FFCP PHASE1:Mm9::chr19:25685023..25685043,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=240590|HGNC=|UniProt=Q80WT2|association_with_transcript=0bp_to_ENSMUST00000048935,NM_177360,uc008hbk.2_5end|description=CAGE_peak_1_at_Dmrt3_5end|id=chr19:25685023..25685043,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002605,1.83e-13,2;CL:0002604,1.83e-13,2;CL:0000068,1.11e-08,3;CL:0002202,1.11e-08,3;CL:0000069,1.11e-08,3;CL:0002632,1.11e-08,3;CL:0002368,1.11e-08,3;CL:0000307,1.11e-08,3;CL:0000377,1.11e-08,3;CL:0002612,1.33e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0003126,1.11e-08,3;UBERON:0001005,1.11e-08,3;UBERON:0007196,1.11e-08,3;UBERON:0001558,1.11e-08,3;UBERON:0000011,1.21e-08,3;UBERON:0002257,1.33e-08,3;UBERON:0001954,1.54e-08,7;UBERON:0003022,1.54e-08,7;UBERON:0002421,1.54e-08,7;UBERON:0000349,1.54e-08,7;UBERON:0002600,1.54e-08,7|phase1_expression=0,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.73051321768676,11.7539905112521,0,0,0,0,0,0.380046838912748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,12.7417985985994,8.74934545834275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0.725827286159344,0.540023753326763,0.420649922702764,0,0.441737081903227,0,0.0958454710182364,0,0,0,0.153606533256243,0,0.0914876436024097,0,0,0,0,0.589257170947335,1.42371680799103,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29894624606728,1.26679932737549,0,0.11418387971906,0,0,0,0,0,0,0,0,0.494389935468748,0.144599356919912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646703978798527,0,0.175951124163949,0.219195732427575,0.278047249225598,0,0.411564272815887,0,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,2.77842453424068,0,0,0,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0.325929952884052,0,0.234690248288502,0.167506257441816,0,0.195133647857799,0,0,0,0,0.690739927463582,0,0,0,0,0,0,0,0,0,0,0,0,1.19484398976276,0.891194696329576,1.41538265394416,0.404810701674894,0.292255857911312,0,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0,0.720244376125241,0,0.643011105094777,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0.13020438484395,0.629156066554265,0,0,0.632022241256357,0.405450430580328,0.513554785824136,0.25984164595559,0,0.39736270956253,0.600977247599844,0.295379054349154,0.302899349844443,0.304827226619999,0.100826185136841,0.487289403698762,0.673482891482306,0.116876902181569,0,0.221985953374065,0.269141569828427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,0.399024873401031,2.04880326904961,0.243106717068294,0.838452650511929,0.551530525350042,0,0.412070114477788,1.28367683836726,0,0,0.188626341386076,0.280924522409647,0.192075457214608,0.402048282689293,0.476293691283074,0.115884325944855,0.192909220463705,0.412085900803307,0.588795680537589,0.342869252385415,0,0,0.145346416632329,0.0941093804153306,0.338458431566706,0,0.263069711437843,0.135804113845862,0.561142271657738,0.118635018124174,0.197008964751127,0,0.309873682371932,0.771626443924566,1.24905288968973,0.233931608445408,0.429742108096597,0.191288332068843,0,0|short_description=p1@Dmrt3}} | ||
|EntrezGene=240590 | |||
|HGNC= | |||
|UniProt=Q80WT2 | |||
|association_with_transcript=0bp_to_ENSMUST00000048935,NM_177360,uc008hbk.2_5end | |||
|description=CAGE_peak_1_at_Dmrt3_5end | |||
|id=chr19:25685023..25685043,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.83e-13,2;CL:0002604,1.83e-13,2;CL:0000068,1.11e-08,3;CL:0002202,1.11e-08,3;CL:0000069,1.11e-08,3;CL:0002632,1.11e-08,3;CL:0002368,1.11e-08,3;CL:0000307,1.11e-08,3;CL:0000377,1.11e-08,3;CL:0002612,1.33e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,1.11e-08,3;UBERON:0001005,1.11e-08,3;UBERON:0007196,1.11e-08,3;UBERON:0001558,1.11e-08,3;UBERON:0000011,1.21e-08,3;UBERON:0002257,1.33e-08,3;UBERON:0001954,1.54e-08,7;UBERON:0003022,1.54e-08,7;UBERON:0002421,1.54e-08,7;UBERON:0000349,1.54e-08,7;UBERON:0002600,1.54e-08,7 | |||
|phase1_expression=0,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.73051321768676,11.7539905112521,0,0,0,0,0,0.380046838912748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,12.7417985985994,8.74934545834275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0.725827286159344,0.540023753326763,0.420649922702764,0,0.441737081903227,0,0.0958454710182364,0,0,0,0.153606533256243,0,0.0914876436024097,0,0,0,0,0.589257170947335,1.42371680799103,1.1183966749518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29894624606728,1.26679932737549,0,0.11418387971906,0,0,0,0,0,0,0,0,0.494389935468748,0.144599356919912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646703978798527,0,0.175951124163949,0.219195732427575,0.278047249225598,0,0.411564272815887,0,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0,0,0,0,0,0,0,0,0,0.420579897128254,2.77842453424068,0,0,0,0.232236671860439,0.38660238396628,0.201683524623343,0.22237804384487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0.325929952884052,0,0.234690248288502,0.167506257441816,0,0.195133647857799,0,0,0,0,0.690739927463582,0,0,0,0,0,0,0,0,0,0,0,0,1.19484398976276,0.891194696329576,1.41538265394416,0.404810701674894,0.292255857911312,0,0,0,0,0,0,0,0,0,0.188605079755898,0,0,0,0,0,0.316036757935816,0,0,0,0.720244376125241,0,0.643011105094777,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,0.556275906031529,0,0,0,0,0,0,0,0,0,0,0.158167996790568,0.203319467126849,0.108005340821801,0,0,0,0,0,0,0,0,0.149516546043979,0,0,0,0,0,0.13020438484395,0.629156066554265,0,0,0.632022241256357,0.405450430580328,0.513554785824136,0.25984164595559,0,0.39736270956253,0.600977247599844,0.295379054349154,0.302899349844443,0.304827226619999,0.100826185136841,0.487289403698762,0.673482891482306,0.116876902181569,0,0.221985953374065,0.269141569828427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14166082342594,0.399024873401031,2.04880326904961,0.243106717068294,0.838452650511929,0.551530525350042,0,0.412070114477788,1.28367683836726,0,0,0.188626341386076,0.280924522409647,0.192075457214608,0.402048282689293,0.476293691283074,0.115884325944855,0.192909220463705,0.412085900803307,0.588795680537589,0.342869252385415,0,0,0.145346416632329,0.0941093804153306,0.338458431566706,0,0.263069711437843,0.135804113845862,0.561142271657738,0.118635018124174,0.197008964751127,0,0.309873682371932,0.771626443924566,1.24905288968973,0.233931608445408,0.429742108096597,0.191288332068843,0,0 | |||
|short_description=p1@Dmrt3 | |||
}} |
Revision as of 17:16, 13 September 2013
Short description: | p1@Dmrt3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dmrt3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000048935, NM_177360, uc008hbk.2_5end |
EntrezGene: | Dmrt3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.83e-13 | 2 |
astrocyte of the hippocampus | 1.83e-13 | 2 |
duct epithelial cell | 1.11e-08 | 3 |
epithelial cell of tracheobronchial tree | 1.11e-08 | 3 |
branched duct epithelial cell | 1.11e-08 | 3 |
epithelial cell of lower respiratory tract | 1.11e-08 | 3 |
respiratory epithelial cell | 1.11e-08 | 3 |
tracheal epithelial cell | 1.11e-08 | 3 |
tracheoblast | 1.11e-08 | 3 |
neuron of the ventral spinal cord | 1.33e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
trachea | 1.11e-08 | 3 |
respiratory airway | 1.11e-08 | 3 |
tracheobronchial tree | 1.11e-08 | 3 |
lower respiratory tract | 1.11e-08 | 3 |
parasympathetic nervous system | 1.21e-08 | 3 |
ventral horn of spinal cord | 1.33e-08 | 3 |
Ammon's horn | 1.54e-08 | 7 |
lobe parts of cerebral cortex | 1.54e-08 | 7 |
hippocampal formation | 1.54e-08 | 7 |
limbic system | 1.54e-08 | 7 |
limbic lobe | 1.54e-08 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.