FFCP PHASE1:Hg19::chr1:246151834..246151867,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64754|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15513|TSSclassifier=N|UniProt=|association_with_transcript=0bp_to_ENST00000488153,ENST00000493441_5end|coexpression_cluster_id=C93|description=CAGE_peak_4_at_SMYD3_5end|id=chr1:246151834..246151867,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002504;8.17e-21;3!CL:1000279;8.17e-21;3!CL:1000280;8.17e-21;3!CL:0002563;8.38e-08;4|ontology_enrichment_celltype_v019_2=CL:0002504,5.41e-21,3;CL:1000279,5.41e-21,3;CL:1000280,5.41e-21,3;CL:0002563,8.53e-08,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1036!5.58e-11!8;DOID:162!2.80e-09!235;DOID:14566!8.96e-09!239|ontology_enrichment_disease_v019=DOID:1036;1.25e-22;8!DOID:8692;9.95e-08;31|ontology_enrichment_disease_v019_2=DOID:1036,1.28e-22,8;DOID:162,6.42e-08,235;DOID:8692,6.56e-08,31;DOID:14566,1.13e-07,239|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0001155;2.59e-12;9!UBERON:0000059;4.19e-10;11!UBERON:0000160;2.78e-09;17!UBERON:0001301;1.31e-08;1!UBERON:0001242;8.38e-08;4!UBERON:0001262;8.38e-08;4!UBERON:0004786;8.38e-08;4!UBERON:0004808;8.38e-08;4!UBERON:0001277;8.38e-08;4!UBERON:0005409;3.21e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0001155,2.14e-12,9;UBERON:0000059,3.59e-10,11;UBERON:0000160,2.52e-09,17;UBERON:0001301,1.31e-08,1;UBERON:0001242,8.53e-08,4;UBERON:0001262,8.53e-08,4;UBERON:0004786,8.53e-08,4;UBERON:0004808,8.53e-08,4;UBERON:0001277,8.53e-08,4|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0.311211035399766,0.269421344139376,0.326923806226917,0.151357427644931,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,1.82032272387605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0.258543431515556,0,0,0,0,0,0,0,0.714889968290738,0.542621605391443,0.823240336780769,0,0.355391948742546,0,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0.30239029332968,0.496215615637554,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.164254312027618,0,0,0.120859449591622,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.330037999682352,0,0,0,0.096670718292122,0,0,0,0.751941714077915,0.145016693914229,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,0,1.14378116354295,0,0,0,0,1.07923474549989,1.64722217841633,1.88499843753098,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.563391205064483,0.717056761020258,0.196498082026242,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,7.84321467580351,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0.988823245360557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0.628303510868405,0,0,0,0,0,0.627921025580099,0,88.659094622552,77.6407635898249,97.1686988590129,45.7306495865286,0.317873157960757,0,0,0.282706142867882,2.59666367690509,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,9.43524008506963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543616824294456,0.418411385249333,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,6.23903157694976,1.36310417428337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0.701139929541673,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0.150257608997218,4.95046775819434,0,0,0.537052785212442,0,0.398095888698616,0,0,0,0,1.34833881285112,0.214441591374926,0,0,0,0,0.71635536432595,0,1.09642024789354,0,8.87404576046208,0,0,6.90860683462397,0,0,0.194860308839388,0,0,0,0.983091635014877,0,0,0,0,0,0,0,0,0.639471856518258,3.98951802167723,1.10086159299127,0,0,0.212574920101683,0.495743057036009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0,0,0,0,0,0.994581110581374,0,0.40341013740704,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0.215927591218621,0,0,0,1.62737995515375,4.69417335216964,0,0.207216164163037,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,1.26166424835079,0.218531143927391,0,1.01988829741982,0,0.0918948995348449,0,0.378893491091197,2.41167717140561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0|short_description=p4@SMYD3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=64754 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15513 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000488153,ENST00000493441_5end | |||
|coexpression_cluster_id=C93 | |||
|description=CAGE_peak_4_at_SMYD3_5end | |||
|id=chr1:246151834..246151867,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002504;8.17e-21;3!CL:1000279;8.17e-21;3!CL:1000280;8.17e-21;3!CL:0002563;8.38e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,5.41e-21,3;CL:1000279,5.41e-21,3;CL:1000280,5.41e-21,3;CL:0002563,8.53e-08,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!5.58e-11!8;DOID:162!2.80e-09!235;DOID:14566!8.96e-09!239 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.25e-22;8!DOID:8692;9.95e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.28e-22,8;DOID:162,6.42e-08,235;DOID:8692,6.56e-08,31;DOID:14566,1.13e-07,239 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001155;2.59e-12;9!UBERON:0000059;4.19e-10;11!UBERON:0000160;2.78e-09;17!UBERON:0001301;1.31e-08;1!UBERON:0001242;8.38e-08;4!UBERON:0001262;8.38e-08;4!UBERON:0004786;8.38e-08;4!UBERON:0004808;8.38e-08;4!UBERON:0001277;8.38e-08;4!UBERON:0005409;3.21e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001155,2.14e-12,9;UBERON:0000059,3.59e-10,11;UBERON:0000160,2.52e-09,17;UBERON:0001301,1.31e-08,1;UBERON:0001242,8.53e-08,4;UBERON:0001262,8.53e-08,4;UBERON:0004786,8.53e-08,4;UBERON:0004808,8.53e-08,4;UBERON:0001277,8.53e-08,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0.311211035399766,0.269421344139376,0.326923806226917,0.151357427644931,0.576175924479999,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,1.82032272387605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0.4115740113314,1.47008711385542,0,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0.258543431515556,0,0,0,0,0,0,0,0.714889968290738,0.542621605391443,0.823240336780769,0,0.355391948742546,0,0,0.871533458600294,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0.30239029332968,0.496215615637554,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0.164254312027618,0,0,0.120859449591622,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.330037999682352,0,0,0,0.096670718292122,0,0,0,0.751941714077915,0.145016693914229,0.0852266274161009,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0.744316738719335,0,1.14378116354295,0,0,0,0,1.07923474549989,1.64722217841633,1.88499843753098,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0.563391205064483,0.717056761020258,0.196498082026242,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,7.84321467580351,0,0,0.561421621224659,0,0,0,0,0,0,0,0,0,0,0.988823245360557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0.689486746482929,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0.628303510868405,0,0,0,0,0,0.627921025580099,0,88.659094622552,77.6407635898249,97.1686988590129,45.7306495865286,0.317873157960757,0,0,0.282706142867882,2.59666367690509,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,9.43524008506963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.543616824294456,0.418411385249333,0,1.15580235960608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,6.23903157694976,1.36310417428337,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.18628920882415,0,0,0,0,0.235265819698172,0,0,0.149254802886874,0.701139929541673,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0.265841714557995,0,0.150257608997218,4.95046775819434,0,0,0.537052785212442,0,0.398095888698616,0,0,0,0,1.34833881285112,0.214441591374926,0,0,0,0,0.71635536432595,0,1.09642024789354,0,8.87404576046208,0,0,6.90860683462397,0,0,0.194860308839388,0,0,0,0.983091635014877,0,0,0,0,0,0,0,0,0.639471856518258,3.98951802167723,1.10086159299127,0,0,0.212574920101683,0.495743057036009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.88332946650923,0,0,0,0,0,0.994581110581374,0,0.40341013740704,0,0.261906694481422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.135939465953663,0.0657727735628491,0,0,0,0,0,0,0.215927591218621,0,0,0,1.62737995515375,4.69417335216964,0,0.207216164163037,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0.11294608203896,0.219881033490858,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,1.26166424835079,0.218531143927391,0,1.01988829741982,0,0.0918948995348449,0,0.378893491091197,2.41167717140561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0 | |||
|short_description=p4@SMYD3 | |||
}} |
Revision as of 04:43, 12 September 2013
Short description: | p4@SMYD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SMYD3_5end |
Coexpression cluster: | C93_chronic_acute_leukemia_acantholytic_medulloblastoma_testis_papillotubular |
Association with transcript: | 0bp_to_ENST00000488153, ENST00000493441_5end |
EntrezGene: | SMYD3 |
HGNC: | 15513 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 5.41e-21 | 3 |
smooth muscle cell of large intestine | 5.41e-21 | 3 |
smooth muscle cell of colon | 5.41e-21 | 3 |
intestinal epithelial cell | 8.53e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
colon | 2.14e-12 | 9 |
large intestine | 3.59e-10 | 11 |
intestine | 2.52e-09 | 17 |
epididymis | 1.31e-08 | 1 |
intestinal mucosa | 8.53e-08 | 4 |
wall of intestine | 8.53e-08 | 4 |
gastrointestinal system mucosa | 8.53e-08 | 4 |
gastrointestinal system epithelium | 8.53e-08 | 4 |
intestinal epithelium | 8.53e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.28e-22 | 8 |
cancer | 6.42e-08 | 235 |
myeloid leukemia | 6.56e-08 | 31 |
disease of cellular proliferation | 1.13e-07 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.