FFCP PHASE1:Hg19::chr1:117753498..117753504,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=79679|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28873|TSSclassifier=S|UniProt=Q7Z7D3|association_with_transcript=44bp_to_ENST00000328189,ENST00000463461,uc001ehb.2,uc001ehc.2,uc009whf.1_5end|description=CAGE_peak_2_at_VTCN1_5end|id=chr1:117753498..117753504,-|ontology_enrichment_celltype=CL:0000349!1.10e-10!3;CL:0002577!1.10e-10!3;CL:0000066!7.48e-10!254;CL:0002536!9.26e-08!2;CL:1000415!9.87e-08!2;CL:0000159!2.80e-07!2|ontology_enrichment_celltype_v019=CL:0002536;2.01e-31;2!CL:1000415;4.04e-31;2!CL:0000349;7.40e-29;19!CL:0002577;1.16e-21;3!CL:0002537;2.77e-13;5|ontology_enrichment_celltype_v019_2=CL:0002536,3.46e-31,2;CL:1000415,4.71e-31,2;CL:0000349,8.99e-29,19;CL:0002577,1.17e-21,3;CL:0002537,2.85e-13,5|ontology_enrichment_development_v019=UBERON:0007297;6.67e-09;2|ontology_enrichment_disease_v019=DOID:4468;3.43e-09;2|ontology_enrichment_disease_v019_2=DOID:4468,3.43e-09,2|ontology_enrichment_uberon=UBERON:0005631!1.26e-25!14;UBERON:0000158!1.26e-25!14;UBERON:0003124!9.73e-16!7;UBERON:0000478!7.18e-14!24;UBERON:0001987!3.58e-13!4;UBERON:0004340!3.58e-13!4;UBERON:0000305!1.04e-11!7;UBERON:0004871!3.43e-10!8;UBERON:0004175!1.28e-08!25;UBERON:0004923!1.44e-08!57;UBERON:0000995!2.76e-08!21;UBERON:0005156!6.61e-08!59;UBERON:0000990!6.61e-08!59;UBERON:0005795!7.61e-08!22;UBERON:0003975!7.61e-08!22;UBERON:0003133!8.13e-08!48;UBERON:0003127!1.36e-07!2;UBERON:0002294!2.67e-07!7;UBERON:0001173!2.67e-07!7;UBERON:0004912!2.67e-07!7|ontology_enrichment_uberon_v019=UBERON:0000305;3.35e-35;7!UBERON:0005631;8.69e-25;10!UBERON:0000158;8.69e-25;10!UBERON:0000478;7.90e-23;24!UBERON:0002110;4.02e-21;3!UBERON:0001987;1.65e-16;4!UBERON:0001301;1.78e-16;1!UBERON:0002294;1.29e-09;7!UBERON:0001173;1.29e-09;7!UBERON:0003127;6.67e-09;2!UBERON:0006562;6.67e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.67e-39,14;UBERON:0000158,4.67e-39,14;UBERON:0000305,4.77e-35,7;UBERON:0004871,9.88e-31,8;UBERON:0000478,9.22e-23,24;UBERON:0002110,4.46e-21,3;UBERON:0006242,4.46e-21,3;UBERON:0001301,1.04e-16,1;UBERON:0001987,1.66e-16,4;UBERON:0004340,1.66e-16,4;UBERON:0003124,7.64e-10,7;UBERON:0003127,5.49e-09,2;UBERON:0004923,3.86e-08,66;UBERON:0002294,1.17e-07,9;UBERON:0001173,1.17e-07,9;UBERON:0004912,1.17e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.09220686065086,2.63766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,4.99306318531491,3.32629322662648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924184045252977,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,5.64232893582013,1.22864280839693,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0.179515288819544,0.434589487688032,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,9.95720129770801,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0,1.7472666824203,0,0,0,0,0,0,0,0,0,0,1.36885967914362,1.12222348352147,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0.261906694481422,0,0,0,0,0,0,0,0,0,0,1.53314913167514,0,0,0,0,0.177404740325278,0,0,0,0,0,0.111231401892069,0.078493092850514,0,1.12108865325516,0,0.215927591218621,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0.4582137370881,0,0,0.559277158988962,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.430333232356058,1.66330178273007,0.0814032686109745,0,0,0,0,0.366724332548599,0,0,0,0|short_description=p2@VTCN1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=79679 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28873 | |||
|TSSclassifier=S | |||
|UniProt=Q7Z7D3 | |||
|association_with_transcript=44bp_to_ENST00000328189,ENST00000463461,uc001ehb.2,uc001ehc.2,uc009whf.1_5end | |||
|description=CAGE_peak_2_at_VTCN1_5end | |||
|id=chr1:117753498..117753504,- | |||
|ontology_enrichment_celltype=CL:0000349!1.10e-10!3;CL:0002577!1.10e-10!3;CL:0000066!7.48e-10!254;CL:0002536!9.26e-08!2;CL:1000415!9.87e-08!2;CL:0000159!2.80e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002536;2.01e-31;2!CL:1000415;4.04e-31;2!CL:0000349;7.40e-29;19!CL:0002577;1.16e-21;3!CL:0002537;2.77e-13;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002536,3.46e-31,2;CL:1000415,4.71e-31,2;CL:0000349,8.99e-29,19;CL:0002577,1.17e-21,3;CL:0002537,2.85e-13,5 | |||
|ontology_enrichment_development_v019=UBERON:0007297;6.67e-09;2 | |||
|ontology_enrichment_disease_v019=DOID:4468;3.43e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4468,3.43e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.26e-25!14;UBERON:0000158!1.26e-25!14;UBERON:0003124!9.73e-16!7;UBERON:0000478!7.18e-14!24;UBERON:0001987!3.58e-13!4;UBERON:0004340!3.58e-13!4;UBERON:0000305!1.04e-11!7;UBERON:0004871!3.43e-10!8;UBERON:0004175!1.28e-08!25;UBERON:0004923!1.44e-08!57;UBERON:0000995!2.76e-08!21;UBERON:0005156!6.61e-08!59;UBERON:0000990!6.61e-08!59;UBERON:0005795!7.61e-08!22;UBERON:0003975!7.61e-08!22;UBERON:0003133!8.13e-08!48;UBERON:0003127!1.36e-07!2;UBERON:0002294!2.67e-07!7;UBERON:0001173!2.67e-07!7;UBERON:0004912!2.67e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;3.35e-35;7!UBERON:0005631;8.69e-25;10!UBERON:0000158;8.69e-25;10!UBERON:0000478;7.90e-23;24!UBERON:0002110;4.02e-21;3!UBERON:0001987;1.65e-16;4!UBERON:0001301;1.78e-16;1!UBERON:0002294;1.29e-09;7!UBERON:0001173;1.29e-09;7!UBERON:0003127;6.67e-09;2!UBERON:0006562;6.67e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.67e-39,14;UBERON:0000158,4.67e-39,14;UBERON:0000305,4.77e-35,7;UBERON:0004871,9.88e-31,8;UBERON:0000478,9.22e-23,24;UBERON:0002110,4.46e-21,3;UBERON:0006242,4.46e-21,3;UBERON:0001301,1.04e-16,1;UBERON:0001987,1.66e-16,4;UBERON:0004340,1.66e-16,4;UBERON:0003124,7.64e-10,7;UBERON:0003127,5.49e-09,2;UBERON:0004923,3.86e-08,66;UBERON:0002294,1.17e-07,9;UBERON:0001173,1.17e-07,9;UBERON:0004912,1.17e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.09220686065086,2.63766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,4.99306318531491,3.32629322662648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924184045252977,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,5.64232893582013,1.22864280839693,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0.179736702294654,0.179021174675609,0,0,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0.179515288819544,0.434589487688032,0.31900115973192,0.183195186803725,0,0,0,0,0,0,0,0,0,0,9.95720129770801,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520679215005393,0,0,1.7472666824203,0,0,0,0,0,0,0,0,0,0,1.36885967914362,1.12222348352147,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.235939446695481,0,0,0,0,0,0.0752103283492573,0,0.781514011233092,0.261906694481422,0,0,0,0,0,0,0,0,0,0,1.53314913167514,0,0,0,0,0.177404740325278,0,0,0,0,0,0.111231401892069,0.078493092850514,0,1.12108865325516,0,0.215927591218621,0,0,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0.4582137370881,0,0,0.559277158988962,0.294450700845729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0.151557396436479,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.430333232356058,1.66330178273007,0.0814032686109745,0,0,0,0,0.366724332548599,0,0,0,0 | |||
|short_description=p2@VTCN1 | |||
}} |
Revision as of 23:45, 11 September 2013
Short description: | p2@VTCN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_VTCN1_5end |
Coexpression cluster: | NA |
Association with transcript: | 44bp_to_ENST00000328189, ENST00000463461, uc001ehb.2, uc001ehc.2, uc009whf.1_5end |
EntrezGene: | VTCN1 |
HGNC: | 28873 |
UniProt: | Q7Z7D3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amniotic epithelial cell | 3.46e-31 | 2 |
epithelial cell of gall bladder | 4.71e-31 | 2 |
extraembryonic cell | 8.99e-29 | 19 |
placental epithelial cell | 1.17e-21 | 3 |
amnion mesenchymal stem cell | 2.85e-13 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 4.67e-39 | 14 |
membranous layer | 4.67e-39 | 14 |
amnion | 4.77e-35 | 7 |
somatic layer of lateral plate mesoderm | 9.88e-31 | 8 |
extraembryonic structure | 9.22e-23 | 24 |
gallbladder | 4.46e-21 | 3 |
gall bladder primordium | 4.46e-21 | 3 |
epididymis | 1.04e-16 | 1 |
placenta | 1.66e-16 | 4 |
allantois | 1.66e-16 | 4 |
chorion | 7.64e-10 | 7 |
open tracheal system trachea | 5.49e-09 | 2 |
organ component layer | 3.86e-08 | 66 |
biliary system | 1.17e-07 | 9 |
biliary tree | 1.17e-07 | 9 |
biliary bud | 1.17e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
clear cell adenocarcinoma | 3.43e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.