FFCP PHASE1:Hg19::chr1:248020627..248020645,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25893|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24150|TSSclassifier=S|UniProt=|association_with_transcript=8bp_to_AK096188_5end|coexpression_cluster_id=C3960|description=CAGE_peak_4_at_TRIM58_5end|id=chr1:248020627..248020645,+|ontology_enrichment_celltype=CL:0000077!8.72e-19!19|ontology_enrichment_celltype_v019=CL:0000077;1.27e-30;19!CL:0002541;3.22e-13;3!CL:0000764;4.34e-10;2!CL:0000558;4.34e-10;2!CL:0000174;9.54e-07;3|ontology_enrichment_celltype_v019_2=CL:0000077,1.67e-30,19;CL:0002541,2.78e-13,3;CL:0000764,4.34e-10,2;CL:0000765,4.34e-10,2;CL:0000050,4.34e-10,2;CL:0000038,4.34e-10,2;CL:0000558,4.34e-10,2;CL:0000547,4.34e-10,2;CL:0000549,4.34e-10,2;CL:0000550,4.34e-10,2;CL:0000552,4.34e-10,2;CL:0000213,2.70e-08,58;CL:0000215,2.70e-08,58;CL:0000076,1.90e-07,63|ontology_enrichment_development_v019=UBERON:0007123;1.47e-14;5|ontology_enrichment_disease=DOID:8692!2.18e-07!31|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000178!3.94e-13!15;UBERON:0000179!3.94e-13!15;UBERON:0000463!3.94e-13!15;UBERON:0007023!6.78e-07!115|ontology_enrichment_uberon_v019=UBERON:0000178;1.36e-17;15!UBERON:0000179;1.36e-17;15!UBERON:0000463;1.36e-17;15!UBERON:0002046;1.47e-14;5!UBERON:0003124;3.22e-13;3!UBERON:0000920;3.22e-13;3!UBERON:0002390;4.97e-09;32!UBERON:0002368;8.01e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.04e-17,15;UBERON:0000179,1.04e-17,15;UBERON:0000463,1.04e-17,15;UBERON:0002046,1.50e-14,5;UBERON:0004117,1.50e-14,5;UBERON:0007689,1.50e-14,5;UBERON:0007123,1.50e-14,5;UBERON:0003091,1.50e-14,5;UBERON:0000920,2.78e-13,3;UBERON:0003124,9.73e-10,7;UBERON:0002368,9.87e-07,35|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0.587200878669695,0.553995408531877,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,3.36406560085384,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0.871533458600294,3.39908170018994,0,0,0,0,0,0,0.868687840005475,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0.248107807818777,0.153461973288062,0.561320188866147,0,0,0.804269605718038,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,3.72741790298089,6.27445082459761,0.256450125116389,1.64007322849853,0.325378394664303,0.9273691048295,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.03558180854457,0,0,0,0,6.08937131078603,4.58782324285425,3.98753031021914,1.66762242820452,0.411362273086194,3.8908398671563,4.32025149790492,2.37937552888281,0,0,0.245040215981032,0,0,0,0.159426272728822,0.997896857164083,0.383010740264733,0.635020748171649,0.324621940274555,0,0,0,0,0.846458889008016,0,0,0,0,0,0,0.166849141711909,0.390776190804081,0,0,1.89318974933188,2.33150377598474,2.81974010175699,0,0,0,0,0,0.23874448473769,0.593929361665277,0.921482106297696,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,1.18193840883968,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,18.0028448238262,0.46112780877612,0,0,1.27600463892768,1.55715908783166,3.73124343213044,0,0.784901281975124,0.831058409500782,0,0.19606253431774,0.167821586975843,0.569261198172555,0.317873157960757,0,0,0,0,0,0,0,0.296521128680622,0,0.208843899010911,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0.274083849293502,0.397429223405979,0.189932387867636,0,0.240476460754601,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,9.0250742698191,0,0,0.229160424011684,0,0,0,0,0,2.52209918479682,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,2.39460383124975,0.410462603746695,0,0.113312091520126,0,1.32506888912221,0.904980694530854,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.683060432355218,1.38348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04349012362347,0.450772826991655,0,0,0.181848659202559,0.859284456339908,0,0,0,0,0,3.78554694685953,0.770479321629213,1.07220795687463,1.82696004375648,0.453411851024545,2.31522474323834,40.8710296525801,16.6552622205783,1.54400723580486,3.0699766941019,2.47364804324233,34.5316128504937,1.01365464391844,0,0.690860683462397,7.29263894825717,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.215649622793364,0,0,0,0.212574920101683,0,0,0.318004350653419,0,0,0,0.918736432059601,0,0,0.159633859057151,0,0,0.484100767249525,0.161475645631851,0,0,0,0,0,3.05105676373734,0,0.795664888465099,0.0752103283492573,0,0,0,12.1191218957472,0,0.270150338473579,0,0,0.253663240775627,0,0,0,0,0,0,0,0,0,1.24183318227694,0,0,0.815636795721981,0.328863867814245,0,0.333694205676207,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.68732060563215,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0.8453114551668,0,0,0.128915775947154,0.0999411559249289,0,0,0,0,0,0.143339583151451,0,0.407948941145488,0.436350690340377,0,0,0,0,0,0,0,0,0,0.551369397209069,0,0,0.267964130156178,0,0,0,2.3806443146374,0,0,9.97973576967459,1.0820016907288,3.84022659020617,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@TRIM58}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=25893 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24150 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=8bp_to_AK096188_5end | |||
|coexpression_cluster_id=C3960 | |||
|description=CAGE_peak_4_at_TRIM58_5end | |||
|id=chr1:248020627..248020645,+ | |||
|ontology_enrichment_celltype=CL:0000077!8.72e-19!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.27e-30;19!CL:0002541;3.22e-13;3!CL:0000764;4.34e-10;2!CL:0000558;4.34e-10;2!CL:0000174;9.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.67e-30,19;CL:0002541,2.78e-13,3;CL:0000764,4.34e-10,2;CL:0000765,4.34e-10,2;CL:0000050,4.34e-10,2;CL:0000038,4.34e-10,2;CL:0000558,4.34e-10,2;CL:0000547,4.34e-10,2;CL:0000549,4.34e-10,2;CL:0000550,4.34e-10,2;CL:0000552,4.34e-10,2;CL:0000213,2.70e-08,58;CL:0000215,2.70e-08,58;CL:0000076,1.90e-07,63 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.47e-14;5 | |||
|ontology_enrichment_disease=DOID:8692!2.18e-07!31 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.94e-13!15;UBERON:0000179!3.94e-13!15;UBERON:0000463!3.94e-13!15;UBERON:0007023!6.78e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.36e-17;15!UBERON:0000179;1.36e-17;15!UBERON:0000463;1.36e-17;15!UBERON:0002046;1.47e-14;5!UBERON:0003124;3.22e-13;3!UBERON:0000920;3.22e-13;3!UBERON:0002390;4.97e-09;32!UBERON:0002368;8.01e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.04e-17,15;UBERON:0000179,1.04e-17,15;UBERON:0000463,1.04e-17,15;UBERON:0002046,1.50e-14,5;UBERON:0004117,1.50e-14,5;UBERON:0007689,1.50e-14,5;UBERON:0007123,1.50e-14,5;UBERON:0003091,1.50e-14,5;UBERON:0000920,2.78e-13,3;UBERON:0003124,9.73e-10,7;UBERON:0002368,9.87e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0.587200878669695,0.553995408531877,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.529636723252875,0,0,3.36406560085384,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179117045405697,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0.871533458600294,3.39908170018994,0,0,0,0,0,0,0.868687840005475,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.647142602455851,0,0,0,0,0.248107807818777,0.153461973288062,0.561320188866147,0,0,0.804269605718038,0,0.154209693802656,0,0.0821271560138091,0,0.116210378459959,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,3.72741790298089,6.27445082459761,0.256450125116389,1.64007322849853,0.325378394664303,0.9273691048295,0.183138929636687,0.247528499761764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,1.03558180854457,0,0,0,0,6.08937131078603,4.58782324285425,3.98753031021914,1.66762242820452,0.411362273086194,3.8908398671563,4.32025149790492,2.37937552888281,0,0,0.245040215981032,0,0,0,0.159426272728822,0.997896857164083,0.383010740264733,0.635020748171649,0.324621940274555,0,0,0,0,0.846458889008016,0,0,0,0,0,0,0.166849141711909,0.390776190804081,0,0,1.89318974933188,2.33150377598474,2.81974010175699,0,0,0,0,0,0.23874448473769,0.593929361665277,0.921482106297696,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,1.18193840883968,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,18.0028448238262,0.46112780877612,0,0,1.27600463892768,1.55715908783166,3.73124343213044,0,0.784901281975124,0.831058409500782,0,0.19606253431774,0.167821586975843,0.569261198172555,0.317873157960757,0,0,0,0,0,0,0,0.296521128680622,0,0.208843899010911,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0.274083849293502,0.397429223405979,0.189932387867636,0,0.240476460754601,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,9.0250742698191,0,0,0.229160424011684,0,0,0,0,0,2.52209918479682,0,0,0,0,0,0,0.795229689809303,0.136203406111576,0,0,0,0,0,0.303747783290123,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,2.39460383124975,0.410462603746695,0,0.113312091520126,0,1.32506888912221,0.904980694530854,0.39669780522807,0,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0.110929051536852,0.683060432355218,1.38348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04349012362347,0.450772826991655,0,0,0.181848659202559,0.859284456339908,0,0,0,0,0,3.78554694685953,0.770479321629213,1.07220795687463,1.82696004375648,0.453411851024545,2.31522474323834,40.8710296525801,16.6552622205783,1.54400723580486,3.0699766941019,2.47364804324233,34.5316128504937,1.01365464391844,0,0.690860683462397,7.29263894825717,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0.215649622793364,0,0,0,0.212574920101683,0,0,0.318004350653419,0,0,0,0.918736432059601,0,0,0.159633859057151,0,0,0.484100767249525,0.161475645631851,0,0,0,0,0,3.05105676373734,0,0.795664888465099,0.0752103283492573,0,0,0,12.1191218957472,0,0.270150338473579,0,0,0.253663240775627,0,0,0,0,0,0,0,0,0,1.24183318227694,0,0,0.815636795721981,0.328863867814245,0,0.333694205676207,0,0,0,0.913158720509496,0,0,0,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.68732060563215,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0.8453114551668,0,0,0.128915775947154,0.0999411559249289,0,0,0,0,0,0.143339583151451,0,0.407948941145488,0.436350690340377,0,0,0,0,0,0,0,0,0,0.551369397209069,0,0,0.267964130156178,0,0,0,2.3806443146374,0,0,9.97973576967459,1.0820016907288,3.84022659020617,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@TRIM58 | |||
}} |
Revision as of 04:48, 12 September 2013
Short description: | p4@TRIM58 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_TRIM58_5end |
Coexpression cluster: | C3960_mesothelioma_cholangiocellular_Reticulocytes_thyroid_granulosa_papillary_Whole |
Association with transcript: | 8bp_to_AK096188_5end |
EntrezGene: | TRIM58 |
HGNC: | 24150 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.67e-30 | 19 |
chorionic membrane mesenchymal stem cell | 2.78e-13 | 3 |
erythroid lineage cell | 4.34e-10 | 2 |
erythroblast | 4.34e-10 | 2 |
megakaryocyte-erythroid progenitor cell | 4.34e-10 | 2 |
erythroid progenitor cell | 4.34e-10 | 2 |
reticulocyte | 4.34e-10 | 2 |
proerythroblast | 4.34e-10 | 2 |
basophilic erythroblast | 4.34e-10 | 2 |
polychromatophilic erythroblast | 4.34e-10 | 2 |
orthochromatic erythroblast | 4.34e-10 | 2 |
lining cell | 2.70e-08 | 58 |
barrier cell | 2.70e-08 | 58 |
squamous epithelial cell | 1.90e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
blood | 1.04e-17 | 15 |
haemolymphatic fluid | 1.04e-17 | 15 |
organism substance | 1.04e-17 | 15 |
thyroid gland | 1.50e-14 | 5 |
pharyngeal pouch | 1.50e-14 | 5 |
thyroid diverticulum | 1.50e-14 | 5 |
pharyngeal pouch 2 | 1.50e-14 | 5 |
thyroid primordium | 1.50e-14 | 5 |
egg chorion | 2.78e-13 | 3 |
chorion | 9.73e-10 | 7 |
endocrine gland | 9.87e-07 | 35 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.