095,2.31e-08,17;CL:0000123,2.31e-08,17;CL:0000221,6.51e-08,72;CL:0002322,2.47e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;8.56e-10;10!DOID:3095;9.66e-08;22!DOID:2994;9.66e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,9.77e-10,10;DOID:3095,1.03e-07,22;DOID:2994,1.03e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000481!9.03e-10!347;UBERON:0000922!9.16e-09!612;UBERON:0000468!3.18e-07!659;UBERON:0000970!6.16e-07!20;UBERON:0001801!7.17e-07!14;UBERON:0000019!7.44e-07!19;UBERON:0000047!7.44e-07!19;UBERON:0004088!7.44e-07!19;UBERON:0003072!7.44e-07!19;UBERON:0003071!7.44e-07!19;UBERON:0004128!7.44e-07!19;UBERON:0002050!7.58e-07!605;UBERON:0005423!7.58e-07!605;UBERON:0001456!9.45e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;2.05e-11;49!UBERON:0001456;1.94e-08;21!UBERON:0002050;2.37e-08;5!UBERON:0005423;2.37e-08;5!UBERON:0001801;4.08e-08;14!UBERON:0000019;4.23e-08;19!UBERON:0000047;4.23e-08;19!UBERON:0004088;4.23e-08;19!UBERON:0010230;4.23e-08;19!UBERON:0000970;1.51e-07;20!UBERON:0002104;4.74e-07;21!UBERON:0002346;7.40e-07;4!UBERON:0000923;7.40e-07;4!UBERON:0010316;7.40e-07;4!UBERON:0005291;7.40e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001801,3.63e-08,14;UBERON:0001456,7.01e-08,22;UBERON:0000019,1.45e-07,20;UBERON:0000047,1.45e-07,20;UBERON:0010312,1.45e-07,20;UBERON:0004088,1.45e-07,20;UBERON:0010230,1.45e-07,20;UBERON:0003072,1.45e-07,20;UBERON:0004128,1.45e-07,20;UBERON:0003071,1.45e-07,20;UBERON:0000970,4.56e-07,21;UBERON:0002104,4.56e-07,21 | |||
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| |||
|short_description=p@chr19:41104392..41104421,+ | |||
}} |
Revision as of 20:42, 11 September 2013
Short description: | p@chr19:41104392..41104421, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:41104392..41104421, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 2.95e-11 | 59 |
neural cell | 1.96e-10 | 25 |
migratory neural crest cell | 2.20e-09 | 41 |
oligodendrocyte | 2.15e-08 | 7 |
macroglial cell | 2.15e-08 | 7 |
astrocyte | 2.15e-08 | 7 |
oligodendrocyte precursor cell | 2.15e-08 | 7 |
neuron associated cell | 2.31e-08 | 17 |
neuron associated cell (sensu Vertebrata) | 2.31e-08 | 17 |
ectodermal cell | 6.51e-08 | 72 |
embryonic stem cell | 2.47e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
anterior segment of eyeball | 3.63e-08 | 14 |
face | 7.01e-08 | 22 |
camera-type eye | 1.45e-07 | 20 |
simple eye | 1.45e-07 | 20 |
immature eye | 1.45e-07 | 20 |
ocular region | 1.45e-07 | 20 |
eyeball of camera-type eye | 1.45e-07 | 20 |
optic cup | 1.45e-07 | 20 |
optic vesicle | 1.45e-07 | 20 |
eye primordium | 1.45e-07 | 20 |
eye | 4.56e-07 | 21 |
visual system | 4.56e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 9.77e-10 | 10 |
germ cell and embryonal cancer | 1.03e-07 | 22 |
germ cell cancer | 1.03e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.