FFCP PHASE1:Hg19::chr2:74741569..74741620,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3196|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5057|TSSclassifier=S|UniProt=O43763|association_with_transcript=0bp_to_ENST00000233638,NM_016170,uc002smb.1_5end|coexpression_cluster_id=C135|description=CAGE_peak_1_at_TLX2_5end|id=chr2:74741569..74741620,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000243;2.30e-15;15!CL:0000125;2.30e-15;15!CL:0000333;5.69e-15;5!CL:0000095;1.31e-13;17!CL:0002319;3.44e-09;25!CL:0002321;2.84e-07;15!CL:0002573;4.20e-07;2|ontology_enrichment_celltype_v019_2=CL:0000243,2.33e-15,15;CL:0000125,2.33e-15,15;CL:0000030,2.33e-15,15;CL:0000339,2.33e-15,15;CL:0000333,1.32e-14,41;CL:0000095,1.33e-13,17;CL:0000123,1.33e-13,17;CL:0000133,1.83e-09,59;CL:0002319,3.47e-09,25;CL:0000221,2.50e-07,72;CL:0002573,4.21e-07,2|ontology_enrichment_development_v019=CL:0000339;2.30e-15;15!UBERON:0006238;1.07e-13;10|ontology_enrichment_disease=DOID:3093!2.22e-07!11|ontology_enrichment_disease_v019=DOID:3093;1.68e-12;11!DOID:169;1.74e-12;6!DOID:171;1.69e-07;10|ontology_enrichment_disease_v019_2=DOID:169,1.62e-12,6;DOID:3093,1.70e-12,11;DOID:171,1.62e-07,10|ontology_enrichment_uberon=UBERON:0000073!9.54e-22!94;UBERON:0001016!9.54e-22!94;UBERON:0000955!2.08e-18!69;UBERON:0006238!2.08e-18!69;UBERON:0001017!1.51e-17!82;UBERON:0005743!2.91e-17!86;UBERON:0001049!1.48e-15!57;UBERON:0005068!1.48e-15!57;UBERON:0006241!1.48e-15!57;UBERON:0007135!1.48e-15!57;UBERON:0001950!2.88e-15!20;UBERON:0002020!1.75e-14!34;UBERON:0003528!1.75e-14!34;UBERON:0002619!1.73e-13!22;UBERON:0001893!5.00e-13!34;UBERON:0001869!6.26e-13!32;UBERON:0002346!1.25e-12!90;UBERON:0002616!1.38e-12!59;UBERON:0002791!3.66e-12!33;UBERON:0002780!3.83e-12!41;UBERON:0001890!3.83e-12!41;UBERON:0006240!3.83e-12!41;UBERON:0003080!1.07e-11!42;UBERON:0000956!2.37e-11!25;UBERON:0000203!2.37e-11!25;UBERON:0003075!3.09e-11!86;UBERON:0007284!3.09e-11!86;UBERON:0000924!5.44e-11!173;UBERON:0006601!5.44e-11!173;UBERON:0004121!7.02e-10!169;UBERON:0003056!1.72e-09!61;UBERON:0000153!8.12e-09!129;UBERON:0007811!8.12e-09!129;UBERON:0000033!1.34e-08!123;UBERON:0000200!2.32e-08!6;UBERON:0007023!3.77e-08!115;UBERON:0001871!4.15e-08!7|ontology_enrichment_uberon_v019=UBERON:0000010;6.40e-18;8!UBERON:0000013;5.69e-15;5!UBERON:0002410;5.69e-15;5|ontology_enrichment_uberon_v019_2=UBERON:0000010,5.98e-18,8;UBERON:0000013,5.23e-15,5;UBERON:0002410,5.23e-15,5;UBERON:0001016,1.58e-12,89;UBERON:0000955,1.84e-07,68;UBERON:0006238,1.84e-07,68|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501559486172034,0,0,0,2.00538822393312,0,0,0,4.99556146930133,3.90178042679635,0.164437904603676,0,0.579606171470105,0,0,0,1.92625882585863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.579386075843295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.421352420106746,0.204154171254893,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0.337552664482532,0.194874010322397,0.504867548488229,0.460249493211497,0,1.06502877754984,0.705264687593482,0,0,0,0,0,0,0.116193942869518,1.55491582523056,0,1.45990943630332,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0.710246901252508,4.35273926873188,0,1.39452454151951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676695028044854,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75368900001705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0.422250816255987,0,0.552567831062295,1.0077309914171,8.48830064767885,0,0,0,0,0,0.295930216910801,0,2.22273980289274,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,1.52581736317083,0.110579259931225,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0,0,37.8115203324225,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,1.22206028986725,0,0,0.104421949505455,0,0,0,0,0,0,0,4.83962864194656,0.30607276163049,0,0,0.207376382794494,0,0,0,0,0,0,0.347119476670262,0,0,0,1.0319161948297,0,0,0,0.0969890164884194,1.235585773681,0.225980740780532,0,0,0.316553979779393,0.782205530939212,0,0.213452994739353,0.799238438328521,0,0.114536596165916,0,0,1.61528296235062,0,1.22313785466253,0.941425616810999,0,1.44475294950759,0.600420288709789,0.54762151556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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3196 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5057 | |||
|TSSclassifier=S | |||
|UniProt=O43763 | |||
|association_with_transcript=0bp_to_ENST00000233638,NM_016170,uc002smb.1_5end | |||
|coexpression_cluster_id=C135 | |||
|description=CAGE_peak_1_at_TLX2_5end | |||
|id=chr2:74741569..74741620,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000243;2.30e-15;15!CL:0000125;2.30e-15;15!CL:0000333;5.69e-15;5!CL:0000095;1.31e-13;17!CL:0002319;3.44e-09;25!CL:0002321;2.84e-07;15!CL:0002573;4.20e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,2.33e-15,15;CL:0000125,2.33e-15,15;CL:0000030,2.33e-15,15;CL:0000339,2.33e-15,15;CL:0000333,1.32e-14,41;CL:0000095,1.33e-13,17;CL:0000123,1.33e-13,17;CL:0000133,1.83e-09,59;CL:0002319,3.47e-09,25;CL:0000221,2.50e-07,72;CL:0002573,4.21e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000339;2.30e-15;15!UBERON:0006238;1.07e-13;10 | |||
|ontology_enrichment_disease=DOID:3093!2.22e-07!11 | |||
|ontology_enrichment_disease_v019=DOID:3093;1.68e-12;11!DOID:169;1.74e-12;6!DOID:171;1.69e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.62e-12,6;DOID:3093,1.70e-12,11;DOID:171,1.62e-07,10 | |||
|ontology_enrichment_uberon=UBERON:0000073!9.54e-22!94;UBERON:0001016!9.54e-22!94;UBERON:0000955!2.08e-18!69;UBERON:0006238!2.08e-18!69;UBERON:0001017!1.51e-17!82;UBERON:0005743!2.91e-17!86;UBERON:0001049!1.48e-15!57;UBERON:0005068!1.48e-15!57;UBERON:0006241!1.48e-15!57;UBERON:0007135!1.48e-15!57;UBERON:0001950!2.88e-15!20;UBERON:0002020!1.75e-14!34;UBERON:0003528!1.75e-14!34;UBERON:0002619!1.73e-13!22;UBERON:0001893!5.00e-13!34;UBERON:0001869!6.26e-13!32;UBERON:0002346!1.25e-12!90;UBERON:0002616!1.38e-12!59;UBERON:0002791!3.66e-12!33;UBERON:0002780!3.83e-12!41;UBERON:0001890!3.83e-12!41;UBERON:0006240!3.83e-12!41;UBERON:0003080!1.07e-11!42;UBERON:0000956!2.37e-11!25;UBERON:0000203!2.37e-11!25;UBERON:0003075!3.09e-11!86;UBERON:0007284!3.09e-11!86;UBERON:0000924!5.44e-11!173;UBERON:0006601!5.44e-11!173;UBERON:0004121!7.02e-10!169;UBERON:0003056!1.72e-09!61;UBERON:0000153!8.12e-09!129;UBERON:0007811!8.12e-09!129;UBERON:0000033!1.34e-08!123;UBERON:0000200!2.32e-08!6;UBERON:0007023!3.77e-08!115;UBERON:0001871!4.15e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000010;6.40e-18;8!UBERON:0000013;5.69e-15;5!UBERON:0002410;5.69e-15;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,5.98e-18,8;UBERON:0000013,5.23e-15,5;UBERON:0002410,5.23e-15,5;UBERON:0001016,1.58e-12,89;UBERON:0000955,1.84e-07,68;UBERON:0006238,1.84e-07,68 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.501559486172034,0,0,0,2.00538822393312,0,0,0,4.99556146930133,3.90178042679635,0.164437904603676,0,0.579606171470105,0,0,0,1.92625882585863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.579386075843295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379891534993739,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0.161872944368132,0.421352420106746,0.204154171254893,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0.213557388818567,0,0,0,0,0,0.337552664482532,0.194874010322397,0.504867548488229,0.460249493211497,0,1.06502877754984,0.705264687593482,0,0,0,0,0,0,0.116193942869518,1.55491582523056,0,1.45990943630332,0,0,0,0,0,0,0,0.241011029883482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462629081407967,0.710246901252508,4.35273926873188,0,1.39452454151951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676695028044854,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75368900001705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422008249231538,0,0,0.422250816255987,0,0.552567831062295,1.0077309914171,8.48830064767885,0,0,0,0,0,0.295930216910801,0,2.22273980289274,0,0.463840490809256,0,0,0,0,0,0,0,0,0,0.173624994933292,0,0,1.52581736317083,0.110579259931225,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0,0,37.8115203324225,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,1.22206028986725,0,0,0.104421949505455,0,0,0,0,0,0,0,4.83962864194656,0.30607276163049,0,0,0.207376382794494,0,0,0,0,0,0,0.347119476670262,0,0,0,1.0319161948297,0,0,0,0.0969890164884194,1.235585773681,0.225980740780532,0,0,0.316553979779393,0.782205530939212,0,0.213452994739353,0.799238438328521,0,0.114536596165916,0,0,1.61528296235062,0,1.22313785466253,0.941425616810999,0,1.44475294950759,0.600420288709789,0.547621515567972,0,0,0.788662062837943,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0.182248669974074,0,0,0,0,0,0,0,0,0,0,0,0,2.39460383124975,0,0.170388021785422,0.113312091520126,0,0,1.0342636508924,0.26446520348538,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,1.22026264901963,0.625954653532499,0,0.110929051536852,0.310482014706917,5.81064266732169,1.12482367165896,0,0.570930667089935,0.470531639396343,0,0.579684114443301,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15761237161917,0.244736704506468,0.358177682162975,0,0,0.353378291891762,0,0,0,0,0,0.553033744606923,0,0,0,0,0,0,0.79994958341972,0.106691729694141,0,0,3.31390710453313,0,0,121.243863995862,49.815062865267,1.41539347670307,97.1965779908924,0.169732529954025,0,0.247871528518004,0,0,0,0,0,0,0.128458450192919,1.41696576325585,0.319267718114302,0,0,0.553258019713743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540300676947157,0.781078098613847,1.2401207790071,0.443910671357348,0,0,0,0.351742488719241,0,1.07140367175657,0,0,0,0,0,0,0.203909198930495,0.394636641377094,0.118193840883968,0.889851215136553,0,0,0,10.0447459256045,0,0,0.643288897589907,2.52821778772363,0,0.173858272302579,0,0,0,0,0,5.67993603506714,7.15792599976925,0,0,0,0,0,0,0,0,0,0,0,0.935757853848423,5.37167092935694,1.07028081699812,0,17.8103637127595,0.301925687133347,0.463044948647668,2.18559560503957,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0.143339583151451,2.68211655728414,0.475940431336403,0,2.645134202577,0,0,0,0,0,1.90047751517155,0,0,0.18378979906969,0,0,0,0,0.20686599172379,0,0,0.581300188524055,0.0620747142958579,0.33639558774184,0,0,0,0,0,0.143444410785353,0,0,0.106727345877715,0,0.179650404213174,0,0,0,0,0.402547587182052,0 | |||
|short_description=p1@TLX2 | |||
}} |
Revision as of 19:49, 12 September 2013
Short description: | p1@TLX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TLX2_5end |
Coexpression cluster: | C135_neuroblastoma_retinoblastoma_carcinoid_choriocarcinoma_testicular_acute_rectum |
Association with transcript: | 0bp_to_ENST00000233638, NM_016170, uc002smb.1_5end |
EntrezGene: | TLX2 |
HGNC: | 5057 |
UniProt: | O43763 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 2.33e-15 | 15 |
glial cell | 2.33e-15 | 15 |
glioblast | 2.33e-15 | 15 |
glioblast (sensu Vertebrata) | 2.33e-15 | 15 |
migratory neural crest cell | 1.32e-14 | 41 |
neuron associated cell | 1.33e-13 | 17 |
neuron associated cell (sensu Vertebrata) | 1.33e-13 | 17 |
neurectodermal cell | 1.83e-09 | 59 |
neural cell | 3.47e-09 | 25 |
ectodermal cell | 2.50e-07 | 72 |
Schwann cell | 4.21e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
peripheral nervous system | 5.98e-18 | 8 |
sympathetic nervous system | 5.23e-15 | 5 |
autonomic nervous system | 5.23e-15 | 5 |
nervous system | 1.58e-12 | 89 |
brain | 1.84e-07 | 68 |
future brain | 1.84e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.62e-12 | 6 |
nervous system cancer | 1.70e-12 | 11 |
neuroectodermal tumor | 1.62e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.