FFCP PHASE1:Mm9::chr12:25779393..25779395,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:25779393..25779395,-|id=chr12:25779393..25779395,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000068,8.11e-12,3;CL:0002202,8.11e-12,3;CL:0000069,8.11e-12,3;CL:0002632,8.11e-12,3;CL:0002368,8.11e-12,3;CL:0000307,8.11e-12,3;CL:0000377,8.11e-12,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0009569!4.19e-08!66;UBERON:0002021!1.91e-07!10;UBERON:0000411!1.91e-07!10;UBERON:0001950!1.91e-07!10;UBERON:0000481!2.24e-07!230;UBERON:0005172!3.24e-07!49;UBERON:0005173!3.24e-07!49;UBERON:0002417!3.24e-07!49;UBERON:0000916!3.24e-07!49;UBERON:0000956!3.60e-07!21;UBERON:0001869!3.60e-07!21;UBERON:0000203!3.60e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0003126,8.11e-12,3;UBERON:0001005,8.11e-12,3;UBERON:0007196,8.11e-12,3;UBERON:0001558,8.11e-12,3;UBERON:0002619,8.60e-10,17;UBERON:0002021,3.49e-09,10;UBERON:0000411,3.49e-09,10;UBERON:0001950,3.49e-09,10;UBERON:0000956,9.29e-08,21;UBERON:0001869,9.29e-08,21;UBERON:0000203,9.29e-08,21;UBERON:0003528,7.24e-07,29;UBERON:0002791,7.24e-07,29;UBERON:0001893,7.24e-07,29|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0.140788722151667,0.234064526321993,0,0,0.171200729931206,0,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0,0.496454756004426,0.783599367416806,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0.204169356262369,0,0.7813353445238,1.0470474879476,1.17646297606203,0,0,0,0,0,0.782391344348039,2.61630187656536,0,1.55543919259427,0.979904951377538,0,0,0,0,0,0,0,0,0,0,0,0,0.449949858640699,0,0,0,0,0.103689612308478,0.270011876663381,0.630974884054146,0,0,0.122490799214954,1.43768206527355,0,0,0,0,0,1.00636407962651,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0.869593466105033,1.72084775396277,0,0.539703191637817,0,0,0,0.170430322578058,0,0,0.704217098883403,0,0,0,2.38140145112336,1.26679932737549,2.52762222507392,0,0,0.29688427812965,0.867426633830679,2.74018930480927,2.07553947530453,1.65794904607885,0.352766121407114,0.251333182659351,0.494389935468748,0.144599356919912,0,0,0,0,0,0,0.41889341362691,0.255457055208591,0.11981512450592,1.79970819298022,0,0,0,0,0.347648640384553,0.767146371990992,0,0.324482526135515,0.203678727700633,0,0,0,0.260240885925407,0.229902104433473,0,0.30140963567143,0.0680364991513279,0.12811372028485,0,0,0.215567992932842,0,0,0.219195732427575,0.556094498451196,0,0.411564272815887,0,0,0.51469581422943,0.284163499395593,0.207125772535502,1.17263029990548,0.36012412292203,0.23674473558521,0.196764231747404,0.308534225774757,0.232533944750408,0,0,0,0,0.162137619091711,0,0.219550115291051,0,0.210289948564127,0.205809224758569,0.330418782983798,0,0.426576501070468,1.39342003116263,0,0,0,0,0,0.164698954724011,0.502670417600539,0.795825888164603,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0.228497025219458,0,1.62921062276251,0.775809948670503,0.140271639780637,0.316182685621286,1.03327103585722,0.941992367048249,0.863780147452604,0.889357881261447,0,0.196558995113203,0,0,0,0.25462585178142,0,0.162135226775035,0.823684239564244,2.87536413054709,0.744281895337007,0.312037673114561,0.505157755894224,1.07638448113147,0.964887042726734,0,0,0,0.509235257325564,0.938760993154008,0.167506257441816,0,0.195133647857799,0,0.664394068946325,0.159454768657487,0.327726629431476,0,0.289298117163023,0,0,0,0.551873492609465,0.481651769963376,0.117211686592203,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0,0,0.534196811001766,0.325773918707152,0,0,0,0.302323556964751,0.943025398779491,0,0.922305443831782,0,0,0,0.316036757935816,0,0,0,0.36012218806262,0.646793418913773,0,0,0.178368817602071,0.658196082408484,0.608929898229199,0,0.42366414172764,0,0,0,0.120625849856312,0,0.164140899745061,0.582961673259701,0,0.170870880797853,0.206386867963223,0.740778109478847,0.376736914009382,0,0.228778173206523,0,0,0,0.954670618015114,0.158167996790568,0,0.432021363287205,0.836353184057875,0,0.809186078308924,0.0826534557253359,0.523511883968059,0.129614973291793,0.621339313086926,0,0.149516546043979,0,0.583353565032143,0,0.168956125490778,0.117357238645754,0,0.104859344425711,0,0,0.316011120628178,0,0.410843828659309,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,0.443971906748129,0.358855426437903,0,0,0,0.183151624267265,0,0.501572104035363,1.12950368523413,0.920650473014354,2.29158205375759,0.859265911718438,2.74033007908257,0.755393897389701,0.675022500231806,0.45032120322422,2.26571204492102,2.07104124700728,0.93408612825759,0,0,0,0,0.367687016900028,0.222246727801615,0,0,0.252697211763798,0,0,0.0936415074698824,0.128050304809739,0.17230640686684,0.476293691283074,0,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0.145346416632329,0.188218760830661,0.423073039458382,0.182927972872773,0,0,0,0,0,0,0,0.385813221962283,0,0.233931608445408,0,0,0,0|short_description=p@chr12:25779393..25779395,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:25779393..25779395,- | |||
|id=chr12:25779393..25779395,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,8.11e-12,3;CL:0002202,8.11e-12,3;CL:0000069,8.11e-12,3;CL:0002632,8.11e-12,3;CL:0002368,8.11e-12,3;CL:0000307,8.11e-12,3;CL:0000377,8.11e-12,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!4.19e-08!66;UBERON:0002021!1.91e-07!10;UBERON:0000411!1.91e-07!10;UBERON:0001950!1.91e-07!10;UBERON:0000481!2.24e-07!230;UBERON:0005172!3.24e-07!49;UBERON:0005173!3.24e-07!49;UBERON:0002417!3.24e-07!49;UBERON:0000916!3.24e-07!49;UBERON:0000956!3.60e-07!21;UBERON:0001869!3.60e-07!21;UBERON:0000203!3.60e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,8.11e-12,3;UBERON:0001005,8.11e-12,3;UBERON:0007196,8.11e-12,3;UBERON:0001558,8.11e-12,3;UBERON:0002619,8.60e-10,17;UBERON:0002021,3.49e-09,10;UBERON:0000411,3.49e-09,10;UBERON:0001950,3.49e-09,10;UBERON:0000956,9.29e-08,21;UBERON:0001869,9.29e-08,21;UBERON:0000203,9.29e-08,21;UBERON:0003528,7.24e-07,29;UBERON:0002791,7.24e-07,29;UBERON:0001893,7.24e-07,29 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0,0.140788722151667,0.234064526321993,0,0,0.171200729931206,0,0,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0,0.496454756004426,0.783599367416806,0,0,0,0,0,0,0.252030129759931,0,0,0,0,0,0,0.204169356262369,0,0.7813353445238,1.0470474879476,1.17646297606203,0,0,0,0,0,0.782391344348039,2.61630187656536,0,1.55543919259427,0.979904951377538,0,0,0,0,0,0,0,0,0,0,0,0,0.449949858640699,0,0,0,0,0.103689612308478,0.270011876663381,0.630974884054146,0,0,0.122490799214954,1.43768206527355,0,0,0,0,0,1.00636407962651,0,0,0,0,0,0.142371680799103,0,0.075726193333184,0,0.869593466105033,1.72084775396277,0,0.539703191637817,0,0,0,0.170430322578058,0,0,0.704217098883403,0,0,0,2.38140145112336,1.26679932737549,2.52762222507392,0,0,0.29688427812965,0.867426633830679,2.74018930480927,2.07553947530453,1.65794904607885,0.352766121407114,0.251333182659351,0.494389935468748,0.144599356919912,0,0,0,0,0,0,0.41889341362691,0.255457055208591,0.11981512450592,1.79970819298022,0,0,0,0,0.347648640384553,0.767146371990992,0,0.324482526135515,0.203678727700633,0,0,0,0.260240885925407,0.229902104433473,0,0.30140963567143,0.0680364991513279,0.12811372028485,0,0,0.215567992932842,0,0,0.219195732427575,0.556094498451196,0,0.411564272815887,0,0,0.51469581422943,0.284163499395593,0.207125772535502,1.17263029990548,0.36012412292203,0.23674473558521,0.196764231747404,0.308534225774757,0.232533944750408,0,0,0,0,0.162137619091711,0,0.219550115291051,0,0.210289948564127,0.205809224758569,0.330418782983798,0,0.426576501070468,1.39342003116263,0,0,0,0,0,0.164698954724011,0.502670417600539,0.795825888164603,0.38992817423824,0,0.216138049874694,0.199141273254367,0.189667900953082,0.228497025219458,0,1.62921062276251,0.775809948670503,0.140271639780637,0.316182685621286,1.03327103585722,0.941992367048249,0.863780147452604,0.889357881261447,0,0.196558995113203,0,0,0,0.25462585178142,0,0.162135226775035,0.823684239564244,2.87536413054709,0.744281895337007,0.312037673114561,0.505157755894224,1.07638448113147,0.964887042726734,0,0,0,0.509235257325564,0.938760993154008,0.167506257441816,0,0.195133647857799,0,0.664394068946325,0.159454768657487,0.327726629431476,0,0.289298117163023,0,0,0,0.551873492609465,0.481651769963376,0.117211686592203,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0,0,0.534196811001766,0.325773918707152,0,0,0,0.302323556964751,0.943025398779491,0,0.922305443831782,0,0,0,0.316036757935816,0,0,0,0.36012218806262,0.646793418913773,0,0,0.178368817602071,0.658196082408484,0.608929898229199,0,0.42366414172764,0,0,0,0.120625849856312,0,0.164140899745061,0.582961673259701,0,0.170870880797853,0.206386867963223,0.740778109478847,0.376736914009382,0,0.228778173206523,0,0,0,0.954670618015114,0.158167996790568,0,0.432021363287205,0.836353184057875,0,0.809186078308924,0.0826534557253359,0.523511883968059,0.129614973291793,0.621339313086926,0,0.149516546043979,0,0.583353565032143,0,0.168956125490778,0.117357238645754,0,0.104859344425711,0,0,0.316011120628178,0,0.410843828659309,0,0,0,0,0.147689527174577,0,0,0,0,0,0,0.226730383615211,0.443971906748129,0.358855426437903,0,0,0,0.183151624267265,0,0.501572104035363,1.12950368523413,0.920650473014354,2.29158205375759,0.859265911718438,2.74033007908257,0.755393897389701,0.675022500231806,0.45032120322422,2.26571204492102,2.07104124700728,0.93408612825759,0,0,0,0,0.367687016900028,0.222246727801615,0,0,0.252697211763798,0,0,0.0936415074698824,0.128050304809739,0.17230640686684,0.476293691283074,0,0,0.412085900803307,0.147198920134397,0.342869252385415,0.177475806159338,0.238436189947321,0.145346416632329,0.188218760830661,0.423073039458382,0.182927972872773,0,0,0,0,0,0,0,0.385813221962283,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr12:25779393..25779395,- | |||
}} |
Revision as of 22:37, 12 September 2013
Short description: | p@chr12:25779393..25779395, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:25779393..25779395, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 8.11e-12 | 3 |
epithelial cell of tracheobronchial tree | 8.11e-12 | 3 |
branched duct epithelial cell | 8.11e-12 | 3 |
epithelial cell of lower respiratory tract | 8.11e-12 | 3 |
respiratory epithelial cell | 8.11e-12 | 3 |
tracheal epithelial cell | 8.11e-12 | 3 |
tracheoblast | 8.11e-12 | 3 |
Ontology term | p-value | n |
---|---|---|
trachea | 8.11e-12 | 3 |
respiratory airway | 8.11e-12 | 3 |
tracheobronchial tree | 8.11e-12 | 3 |
lower respiratory tract | 8.11e-12 | 3 |
regional part of cerebral cortex | 8.60e-10 | 17 |
occipital lobe | 3.49e-09 | 10 |
visual cortex | 3.49e-09 | 10 |
neocortex | 3.49e-09 | 10 |
cerebral cortex | 9.29e-08 | 21 |
cerebral hemisphere | 9.29e-08 | 21 |
pallium | 9.29e-08 | 21 |
brain grey matter | 7.24e-07 | 29 |
regional part of telencephalon | 7.24e-07 | 29 |
telencephalon | 7.24e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.