FFCP PHASE1:Mm9::chr19:28754600..28754612,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=226075|HGNC=|UniProt=Q6XP49,Q0GE24|association_with_transcript=-33bp_to_ENSMUST00000112612,ENSMUST00000162022,NM_175459,uc008hci.1,uc008hcj.1_5end|description=CAGE_peak_2_at_Glis3_5end|id=chr19:28754600..28754612,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002453,3.91e-08,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001008!3.15e-09!17;UBERON:0006554!1.01e-08!16;UBERON:0002113!4.91e-08!14;UBERON:0003918!4.91e-08!14;UBERON:0005095!4.91e-08!14;UBERON:0007687!4.91e-08!14|ontology_enrichment_uberon_v019_2=UBERON:0002113,3.61e-11,14;UBERON:0003918,3.61e-11,14;UBERON:0011143,3.61e-11,14;UBERON:0005095,3.61e-11,14;UBERON:0007687,3.61e-11,14;UBERON:0001008,6.26e-11,19;UBERON:0006554,3.32e-10,18;UBERON:0002100,4.01e-08,90;UBERON:0000489,4.65e-07,21|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,1.99865857089398,0,0,0,0.137114433605739,0.42438965179803,1.36069264241712,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0.577703239502549,0,0,0,0,0.523523743973798,0,0.683045484958446,0,4.40638862914521,1.72340783073175,7.34187008646726,3.12956537739216,3.48840250208714,6.37089929929968,8.1660557611199,2.93971485413261,5.75010257459886,0,0,0,3.34437266846731,0.85960031981627,0,0.606949382578793,0.528990979272033,1.26766280701236,1.0165335962074,0,0.449949858640699,0,0,3.59520132622086,3.45796474789399,0,0.135005938331691,0,0,0.662605622854841,0,0,0,1.10115880999389,0.766124028511126,0.46081959976873,0.791317726381163,0.457438218012048,0,0,0,0.916789486660861,0.883885756421003,0.854230084794618,0.559198337475902,0.605809546665472,0.151143120213571,12.4641730141721,0,0,0,0,0,0.702222100658759,3.40860645156115,1.81850203222008,3.18005617059306,0,11.5493829672886,17.8363667794652,7.11066703153331,1.29894624606728,1.77351905832569,1.51657333504435,2.16949371466214,0.517875767294343,0.593768556259299,0.173485326766136,0.608930956624282,0.230615497256059,0.904335843315735,0.587943535678524,0.251333182659351,0.247194967734374,0.144599356919912,0,0.808834249737046,0.883366073841574,1.45462575940567,0,0.878342391034642,0.209446706813455,0.255457055208591,0.479260498023681,0.599902730993408,0.762421362438388,0.898743836428936,1.37250180845588,0.251308704225729,0.347648640384553,0.767146371990992,1.0389402227978,0.973447578406546,1.2220723662038,1.36847667671102,2.52722758433675,0.420883711772948,0.520481771850815,0.229902104433473,0.540186389416048,0.452114453507145,0.204109497453984,0.2562274405697,0.655912071918102,1.03481348295606,0.431135985865684,0.945530400839096,1.93546236580344,0.876782929710299,0.278047249225598,1.0447564995665,0.61734640922383,0.995171334092466,0.702213187313235,0.772043721344145,1.42081749697796,0.621377317606506,0,0.36012412292203,0.473489471170421,0.393528463494808,0.154267112887378,0.465067889500816,0.268273401399619,0.350296027101508,0.329119699826961,0.32833492815819,0.162137619091711,0,0,0.671032093801859,1.26173969138476,0.92614151141356,0,0,0.426576501070468,0.232236671860439,0.515469845288373,0.605050573870028,0.444756087689741,0.951128130562796,1.42358718463353,0.494096864172033,1.75934646160189,0.795825888164603,0,0.898819408654221,0.864552199498777,0.597423819763102,1.70701110857774,1.82797620175566,1.1270773567308,3.86937522906097,3.68509725618489,5.6810014111158,8.66340558602325,10.0374900626129,7.53593893638599,8.14421281883883,0,0.166845105716094,0,0,0,0.241177159752417,0.50925170356284,0,0.162135226775035,0.274561413188081,0,0,1.24815069245824,0.757736633841335,0,0,1.10851914099963,0.189491411770485,0.977789858652155,0.848725428875941,1.64283173801951,2.34508760418542,3.80869825417622,2.34160377429359,1.41871629695572,1.7717175171902,1.59454768657487,0.983179888294428,0.690739927463582,0.867894351489069,0,0,0,1.10374698521893,0.642202359951168,0.234423373184406,2.13115428989678,0,0,0,0.861693590931196,0.716906393857656,1.11399337041197,2.26461224631066,0.404810701674894,0.292255857911312,0.790575555893047,0.642642632843614,1.27746076687442,1.95872164033981,3.74640006513225,4.12425307431339,0,2.6705869977048,1.81394134178851,0.377210159511796,1.18120757152309,3.3817866273832,4.39328098385976,4.36240475373007,2.49548164869305,2.21225730555071,2.10837217149998,2.06271086496374,0.340439605753788,1.98067203434441,1.68166288917581,3.42939256050548,0.886701168211368,3.92411398724555,3.1264313914403,3.95804433848979,0,0.847328283455281,1.32317038832977,0,1.13025098687134,0.72375509913787,0.596861720015682,0.328281799490123,1.45740418314925,0.556275906031529,0.512612642393558,1.03193433981611,1.29636169158798,0.941842285023455,0.27338845544205,0.915112692826091,1.35982743995084,1.53946597556024,1.65839968565309,0,0,1.82987520414164,0.756037385752609,0.836353184057875,0.87345025498471,0.134864346384821,1.23980183588004,0,0.518459893167171,0,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0,0.469428954583016,1.43224823328345,0.209718688851422,0,1.15212002503146,0,0.202725215290164,0.205421914329655,0,0,0.198681354781265,0.240390899039938,0,0.100966449948148,0,0,0.0974578807397524,0.192423683280659,0.116876902181569,0.680191150845634,0,0.0897138566094757,0,3.28422309854724,2.25218970541418,4.76194223094889,3.21552568618599,21.0660283694853,0.564751842617067,0.460325236507177,0.572895513439397,0.515559547031063,0,3.0215755895588,0,0.45032120322422,0.453142408984205,1.55328093525546,0.103787347584177,1.59609949360412,0.853668028770671,1.45864030240976,0.209613162627982,0.183843508450014,0,1.64828045791115,1.60459604795908,1.01078884705519,0.760437899670719,0.377252682772152,0.561849044819294,0.512201219238954,0.689225627467359,0.952587382566147,1.15884325944855,0.38581844092741,0.824171801606613,0.441596760403192,0.342869252385415,0.887379030796687,1.1921809497366,0.872078499793971,0.941093804153306,1.52306294205018,1.28049581010941,0.526139422875686,0.543216455383447,1.68342681497322,1.18635018124174,0.886540341380071,0.818462086339379,0.464810523557898,1.15743966588685,1.49886346762768,0.935726433781634,1.71896843238639,0.765153328275374,0.441182838239031,0.927471342481686|short_description=p2@Glis3}} | ||
|EntrezGene=226075 | |||
|HGNC= | |||
|UniProt=Q6XP49,Q0GE24 | |||
|association_with_transcript=-33bp_to_ENSMUST00000112612,ENSMUST00000162022,NM_175459,uc008hci.1,uc008hcj.1_5end | |||
|description=CAGE_peak_2_at_Glis3_5end | |||
|id=chr19:28754600..28754612,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,3.91e-08,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001008!3.15e-09!17;UBERON:0006554!1.01e-08!16;UBERON:0002113!4.91e-08!14;UBERON:0003918!4.91e-08!14;UBERON:0005095!4.91e-08!14;UBERON:0007687!4.91e-08!14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,3.61e-11,14;UBERON:0003918,3.61e-11,14;UBERON:0011143,3.61e-11,14;UBERON:0005095,3.61e-11,14;UBERON:0007687,3.61e-11,14;UBERON:0001008,6.26e-11,19;UBERON:0006554,3.32e-10,18;UBERON:0002100,4.01e-08,90;UBERON:0000489,4.65e-07,21 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,1.99865857089398,0,0,0,0.137114433605739,0.42438965179803,1.36069264241712,0,0,0,0,0,0.430761996159075,0,0,0,0,0,0,0,0.577703239502549,0,0,0,0,0.523523743973798,0,0.683045484958446,0,4.40638862914521,1.72340783073175,7.34187008646726,3.12956537739216,3.48840250208714,6.37089929929968,8.1660557611199,2.93971485413261,5.75010257459886,0,0,0,3.34437266846731,0.85960031981627,0,0.606949382578793,0.528990979272033,1.26766280701236,1.0165335962074,0,0.449949858640699,0,0,3.59520132622086,3.45796474789399,0,0.135005938331691,0,0,0.662605622854841,0,0,0,1.10115880999389,0.766124028511126,0.46081959976873,0.791317726381163,0.457438218012048,0,0,0,0.916789486660861,0.883885756421003,0.854230084794618,0.559198337475902,0.605809546665472,0.151143120213571,12.4641730141721,0,0,0,0,0,0.702222100658759,3.40860645156115,1.81850203222008,3.18005617059306,0,11.5493829672886,17.8363667794652,7.11066703153331,1.29894624606728,1.77351905832569,1.51657333504435,2.16949371466214,0.517875767294343,0.593768556259299,0.173485326766136,0.608930956624282,0.230615497256059,0.904335843315735,0.587943535678524,0.251333182659351,0.247194967734374,0.144599356919912,0,0.808834249737046,0.883366073841574,1.45462575940567,0,0.878342391034642,0.209446706813455,0.255457055208591,0.479260498023681,0.599902730993408,0.762421362438388,0.898743836428936,1.37250180845588,0.251308704225729,0.347648640384553,0.767146371990992,1.0389402227978,0.973447578406546,1.2220723662038,1.36847667671102,2.52722758433675,0.420883711772948,0.520481771850815,0.229902104433473,0.540186389416048,0.452114453507145,0.204109497453984,0.2562274405697,0.655912071918102,1.03481348295606,0.431135985865684,0.945530400839096,1.93546236580344,0.876782929710299,0.278047249225598,1.0447564995665,0.61734640922383,0.995171334092466,0.702213187313235,0.772043721344145,1.42081749697796,0.621377317606506,0,0.36012412292203,0.473489471170421,0.393528463494808,0.154267112887378,0.465067889500816,0.268273401399619,0.350296027101508,0.329119699826961,0.32833492815819,0.162137619091711,0,0,0.671032093801859,1.26173969138476,0.92614151141356,0,0,0.426576501070468,0.232236671860439,0.515469845288373,0.605050573870028,0.444756087689741,0.951128130562796,1.42358718463353,0.494096864172033,1.75934646160189,0.795825888164603,0,0.898819408654221,0.864552199498777,0.597423819763102,1.70701110857774,1.82797620175566,1.1270773567308,3.86937522906097,3.68509725618489,5.6810014111158,8.66340558602325,10.0374900626129,7.53593893638599,8.14421281883883,0,0.166845105716094,0,0,0,0.241177159752417,0.50925170356284,0,0.162135226775035,0.274561413188081,0,0,1.24815069245824,0.757736633841335,0,0,1.10851914099963,0.189491411770485,0.977789858652155,0.848725428875941,1.64283173801951,2.34508760418542,3.80869825417622,2.34160377429359,1.41871629695572,1.7717175171902,1.59454768657487,0.983179888294428,0.690739927463582,0.867894351489069,0,0,0,1.10374698521893,0.642202359951168,0.234423373184406,2.13115428989678,0,0,0,0.861693590931196,0.716906393857656,1.11399337041197,2.26461224631066,0.404810701674894,0.292255857911312,0.790575555893047,0.642642632843614,1.27746076687442,1.95872164033981,3.74640006513225,4.12425307431339,0,2.6705869977048,1.81394134178851,0.377210159511796,1.18120757152309,3.3817866273832,4.39328098385976,4.36240475373007,2.49548164869305,2.21225730555071,2.10837217149998,2.06271086496374,0.340439605753788,1.98067203434441,1.68166288917581,3.42939256050548,0.886701168211368,3.92411398724555,3.1264313914403,3.95804433848979,0,0.847328283455281,1.32317038832977,0,1.13025098687134,0.72375509913787,0.596861720015682,0.328281799490123,1.45740418314925,0.556275906031529,0.512612642393558,1.03193433981611,1.29636169158798,0.941842285023455,0.27338845544205,0.915112692826091,1.35982743995084,1.53946597556024,1.65839968565309,0,0,1.82987520414164,0.756037385752609,0.836353184057875,0.87345025498471,0.134864346384821,1.23980183588004,0,0.518459893167171,0,0,0.149516546043979,0.165458490457098,0.194451188344048,0.129159823477731,0,0.469428954583016,1.43224823328345,0.209718688851422,0,1.15212002503146,0,0.202725215290164,0.205421914329655,0,0,0.198681354781265,0.240390899039938,0,0.100966449948148,0,0,0.0974578807397524,0.192423683280659,0.116876902181569,0.680191150845634,0,0.0897138566094757,0,3.28422309854724,2.25218970541418,4.76194223094889,3.21552568618599,21.0660283694853,0.564751842617067,0.460325236507177,0.572895513439397,0.515559547031063,0,3.0215755895588,0,0.45032120322422,0.453142408984205,1.55328093525546,0.103787347584177,1.59609949360412,0.853668028770671,1.45864030240976,0.209613162627982,0.183843508450014,0,1.64828045791115,1.60459604795908,1.01078884705519,0.760437899670719,0.377252682772152,0.561849044819294,0.512201219238954,0.689225627467359,0.952587382566147,1.15884325944855,0.38581844092741,0.824171801606613,0.441596760403192,0.342869252385415,0.887379030796687,1.1921809497366,0.872078499793971,0.941093804153306,1.52306294205018,1.28049581010941,0.526139422875686,0.543216455383447,1.68342681497322,1.18635018124174,0.886540341380071,0.818462086339379,0.464810523557898,1.15743966588685,1.49886346762768,0.935726433781634,1.71896843238639,0.765153328275374,0.441182838239031,0.927471342481686 | |||
|short_description=p2@Glis3 | |||
}} | |||
Revision as of 17:18, 13 September 2013
| Short description: | p2@Glis3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Glis3_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -33bp_to_ENSMUST00000112612, ENSMUST00000162022, NM_175459, uc008hci.1, uc008hcj.1_5end |
| EntrezGene: | Glis3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| oligodendrocyte precursor cell | 3.91e-08 | 8 |
| Ontology term | p-value | n |
|---|---|---|
| kidney | 3.61e-11 | 14 |
| kidney mesenchyme | 3.61e-11 | 14 |
| upper urinary tract | 3.61e-11 | 14 |
| kidney rudiment | 3.61e-11 | 14 |
| kidney field | 3.61e-11 | 14 |
| renal system | 6.26e-11 | 19 |
| urinary system structure | 3.32e-10 | 18 |
| trunk | 4.01e-08 | 90 |
| cavitated compound organ | 4.65e-07 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
