FFCP PHASE1:Hg19::chr4:146402795..146402816,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4086|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6767|TSSclassifier=S|UniProt=D6RDN7|association_with_transcript=-33bp_to_ENST00000514831_5end|description=CAGE_peak_7_at_SMAD1_5end|id=chr4:146402795..146402816,+|ontology_enrichment_celltype=CL:0002139!3.81e-08!24|ontology_enrichment_celltype_v019=CL:0002139;5.22e-13;24!CL:0002138;1.45e-09;6!CL:0000115;2.24e-09;36!CL:0002543;9.79e-07;6|ontology_enrichment_celltype_v019_2=CL:0002139,3.46e-13,24;CL:0000115,1.13e-10,36;CL:0005020,1.16e-09,6;CL:0002138,1.16e-09,6;CL:0005022,1.16e-09,6;CL:0002078,3.20e-09,45;CL:0000071,8.36e-07,18;CL:0002546,8.36e-07,18;CL:0002543,9.32e-07,6|ontology_enrichment_development_v019=CL:0005022;1.45e-09;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!7.20e-07!659|ontology_enrichment_uberon_v019=UBERON:0001473;7.22e-07;8!UBERON:0004536;7.22e-07;8!UBERON:0006558;7.22e-07;8!UBERON:0002465;7.78e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0001473,6.12e-07,8;UBERON:0004536,6.12e-07,8;UBERON:0006558,6.12e-07,8;UBERON:0002465,7.65e-07,10;UBERON:0004638,8.36e-07,18;UBERON:0001986,8.36e-07,18;UBERON:0004852,8.36e-07,18|phase1_expression=0.363356758541113,0.428201047781966,0,0,0,0.872338524100369,0,0.631719873426831,0,0.245733936501509,0,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0.602694528023977,0.730310090387373,2.43966399395253,0.246242116153576,0.408001382488506,0,0.85870796139317,1.50561867580173,1.50651167513763,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0.293600439334847,0,0,0,0,0,0.257575567634187,0,0,0,0,0,0,0,0,0.236482229888585,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0.426224750532694,0.290209238628584,0,0.622822248995575,0,0,0,0,0,0,0.211255286311942,0.637812899895131,0,0.112328631146495,0.150176892841506,0.16072558669708,0.570025487482497,0.19891667719909,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,2.64342657158052,0.560508562981536,3.16060901730092,0,0,0,0,0,0,0,0.111410456885174,0.294605907474837,0,0,1.28091319725675,0.650296737799391,0,0,0,0.14828656316206,0,0,0.339928028092699,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,0.383587685530591,0,0,0,1.5905718941022,0,0.945348171640679,0.886917589850256,0.790513071238134,0.916853528483988,0.728590576585084,0.370784442784429,0,0.174129737299267,0,0,0,0,2.78267370313387,0.860234595106124,0.347140501607594,0.56530794192401,0,0.825354125820202,1.8809546988313,2.84258435086262,2.49036383880697,2.67776490211736,3.22263453687318,0,9.03029612928227,1.10298924103761,0.81014194788176,5.09008451219255,2.02076435363553,3.82879033643296,1.53316637465883,0,3.29763139074733,0,0,0.436094052142534,0,0.25326102332916,0,0.286836620748814,0,0.560677600142307,0,0.24666754841716,0.622422070799533,0.808264032418128,0.817309515567294,0.151357427644931,0,0,0,0.570471821544449,0.298897361103602,0.939475989150119,1.13311061057692,0.702254033511242,0.408308342509787,0.368502951935304,0.103325781175765,0,0,0,0,0.336672227908132,0.625592599359821,0,0,0.30648779579902,0,0.340296549480063,0.358779271377724,0.213557388818567,0.635795703478686,0.300091096084402,0.309157587715317,0,0.18611685633159,0.337552664482532,0.487185025805993,0.504867548488229,0.0920498986422993,0.80823028409406,0.355009592516614,0.201504196455281,0.169560592310488,0,0.272746120590835,0,0.609868530647977,0.397589304964456,0.348581828608555,0.621966330092223,1.00928340350251,0.36497735907583,0,0.643240938192885,0,0,0,0.118306800039844,0.842923450390509,0.723033089650446,0.441175890929576,0.653638332277218,0,0.134831308160164,0.196221465125346,0,0.738155454624648,0,1.2347220339942,0,0,0.982827216677626,0,0,0.491953754172454,0.686271241194102,0.219500570817251,0,1.3068766413512,0.462942225792648,0.325808305310325,0,1.44331342025273,0.231860809950154,0.117408694235822,2.30986316417718,2.77791307545966,2.28304982681518,0,0.858486162094873,0,0.234004265139238,0,0,0.335964256397719,0.567100388969546,0.53735113621709,0.581267877027924,0,0.492663237895943,0,0,0.144119953416961,0,0.126995788584338,0.381988425558278,0,1.71072446022705,0.205654985406647,0,0.285826432630578,0.897048674762886,0,0.66004457238855,0.258543431515556,0,0.845302752556,1.06375246633948,1.04007436911366,0,0,0.266422179016099,0.285955987316295,0.542621605391443,0.823240336780769,0.977208552881205,0.710783897485092,0.791951872933429,0.301439377059586,0,0.599837947092342,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.358121926479791,0,0,0,0,1.27047312111232,2.60279707715243,0.773288812777695,0.167516265334349,0,0,0,0.414415513436035,0.36807447515742,0.500170521059677,0.271265023699736,0,0.178428988797162,0.315404830067869,0.468565659970853,0.300946099727719,0,1.03473071292505,0.664225598535437,0.921845842708516,0.260650843404249,0,0,0,0.215714200818617,0.213455115606889,0.303127571446259,0,0.30239029332968,0.248107807818777,0.153461973288062,0.841980283299221,0.51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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4086 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6767 | |||
|TSSclassifier=S | |||
|UniProt=D6RDN7 | |||
|association_with_transcript=-33bp_to_ENST00000514831_5end | |||
|description=CAGE_peak_7_at_SMAD1_5end | |||
|id=chr4:146402795..146402816,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.81e-08!24 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.22e-13;24!CL:0002138;1.45e-09;6!CL:0000115;2.24e-09;36!CL:0002543;9.79e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.46e-13,24;CL:0000115,1.13e-10,36;CL:0005020,1.16e-09,6;CL:0002138,1.16e-09,6;CL:0005022,1.16e-09,6;CL:0002078,3.20e-09,45;CL:0000071,8.36e-07,18;CL:0002546,8.36e-07,18;CL:0002543,9.32e-07,6 | |||
|ontology_enrichment_development_v019=CL:0005022;1.45e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!7.20e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;7.22e-07;8!UBERON:0004536;7.22e-07;8!UBERON:0006558;7.22e-07;8!UBERON:0002465;7.78e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,6.12e-07,8;UBERON:0004536,6.12e-07,8;UBERON:0006558,6.12e-07,8;UBERON:0002465,7.65e-07,10;UBERON:0004638,8.36e-07,18;UBERON:0001986,8.36e-07,18;UBERON:0004852,8.36e-07,18 | |||
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| |||
|short_description=p7@SMAD1 | |||
}} |
Revision as of 02:39, 13 September 2013
Short description: | p7@SMAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_SMAD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -33bp_to_ENST00000514831_5end |
EntrezGene: | SMAD1 |
HGNC: | 6767 |
UniProt: | D6RDN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.46e-13 | 24 |
endothelial cell | 1.13e-10 | 36 |
lymphangioblast | 1.16e-09 | 6 |
endothelial cell of lymphatic vessel | 1.16e-09 | 6 |
vascular lymphangioblast | 1.16e-09 | 6 |
meso-epithelial cell | 3.20e-09 | 45 |
blood vessel endothelial cell | 8.36e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.36e-07 | 18 |
vein endothelial cell | 9.32e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 6.12e-07 | 8 |
lymph vasculature | 6.12e-07 | 8 |
lymphatic part of lymphoid system | 6.12e-07 | 8 |
lymphoid system | 7.65e-07 | 10 |
blood vessel endothelium | 8.36e-07 | 18 |
endothelium | 8.36e-07 | 18 |
cardiovascular system endothelium | 8.36e-07 | 18 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.