FFCP PHASE1:Hg19::chr1:59041821..59041846,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:59041821..59041846,+|id=chr1:59041821..59041846,+|ontology_enrichment_celltype=CL:0000066!3.47e-35!254;CL:0002076!3.25e-13!43;CL:0000076!8.17e-11!62;CL:0002139!1.02e-10!24;CL:0000115!3.18e-09!35;CL:0000223!4.23e-09!59;CL:0000063!1.72e-08!578;CL:0002368!3.64e-08!13;CL:0002078!3.79e-08!44;CL:0002543!6.61e-08!6|ontology_enrichment_celltype_v019=CL:0002543;4.23e-17;6!CL:0002139;4.64e-12;24!CL:0000115;6.26e-10;36!CL:0002618;1.54e-09;3!CL:0000307;9.21e-09;3!CL:0000071;1.28e-08;18!CL:0002076;3.05e-08;42!CL:0002368;5.11e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,1.76e-28,253;CL:0002543,3.32e-17,6;CL:0002139,3.93e-12,24;CL:0000115,4.82e-12,36;CL:0002078,1.93e-10,45;CL:0002076,2.02e-10,42;CL:0000076,2.29e-10,63;CL:0000213,1.39e-09,58;CL:0000215,1.39e-09,58;CL:0002618,1.82e-09,3;CL:0000071,1.08e-08,18;CL:0002546,1.08e-08,18;CL:0000068,1.62e-08,3;CL:0000069,1.62e-08,3;CL:0000307,1.62e-08,3;CL:0000377,1.62e-08,3;CL:0002321,5.41e-08,250;CL:0002368,8.31e-07,13|ontology_enrichment_development_v019=CL:0000377;9.21e-09;3!CL:0002546;1.28e-08;18|ontology_enrichment_disease=DOID:305!4.10e-14!106;DOID:1749!1.18e-08!14;DOID:0050687!8.57e-08!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,4.54e-08,106|ontology_enrichment_uberon=UBERON:0004119!2.21e-10!169;UBERON:0000925!2.21e-10!169;UBERON:0006595!2.21e-10!169;UBERON:0001004!3.23e-10!72;UBERON:0000467!2.74e-09!625;UBERON:0000480!3.42e-09!626;UBERON:0000464!7.56e-09!104;UBERON:0000468!2.43e-08!659;UBERON:0000065!4.66e-08!53;UBERON:0006554!1.21e-07!44;UBERON:0001008!2.60e-07!45;UBERON:0000466!4.98e-07!126;UBERON:0005910!6.61e-07!6;UBERON:0002553!7.98e-07!70;UBERON:0001007!9.34e-07!155;UBERON:0001555!9.34e-07!155;UBERON:0007026!9.34e-07!155|ontology_enrichment_uberon_v019=UBERON:0001638;4.09e-11;9!UBERON:0003920;4.09e-11;9!UBERON:0004582;4.09e-11;9!UBERON:0005910;1.19e-10;6!UBERON:0000486;8.44e-10;12!UBERON:0004638;1.28e-08;18!UBERON:0001986;1.28e-08;18!UBERON:0004852;1.28e-08;18!UBERON:0000487;1.76e-08;22!UBERON:0000365;3.63e-08;5!UBERON:0006914;2.98e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0001638,3.49e-11,9;UBERON:0003920,3.49e-11,9;UBERON:0004582,3.49e-11,9;UBERON:0005910,6.86e-11,6;UBERON:0004638,1.08e-08,18;UBERON:0001986,1.08e-08,18;UBERON:0004852,1.08e-08,18;UBERON:0000487,1.36e-08,22;UBERON:0000365,2.18e-08,5;UBERON:0006914,2.38e-07,25|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0.919421224478927,0.90361775633475,0.739508020333575,0,0,0,0,0,0,0,0,0,0,1.51150377475524,0.485168122375632,0,0.822335776043652,0,0,2.0492856522328,0,0,1.29096936716765,0,0,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0.997318288108159,0,0,0,0,0,1.0429658368404,0,0,0.368277635987565,0,0,0.425208599930087,0,0,1.50176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.196468613246569,0.728590576585084,1.48313777113772,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,1.25396979922086,12.6624211992971,6.40379272836078,6.35969164252873,1.61131726843659,0,0.976248230192678,0.367663080345869,0,7.85837608899902,3.59246996201872,2.0270066486998,9.19899824795299,6.6448596169769,1.64881569537367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0,0,0.491337269247072,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,3.28543450377605,0.545492241181669,1.72082757233402,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0.591534000199219,0.842923450390509,0.241011029883482,0.661763836394364,0.217879444092406,0.474541238222193,0.674156540800822,0,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0,0,0,0.439001141634502,1.1240175325762,1.20634766893957,0.555530670951178,0,0,0,0,0,0.577465791044295,0.462985512576611,0.951270761172991,0.790204397959275,0,0,0.468008530278475,0,0,0.671928512795438,0.850650583454319,0.985143749731331,0.581267877027924,1.91691339582606,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0,1.21251028578504,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.241718899183244,1.00253235151642,2.11786274552562,0,0,0,0.451199612907412,0.462092022626489,0.784349769176855,0,0.422206515571503,0,1.87103075804167,0.215915916102139,3.08454505380579,0,0,0.254876273045038,2.49322802678617,0.223874754722178,0,0,0,0.328014645699706,0,0.309123034943167,0,0,0.574265537996172,0.650060246036521,1.6068392984416,0,0,0.15350367472613,0,0,0,0,0,2.14870389969272,0.57657020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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:59041821..59041846,+ | |||
|id=chr1:59041821..59041846,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.47e-35!254;CL:0002076!3.25e-13!43;CL:0000076!8.17e-11!62;CL:0002139!1.02e-10!24;CL:0000115!3.18e-09!35;CL:0000223!4.23e-09!59;CL:0000063!1.72e-08!578;CL:0002368!3.64e-08!13;CL:0002078!3.79e-08!44;CL:0002543!6.61e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002543;4.23e-17;6!CL:0002139;4.64e-12;24!CL:0000115;6.26e-10;36!CL:0002618;1.54e-09;3!CL:0000307;9.21e-09;3!CL:0000071;1.28e-08;18!CL:0002076;3.05e-08;42!CL:0002368;5.11e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.76e-28,253;CL:0002543,3.32e-17,6;CL:0002139,3.93e-12,24;CL:0000115,4.82e-12,36;CL:0002078,1.93e-10,45;CL:0002076,2.02e-10,42;CL:0000076,2.29e-10,63;CL:0000213,1.39e-09,58;CL:0000215,1.39e-09,58;CL:0002618,1.82e-09,3;CL:0000071,1.08e-08,18;CL:0002546,1.08e-08,18;CL:0000068,1.62e-08,3;CL:0000069,1.62e-08,3;CL:0000307,1.62e-08,3;CL:0000377,1.62e-08,3;CL:0002321,5.41e-08,250;CL:0002368,8.31e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000377;9.21e-09;3!CL:0002546;1.28e-08;18 | |||
|ontology_enrichment_disease=DOID:305!4.10e-14!106;DOID:1749!1.18e-08!14;DOID:0050687!8.57e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.54e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.21e-10!169;UBERON:0000925!2.21e-10!169;UBERON:0006595!2.21e-10!169;UBERON:0001004!3.23e-10!72;UBERON:0000467!2.74e-09!625;UBERON:0000480!3.42e-09!626;UBERON:0000464!7.56e-09!104;UBERON:0000468!2.43e-08!659;UBERON:0000065!4.66e-08!53;UBERON:0006554!1.21e-07!44;UBERON:0001008!2.60e-07!45;UBERON:0000466!4.98e-07!126;UBERON:0005910!6.61e-07!6;UBERON:0002553!7.98e-07!70;UBERON:0001007!9.34e-07!155;UBERON:0001555!9.34e-07!155;UBERON:0007026!9.34e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001638;4.09e-11;9!UBERON:0003920;4.09e-11;9!UBERON:0004582;4.09e-11;9!UBERON:0005910;1.19e-10;6!UBERON:0000486;8.44e-10;12!UBERON:0004638;1.28e-08;18!UBERON:0001986;1.28e-08;18!UBERON:0004852;1.28e-08;18!UBERON:0000487;1.76e-08;22!UBERON:0000365;3.63e-08;5!UBERON:0006914;2.98e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001638,3.49e-11,9;UBERON:0003920,3.49e-11,9;UBERON:0004582,3.49e-11,9;UBERON:0005910,6.86e-11,6;UBERON:0004638,1.08e-08,18;UBERON:0001986,1.08e-08,18;UBERON:0004852,1.08e-08,18;UBERON:0000487,1.36e-08,22;UBERON:0000365,2.18e-08,5;UBERON:0006914,2.38e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0.919421224478927,0.90361775633475,0.739508020333575,0,0,0,0,0,0,0,0,0,0,1.51150377475524,0.485168122375632,0,0.822335776043652,0,0,2.0492856522328,0,0,1.29096936716765,0,0,0.545812300115692,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0.997318288108159,0,0,0,0,0,1.0429658368404,0,0,0.368277635987565,0,0,0.425208599930087,0,0,1.50176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.196468613246569,0.728590576585084,1.48313777113772,0,0.174129737299267,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0,1.25396979922086,12.6624211992971,6.40379272836078,6.35969164252873,1.61131726843659,0,0.976248230192678,0.367663080345869,0,7.85837608899902,3.59246996201872,2.0270066486998,9.19899824795299,6.6448596169769,1.64881569537367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0,0,0.491337269247072,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0.355009592516614,0.10075209822764,0,3.28543450377605,0.545492241181669,1.72082757233402,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0.591534000199219,0.842923450390509,0.241011029883482,0.661763836394364,0.217879444092406,0.474541238222193,0.674156540800822,0,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0,0,0,0.439001141634502,1.1240175325762,1.20634766893957,0.555530670951178,0,0,0,0,0,0.577465791044295,0.462985512576611,0.951270761172991,0.790204397959275,0,0,0.468008530278475,0,0,0.671928512795438,0.850650583454319,0.985143749731331,0.581267877027924,1.91691339582606,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.431428401637234,0,1.21251028578504,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0.241718899183244,1.00253235151642,2.11786274552562,0,0,0,0.451199612907412,0.462092022626489,0.784349769176855,0,0.422206515571503,0,1.87103075804167,0.215915916102139,3.08454505380579,0,0,0.254876273045038,2.49322802678617,0.223874754722178,0,0,0,0.328014645699706,0,0.309123034943167,0,0,0.574265537996172,0.650060246036521,1.6068392984416,0,0,0.15350367472613,0,0,0,0,0,2.14870389969272,0.576570202095319,14.5478492243826,1.11273558941105,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25088746543166,2.01090682660736,2.17781969722645,0.282431402330337,1.29151611801369,1.68471475667626,1.33029046061003,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,2.32840940996271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0.439524537815682,0,0,0,0.71623345421307,0.593929361665277,0.921482106297696,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,1.52776196950456,1.25314822272926,0,0.0986434056369336,0,0,0,0,0,0.520855522170466,0.262379999988587,0,0.227586896570999,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.278847488557207,0.230850775511391,0,0,0,0.325942115766024,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0.141353071433941,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0,0.347119476670262,0.783939179315021,0.957651272384428,0,0,0.870806981601766,1.24251839046515,0.574808199372465,0.484945082442097,0,0.451961481561065,0,0,0,1.17330829640882,2.48492342779755,0.213452994739353,0.19980960958213,0,0,0,1.87271237384595,5.59136410044446,0.471388069233591,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.349843349309,2.32140586367385,0,1.34173875039706,0.315222829196793,0.209818352539992,0,0,1.91915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.427149650270779,0.157204305099666,0.414239055347196,0,0,0,3.19170628885091,0,0,0,0,0.157054096250234,0,0,0.1251909307065,0,0,0,0,0,0,0,2.58792401667989,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0.796483835818512,0.449803112163605,0,0,0.265841714557995,0,0,0.380805212168795,0,0.181848659202559,0.751873899297419,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05461857567374,0,0,1.21543982470953,0.138258436151731,0,0,0,0.655219697692825,0,2.53574548030352,0,0.320075189082423,0,0,0,2.65771064666944,1.24415452006595,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0.392590874004102,0.11796972334774,0.183428598521679,1.15525666150338,0,0,0,0.376051641746286,0,0,0,2.62035068016155,0.591424344868181,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0.354809480650555,0,0,0,0,2.36387681767936,0.667388411352415,0.470958557103084,0,0,0,0,1.43325506366115,0.285906176706625,0,0,0,0,1.65772931330429,0.51215543128185,0,0.430227358820278,2.24830801388074,3.06768257132968,0,1.3746412112643,2.79185747097888,0,0,1.3741032706134,0,0.647428837187895,0,0,0,0,0,0,0.11294608203896,0,0,0.07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| |||
|short_description=p@chr1:59041821..59041846,+ | |||
}} |
Revision as of 06:15, 12 September 2013
Short description: | p@chr1:59041821..59041846, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:59041821..59041846, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.76e-28 | 253 |
vein endothelial cell | 3.32e-17 | 6 |
endothelial cell of vascular tree | 3.93e-12 | 24 |
endothelial cell | 4.82e-12 | 36 |
meso-epithelial cell | 1.93e-10 | 45 |
endo-epithelial cell | 2.02e-10 | 42 |
squamous epithelial cell | 2.29e-10 | 63 |
lining cell | 1.39e-09 | 58 |
barrier cell | 1.39e-09 | 58 |
endothelial cell of umbilical vein | 1.82e-09 | 3 |
blood vessel endothelial cell | 1.08e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.08e-08 | 18 |
duct epithelial cell | 1.62e-08 | 3 |
branched duct epithelial cell | 1.62e-08 | 3 |
tracheal epithelial cell | 1.62e-08 | 3 |
tracheoblast | 1.62e-08 | 3 |
embryonic cell | 5.41e-08 | 250 |
respiratory epithelial cell | 8.31e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
vein | 3.49e-11 | 9 |
venous blood vessel | 3.49e-11 | 9 |
venous system | 3.49e-11 | 9 |
transitional epithelium | 6.86e-11 | 6 |
blood vessel endothelium | 1.08e-08 | 18 |
endothelium | 1.08e-08 | 18 |
cardiovascular system endothelium | 1.08e-08 | 18 |
simple squamous epithelium | 1.36e-08 | 22 |
urothelium | 2.18e-08 | 5 |
squamous epithelium | 2.38e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.54e-08 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.