FFCP PHASE1:Hg19::chr20:61464247..61464260,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1299|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2219|TSSclassifier=S|UniProt=|association_with_transcript=8bp_to_ENST00000462700_5end|coexpression_cluster_id=C183|description=CAGE_peak_4_at_COL9A3_5end|id=chr20:61464247..61464260,+|ontology_enrichment_celltype=CL:0000945!3.70e-25!24;CL:0000826!3.70e-25!24;CL:0000236!9.10e-23!14;CL:0000039!1.75e-16!7;CL:0000586!1.75e-16!7;CL:0000738!2.10e-12!140;CL:0002087!3.52e-12!119;CL:0000542!4.32e-11!53;CL:0000051!4.32e-11!53;CL:0000037!2.54e-10!172;CL:0000566!2.54e-10!172;CL:0000838!4.61e-10!52;CL:0002031!1.17e-09!124;CL:0000988!3.37e-09!182;CL:0002032!2.72e-08!165;CL:0000837!2.72e-08!165;CL:0002150!4.41e-08!3;CL:0000861!4.41e-08!3;CL:0000784!3.55e-07!3|ontology_enrichment_celltype_v019=CL:0000945;2.90e-42;24!CL:0000236;4.29e-42;13!CL:0000039;2.93e-31;7!CL:0000586;2.93e-31;7!CL:0000542;8.30e-14;53!CL:0000817;1.65e-10;1!CL:0000785;1.80e-10;1!CL:0000819;1.80e-10;1|ontology_enrichment_celltype_v019_2=CL:0000945,2.42e-42,24;CL:0000826,2.42e-42,24;CL:0000236,3.55e-39,14;CL:0000039,3.03e-31,7;CL:0000586,3.03e-31,7;CL:0000838,1.26e-18,52;CL:0000542,3.05e-18,53;CL:0000051,3.05e-18,53;CL:0000817,3.85e-13,3;CL:0000819,1.80e-10,1;CL:0002087,7.72e-09,115;CL:0000738,1.58e-08,136;CL:0002031,2.17e-08,120|ontology_enrichment_development_v019=UBERON:0009117;2.86e-14;10!UBERON:0005564;2.86e-14;10!CL:0000051;8.30e-14;53!UBERON:0001045;4.44e-10;1|ontology_enrichment_disease=DOID:3095!5.62e-07!22;DOID:2994!5.62e-07!22|ontology_enrichment_disease_v019=DOID:0060073;1.80e-10;1!DOID:8675;1.80e-10;1!DOID:4960;4.44e-10;1!DOID:1799;4.44e-10;1!DOID:10165;4.44e-10;1!DOID:0070004;4.44e-10;1!DOID:1798;4.44e-10;1!DOID:3095;7.02e-10;22!DOID:2994;7.02e-10;22|ontology_enrichment_disease_v019_2=DOID:0060073,1.80e-10,1;DOID:8675,1.80e-10,1;DOID:1799,4.44e-10,1;DOID:10165,4.44e-10,1;DOID:1798,4.44e-10,1;DOID:4960,5.79e-10,1;DOID:0070004,5.79e-10,1;DOID:3095,7.09e-10,22;DOID:2994,7.09e-10,22|ontology_enrichment_uberon=UBERON:0001737!1.14e-13!9;UBERON:0001557!4.72e-09!19;UBERON:0002106!6.71e-07!3;UBERON:0004854!6.71e-07!3;UBERON:0009034!6.71e-07!3;UBERON:0002095!6.71e-07!3;UBERON:0004782!6.71e-07!3;UBERON:0003281!6.71e-07!3;UBERON:0009664!6.71e-07!3;UBERON:0002296!6.71e-07!3;UBERON:0005602!6.71e-07!3;UBERON:0001179!6.71e-07!3;UBERON:0006293!6.71e-07!3|ontology_enrichment_uberon_v019=UBERON:0000473;8.88e-18;8!UBERON:0003135;5.42e-13;11!UBERON:0001154;4.44e-10;1!UBERON:0001153;4.44e-10;1!UBERON:0009854;4.44e-10;1!UBERON:0000991;7.08e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.51e-18,8;UBERON:0003135,5.25e-13,11;UBERON:0001154,4.85e-10,1;UBERON:0001153,4.85e-10,1;UBERON:0001045,4.85e-10,1;UBERON:0000991,6.98e-07,21;UBERON:0009196,6.98e-07,21;UBERON:0009117,6.98e-07,21;UBERON:0005564,6.98e-07,21|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852139206383318,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0.545812300115692,0,0,0.320929027076094,0,0,0,0,0,0,0,0,1.0429658368404,0,0,0.368277635987565,0,0,0,0,0.112328631146495,0,0,0,0,0,3.51992488922645,0.546138611262131,2.66852776159066,2.98711155796555,3.60356388332411,0.574752439954483,1.32208974556972,0.954053754535364,0.569212969109448,0,1.91136614062614,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238490624305342,1.14398982156026,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0.504641701751257,0.36497735907583,0,0,0,0,0,0.118306800039844,0,0.241011029883482,0.330881918197182,0.217879444092406,0.474541238222193,0.269662616320329,0.784885860501384,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0,0,0,0,0,0,0.743212700502875,78.6267210721624,0.0711418433484141,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0,0,0,0.307240764308458,0.223676107892416,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48655523978033,0,0,8.98519079865807,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0.0874599999961957,0,0,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0.46112780877612,3.14151755434202,0.651884231532048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5823777745086,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1299 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2219 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=8bp_to_ENST00000462700_5end | |||
|coexpression_cluster_id=C183 | |||
|description=CAGE_peak_4_at_COL9A3_5end | |||
|id=chr20:61464247..61464260,+ | |||
|ontology_enrichment_celltype=CL:0000945!3.70e-25!24;CL:0000826!3.70e-25!24;CL:0000236!9.10e-23!14;CL:0000039!1.75e-16!7;CL:0000586!1.75e-16!7;CL:0000738!2.10e-12!140;CL:0002087!3.52e-12!119;CL:0000542!4.32e-11!53;CL:0000051!4.32e-11!53;CL:0000037!2.54e-10!172;CL:0000566!2.54e-10!172;CL:0000838!4.61e-10!52;CL:0002031!1.17e-09!124;CL:0000988!3.37e-09!182;CL:0002032!2.72e-08!165;CL:0000837!2.72e-08!165;CL:0002150!4.41e-08!3;CL:0000861!4.41e-08!3;CL:0000784!3.55e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000945;2.90e-42;24!CL:0000236;4.29e-42;13!CL:0000039;2.93e-31;7!CL:0000586;2.93e-31;7!CL:0000542;8.30e-14;53!CL:0000817;1.65e-10;1!CL:0000785;1.80e-10;1!CL:0000819;1.80e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.42e-42,24;CL:0000826,2.42e-42,24;CL:0000236,3.55e-39,14;CL:0000039,3.03e-31,7;CL:0000586,3.03e-31,7;CL:0000838,1.26e-18,52;CL:0000542,3.05e-18,53;CL:0000051,3.05e-18,53;CL:0000817,3.85e-13,3;CL:0000819,1.80e-10,1;CL:0002087,7.72e-09,115;CL:0000738,1.58e-08,136;CL:0002031,2.17e-08,120 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.86e-14;10!UBERON:0005564;2.86e-14;10!CL:0000051;8.30e-14;53!UBERON:0001045;4.44e-10;1 | |||
|ontology_enrichment_disease=DOID:3095!5.62e-07!22;DOID:2994!5.62e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:0060073;1.80e-10;1!DOID:8675;1.80e-10;1!DOID:4960;4.44e-10;1!DOID:1799;4.44e-10;1!DOID:10165;4.44e-10;1!DOID:0070004;4.44e-10;1!DOID:1798;4.44e-10;1!DOID:3095;7.02e-10;22!DOID:2994;7.02e-10;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0060073,1.80e-10,1;DOID:8675,1.80e-10,1;DOID:1799,4.44e-10,1;DOID:10165,4.44e-10,1;DOID:1798,4.44e-10,1;DOID:4960,5.79e-10,1;DOID:0070004,5.79e-10,1;DOID:3095,7.09e-10,22;DOID:2994,7.09e-10,22 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.14e-13!9;UBERON:0001557!4.72e-09!19;UBERON:0002106!6.71e-07!3;UBERON:0004854!6.71e-07!3;UBERON:0009034!6.71e-07!3;UBERON:0002095!6.71e-07!3;UBERON:0004782!6.71e-07!3;UBERON:0003281!6.71e-07!3;UBERON:0009664!6.71e-07!3;UBERON:0002296!6.71e-07!3;UBERON:0005602!6.71e-07!3;UBERON:0001179!6.71e-07!3;UBERON:0006293!6.71e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.88e-18;8!UBERON:0003135;5.42e-13;11!UBERON:0001154;4.44e-10;1!UBERON:0001153;4.44e-10;1!UBERON:0009854;4.44e-10;1!UBERON:0000991;7.08e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,8.51e-18,8;UBERON:0003135,5.25e-13,11;UBERON:0001154,4.85e-10,1;UBERON:0001153,4.85e-10,1;UBERON:0001045,4.85e-10,1;UBERON:0000991,6.98e-07,21;UBERON:0009196,6.98e-07,21;UBERON:0009117,6.98e-07,21;UBERON:0005564,6.98e-07,21 | |||
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|short_description=p4@COL9A3 | |||
}} |
Revision as of 09:33, 12 September 2013
Short description: | p4@COL9A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_COL9A3_5end |
Coexpression cluster: | C183_acute_non_CD34_diffuse_CD133_myeloma_Burkitt |
Association with transcript: | 8bp_to_ENST00000462700_5end |
EntrezGene: | COL9A3 |
HGNC: | 2219 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.42e-42 | 24 |
pro-B cell | 2.42e-42 | 24 |
B cell | 3.55e-39 | 14 |
germ line cell | 3.03e-31 | 7 |
germ cell | 3.03e-31 | 7 |
lymphoid lineage restricted progenitor cell | 1.26e-18 | 52 |
lymphocyte | 3.05e-18 | 53 |
common lymphoid progenitor | 3.05e-18 | 53 |
precursor B cell | 3.85e-13 | 3 |
B-1 B cell | 1.80e-10 | 1 |
nongranular leukocyte | 7.72e-09 | 115 |
leukocyte | 1.58e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 2.17e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
testis | 8.51e-18 | 8 |
male reproductive organ | 5.25e-13 | 11 |
vermiform appendix | 4.85e-10 | 1 |
caecum | 4.85e-10 | 1 |
midgut | 4.85e-10 | 1 |
gonad | 6.98e-07 | 21 |
indifferent external genitalia | 6.98e-07 | 21 |
indifferent gonad | 6.98e-07 | 21 |
gonad primordium | 6.98e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
lymphatic system cancer | 1.80e-10 | 1 |
lymphosarcoma | 1.80e-10 | 1 |
islet cell tumor | 4.44e-10 | 1 |
endocrine pancreas cancer | 4.44e-10 | 1 |
pancreatic endocrine carcinoma | 4.44e-10 | 1 |
bone marrow cancer | 5.79e-10 | 1 |
myeloma | 5.79e-10 | 1 |
germ cell and embryonal cancer | 7.09e-10 | 22 |
germ cell cancer | 7.09e-10 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.