FFCP PHASE1:Hg19::chr3:150690508..150690520,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7401|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=12605|TSSclassifier=S|UniProt=|association_with_transcript=-7bp_to_ENST00000472224_5end|coexpression_cluster_id=C369|description=CAGE_peak_1_at_CLRN1_5end|id=chr3:150690508..150690520,-|ontology_enrichment_celltype=CL:0000064!6.80e-30!3;CL:0005012!6.80e-30!3;CL:0000067!6.80e-30!3;CL:0002304!6.80e-30!3;CL:0000039!6.61e-13!7;CL:0000586!6.61e-13!7;CL:0000075!1.83e-12!27;CL:0000710!6.59e-12!20;CL:0000342!6.14e-11!1;CL:0002565!6.14e-11!1;CL:0002322!2.00e-08!5;CL:0002077!3.73e-07!33|ontology_enrichment_celltype_v019=CL:0000064;1.49e-59;3!CL:0000067;1.49e-59;3!CL:0005012;1.49e-59;3!CL:0002304;1.49e-59;3!CL:0000342;6.31e-21;1!CL:0002565;6.31e-21;1!CL:0000075;3.53e-12;27!CL:0000710;1.44e-09;20|ontology_enrichment_celltype_v019_2=CL:0000064,8.17e-60,3;CL:0000067,8.17e-60,3;CL:0005012,8.17e-60,3;CL:0002304,8.17e-60,3;CL:0000342,9.43e-21,1;CL:0002565,9.43e-21,1;CL:0000075,3.24e-12,27;CL:0000710,1.32e-09,20|ontology_enrichment_development_v019=UBERON:0003056;5.18e-08;3|ontology_enrichment_disease=DOID:2355!5.57e-11!1|ontology_enrichment_disease_v019=DOID:2355;6.31e-21;1!DOID:74;3.70e-11;2|ontology_enrichment_disease_v019_2=DOID:2355,7.72e-21,1;DOID:74,4.09e-11,2|ontology_enrichment_uberon=UBERON:0000488!4.96e-39!4;UBERON:0001778!6.80e-30!3;UBERON:0001775!6.80e-30!3;UBERON:0002203!3.80e-26!6;UBERON:0001768!3.80e-26!6;UBERON:0000970!3.10e-23!20;UBERON:0002104!4.25e-22!21;UBERON:0007625!4.35e-22!11;UBERON:0000020!4.04e-20!23;UBERON:0001032!2.97e-19!24;UBERON:0004456!2.97e-19!24;UBERON:0000019!4.11e-18!19;UBERON:0000047!4.11e-18!19;UBERON:0004088!4.11e-18!19;UBERON:0003072!4.11e-18!19;UBERON:0003071!4.11e-18!19;UBERON:0004128!4.11e-18!19;UBERON:0001801!2.41e-17!14;UBERON:0001456!2.38e-16!21;UBERON:0002200!2.18e-14!11;UBERON:0006876!2.18e-14!11;UBERON:0002240!1.60e-13!3;UBERON:0005085!1.01e-11!29;UBERON:0000473!2.31e-11!8;UBERON:0002506!6.14e-11!1;UBERON:0001769!6.14e-11!1;UBERON:0005174!1.79e-08!5;UBERON:0001137!1.79e-08!5;UBERON:0003135!2.11e-08!11;UBERON:0003075!1.02e-07!86;UBERON:0007284!1.02e-07!86;UBERON:0002346!2.52e-07!90;UBERON:0003056!6.12e-07!61;UBERON:0001444!6.76e-07!48|ontology_enrichment_uberon_v019=UBERON:0000488;1.30e-78;4!UBERON:0001778;1.49e-59;3!UBERON:0001775;1.49e-59;3!UBERON:0002203;1.18e-52;6!UBERON:0001768;1.18e-52;6!UBERON:0002200;1.18e-52;6!UBERON:0000970;3.49e-48;20!UBERON:0002104;6.83e-46;21!UBERON:0007625;5.88e-45;11!UBERON:0000020;6.61e-42;23!UBERON:0001032;3.67e-40;24!UBERON:0004456;3.67e-40;24!UBERON:0000019;2.04e-37;19!UBERON:0000047;2.04e-37;19!UBERON:0004088;2.04e-37;19!UBERON:0010230;2.04e-37;19!UBERON:0001801;2.08e-35;14!UBERON:0001456;7.21e-34;21!UBERON:0006876;5.26e-29;11!UBERON:0002506;6.31e-21;1!UBERON:0001769;6.31e-21;1!UBERON:0010371;4.20e-16;31!UBERON:0001444;3.06e-11;48!UBERON:0000033;7.10e-09;50!UBERON:0000153;5.41e-08;54!UBERON:0007811;9.38e-08;52|ontology_enrichment_uberon_v019_2=UBERON:0000488,1.06e-78,4;UBERON:0001778,8.17e-60,3;UBERON:0001775,8.17e-60,3;UBERON:0002203,1.03e-52,6;UBERON:0001768,1.03e-52,6;UBERON:0002200,1.03e-52,6;UBERON:0000970,6.18e-46,21;UBERON:0002104,6.18e-46,21;UBERON:0007625,5.37e-45,11;UBERON:0000020,3.36e-40,24;UBERON:0001032,3.36e-40,24;UBERON:0004456,3.36e-40,24;UBERON:0000019,1.40e-35,20;UBERON:0000047,1.40e-35,20;UBERON:0010312,1.40e-35,20;UBERON:0004088,1.40e-35,20;UBERON:0010230,1.40e-35,20;UBERON:0003072,1.40e-35,20;UBERON:0004128,1.40e-35,20;UBERON:0003071,1.40e-35,20;UBERON:0001801,1.94e-35,14;UBERON:0001456,2.33e-32,22;UBERON:0006876,4.89e-29,11;UBERON:0005085,5.38e-23,31;UBERON:0002506,9.43e-21,1;UBERON:0001769,9.43e-21,1;UBERON:0001444,1.48e-14,49;UBERON:0000033,9.92e-13,56;UBERON:0000153,1.72e-11,62;UBERON:0007811,1.72e-11,62;UBERON:0003056,1.72e-11,61;UBERON:0003075,1.48e-08,82;UBERON:0007284,1.48e-08,82;UBERON:0002346,3.73e-08,86;UBERON:0010371,1.00e-06,104|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5878995223756,1.77383517970051,1.58102614247627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.580969714347592,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3725424823882,0,0,0,0,0,0,0,22.8382897800901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7401 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12605 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-7bp_to_ENST00000472224_5end | |||
|coexpression_cluster_id=C369 | |||
|description=CAGE_peak_1_at_CLRN1_5end | |||
|id=chr3:150690508..150690520,- | |||
|ontology_enrichment_celltype=CL:0000064!6.80e-30!3;CL:0005012!6.80e-30!3;CL:0000067!6.80e-30!3;CL:0002304!6.80e-30!3;CL:0000039!6.61e-13!7;CL:0000586!6.61e-13!7;CL:0000075!1.83e-12!27;CL:0000710!6.59e-12!20;CL:0000342!6.14e-11!1;CL:0002565!6.14e-11!1;CL:0002322!2.00e-08!5;CL:0002077!3.73e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0000064;1.49e-59;3!CL:0000067;1.49e-59;3!CL:0005012;1.49e-59;3!CL:0002304;1.49e-59;3!CL:0000342;6.31e-21;1!CL:0002565;6.31e-21;1!CL:0000075;3.53e-12;27!CL:0000710;1.44e-09;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,8.17e-60,3;CL:0000067,8.17e-60,3;CL:0005012,8.17e-60,3;CL:0002304,8.17e-60,3;CL:0000342,9.43e-21,1;CL:0002565,9.43e-21,1;CL:0000075,3.24e-12,27;CL:0000710,1.32e-09,20 | |||
|ontology_enrichment_development_v019=UBERON:0003056;5.18e-08;3 | |||
|ontology_enrichment_disease=DOID:2355!5.57e-11!1 | |||
|ontology_enrichment_disease_v019=DOID:2355;6.31e-21;1!DOID:74;3.70e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:2355,7.72e-21,1;DOID:74,4.09e-11,2 | |||
|ontology_enrichment_uberon=UBERON:0000488!4.96e-39!4;UBERON:0001778!6.80e-30!3;UBERON:0001775!6.80e-30!3;UBERON:0002203!3.80e-26!6;UBERON:0001768!3.80e-26!6;UBERON:0000970!3.10e-23!20;UBERON:0002104!4.25e-22!21;UBERON:0007625!4.35e-22!11;UBERON:0000020!4.04e-20!23;UBERON:0001032!2.97e-19!24;UBERON:0004456!2.97e-19!24;UBERON:0000019!4.11e-18!19;UBERON:0000047!4.11e-18!19;UBERON:0004088!4.11e-18!19;UBERON:0003072!4.11e-18!19;UBERON:0003071!4.11e-18!19;UBERON:0004128!4.11e-18!19;UBERON:0001801!2.41e-17!14;UBERON:0001456!2.38e-16!21;UBERON:0002200!2.18e-14!11;UBERON:0006876!2.18e-14!11;UBERON:0002240!1.60e-13!3;UBERON:0005085!1.01e-11!29;UBERON:0000473!2.31e-11!8;UBERON:0002506!6.14e-11!1;UBERON:0001769!6.14e-11!1;UBERON:0005174!1.79e-08!5;UBERON:0001137!1.79e-08!5;UBERON:0003135!2.11e-08!11;UBERON:0003075!1.02e-07!86;UBERON:0007284!1.02e-07!86;UBERON:0002346!2.52e-07!90;UBERON:0003056!6.12e-07!61;UBERON:0001444!6.76e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;1.30e-78;4!UBERON:0001778;1.49e-59;3!UBERON:0001775;1.49e-59;3!UBERON:0002203;1.18e-52;6!UBERON:0001768;1.18e-52;6!UBERON:0002200;1.18e-52;6!UBERON:0000970;3.49e-48;20!UBERON:0002104;6.83e-46;21!UBERON:0007625;5.88e-45;11!UBERON:0000020;6.61e-42;23!UBERON:0001032;3.67e-40;24!UBERON:0004456;3.67e-40;24!UBERON:0000019;2.04e-37;19!UBERON:0000047;2.04e-37;19!UBERON:0004088;2.04e-37;19!UBERON:0010230;2.04e-37;19!UBERON:0001801;2.08e-35;14!UBERON:0001456;7.21e-34;21!UBERON:0006876;5.26e-29;11!UBERON:0002506;6.31e-21;1!UBERON:0001769;6.31e-21;1!UBERON:0010371;4.20e-16;31!UBERON:0001444;3.06e-11;48!UBERON:0000033;7.10e-09;50!UBERON:0000153;5.41e-08;54!UBERON:0007811;9.38e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,1.06e-78,4;UBERON:0001778,8.17e-60,3;UBERON:0001775,8.17e-60,3;UBERON:0002203,1.03e-52,6;UBERON:0001768,1.03e-52,6;UBERON:0002200,1.03e-52,6;UBERON:0000970,6.18e-46,21;UBERON:0002104,6.18e-46,21;UBERON:0007625,5.37e-45,11;UBERON:0000020,3.36e-40,24;UBERON:0001032,3.36e-40,24;UBERON:0004456,3.36e-40,24;UBERON:0000019,1.40e-35,20;UBERON:0000047,1.40e-35,20;UBERON:0010312,1.40e-35,20;UBERON:0004088,1.40e-35,20;UBERON:0010230,1.40e-35,20;UBERON:0003072,1.40e-35,20;UBERON:0004128,1.40e-35,20;UBERON:0003071,1.40e-35,20;UBERON:0001801,1.94e-35,14;UBERON:0001456,2.33e-32,22;UBERON:0006876,4.89e-29,11;UBERON:0005085,5.38e-23,31;UBERON:0002506,9.43e-21,1;UBERON:0001769,9.43e-21,1;UBERON:0001444,1.48e-14,49;UBERON:0000033,9.92e-13,56;UBERON:0000153,1.72e-11,62;UBERON:0007811,1.72e-11,62;UBERON:0003056,1.72e-11,61;UBERON:0003075,1.48e-08,82;UBERON:0007284,1.48e-08,82;UBERON:0002346,3.73e-08,86;UBERON:0010371,1.00e-06,104 | |||
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|short_description=p1@CLRN1 | |||
}} |
Revision as of 22:08, 12 September 2013
Short description: | p1@CLRN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CLRN1_5end |
Coexpression cluster: | C369_Lens_eye_Ciliary_retina_H9_Retinal_Renal |
Association with transcript: | -7bp_to_ENST00000472224_5end |
EntrezGene: | CLRN1 |
HGNC: | 12605 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 8.17e-60 | 3 |
ciliated epithelial cell | 8.17e-60 | 3 |
multi-ciliated epithelial cell | 8.17e-60 | 3 |
non-pigmented ciliary epithelial cell | 8.17e-60 | 3 |
pigment cell (sensu Vertebrata) | 9.43e-21 | 1 |
iris pigment epithelial cell | 9.43e-21 | 1 |
columnar/cuboidal epithelial cell | 3.24e-12 | 27 |
neurecto-epithelial cell | 1.32e-09 | 20 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 1.06e-78 | 4 |
ciliary epithelium | 8.17e-60 | 3 |
ciliary body | 8.17e-60 | 3 |
vasculature of eye | 1.03e-52 | 6 |
uvea | 1.03e-52 | 6 |
vasculature of head | 1.03e-52 | 6 |
eye | 6.18e-46 | 21 |
visual system | 6.18e-46 | 21 |
pigment epithelium of eye | 5.37e-45 | 11 |
sense organ | 3.36e-40 | 24 |
sensory system | 3.36e-40 | 24 |
entire sense organ system | 3.36e-40 | 24 |
camera-type eye | 1.40e-35 | 20 |
simple eye | 1.40e-35 | 20 |
immature eye | 1.40e-35 | 20 |
ocular region | 1.40e-35 | 20 |
eyeball of camera-type eye | 1.40e-35 | 20 |
optic cup | 1.40e-35 | 20 |
optic vesicle | 1.40e-35 | 20 |
eye primordium | 1.40e-35 | 20 |
anterior segment of eyeball | 1.94e-35 | 14 |
face | 2.33e-32 | 22 |
vasculature of organ | 4.89e-29 | 11 |
ectodermal placode | 5.38e-23 | 31 |
iris epithelium | 9.43e-21 | 1 |
iris | 9.43e-21 | 1 |
subdivision of head | 1.48e-14 | 49 |
head | 9.92e-13 | 56 |
anterior region of body | 1.72e-11 | 62 |
craniocervical region | 1.72e-11 | 62 |
pre-chordal neural plate | 1.72e-11 | 61 |
neural plate | 1.48e-08 | 82 |
presumptive neural plate | 1.48e-08 | 82 |
neurectoderm | 3.73e-08 | 86 |
ecto-epithelium | 1.00e-06 | 104 |
Ontology term | p-value | n |
---|---|---|
anemia | 7.72e-21 | 1 |
hematopoietic system disease | 4.09e-11 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.