FFCP PHASE1:Hg19::chr1:112084630..112084639,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5906 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9855 | |||
|TSSclassifier=not | |||
|UniProt=P62834 | |||
|association_with_transcript=-200bp_to_ENST00000356415_5end | |||
|description=CAGE_peak_8_at_RAP1A_5end | |||
|id=chr1:112084630..112084639,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.35e-16!43;CL:0002621!6.63e-16!3;CL:0000223!5.97e-13!59;CL:0000066!1.27e-11!254;CL:1000415!6.05e-11!2;CL:0002251!2.11e-10!21;CL:0002166!1.59e-07!3;CL:0002541!3.11e-07!3;CL:0002231!4.40e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000415;5.04e-34;2!CL:0002166;3.27e-23;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000415,5.04e-34,2;CL:0002166,4.09e-23,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!9.97e-11!106;DOID:0050687!6.13e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:4556;3.27e-23;3!DOID:3908;1.60e-14;5!DOID:3905;1.12e-08;9 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,2.62e-23,3;DOID:3908,1.40e-14,5;DOID:3905,1.04e-08,9 | |||
|ontology_enrichment_uberon=UBERON:0001949!6.63e-16!3;UBERON:0003729!5.39e-09!5;UBERON:0004119!1.05e-07!169;UBERON:0000925!1.05e-07!169;UBERON:0006595!1.05e-07!169;UBERON:0002110!1.44e-07!3;UBERON:0006242!1.44e-07!3;UBERON:0000161!1.56e-07!35;UBERON:0000476!3.11e-07!3;UBERON:0000920!3.11e-07!3;UBERON:0001007!7.17e-07!155;UBERON:0001555!7.17e-07!155;UBERON:0007026!7.17e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002110;3.27e-23;3!UBERON:0001708;8.69e-18;4!UBERON:0008895;8.69e-18;4!UBERON:0011159;1.60e-14;5!UBERON:0002294;8.99e-11;7!UBERON:0001173;8.99e-11;7!UBERON:0011137;2.47e-07;11!UBERON:0010323;2.47e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002110,3.27e-23,3;UBERON:0006242,3.27e-23,3;UBERON:0001708,1.03e-17,4;UBERON:0008895,1.03e-17,4;UBERON:0011159,1.83e-14,5;UBERON:0010188,2.74e-12,6;UBERON:0002539,2.74e-12,6;UBERON:0008816,2.74e-12,6;UBERON:0002294,1.12e-08,9;UBERON:0001173,1.12e-08,9;UBERON:0004912,1.12e-08,9;UBERON:0010323,2.63e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220587945464788,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34385702559088,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852408440419239,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23056390438806,0,0,0.31900115973192,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0.326465616318295,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.195551382734803,1.52301758477914,0,0,0,0,0,0,0.372757606696298,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72723677587501,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p8@RAP1A | |||
}} |
Revision as of 20:10, 10 January 2014
Short description: | p8@RAP1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RAP1A_5end |
Coexpression cluster: | NA |
Association with transcript: | -200bp_to_ENST00000356415_5end |
EntrezGene: | RAP1A |
HGNC: | 9855 |
UniProt: | P62834 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 5.04e-34 | 2 |
epithelial cell of Malassez | 4.09e-23 | 3 |
Ontology term | p-value | n |
---|---|---|
gallbladder | 3.27e-23 | 3 |
gall bladder primordium | 3.27e-23 | 3 |
jaw skeleton | 1.03e-17 | 4 |
splanchnocranium | 1.03e-17 | 4 |
primary subdivision of cranial skeletal system | 1.83e-14 | 5 |
protuberance | 2.74e-12 | 6 |
pharyngeal arch | 2.74e-12 | 6 |
embryonic head | 2.74e-12 | 6 |
biliary system | 1.12e-08 | 9 |
biliary tree | 1.12e-08 | 9 |
biliary bud | 1.12e-08 | 9 |
cranial skeletal system | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 2.62e-23 | 3 |
non-small cell lung carcinoma | 1.40e-14 | 5 |
lung carcinoma | 1.04e-08 | 9 |