FFCP PHASE1:Hg19::chr15:67459116..67459123,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport= | |||
|DPIdataset=robust | |||
|EntrezGene=4088 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6769 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=247bp_to_ENST00000558428_5end | |||
|description=CAGE_peak_23_at_SMAD3_5end | |||
|id=chr15:67459116..67459123,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002596;2.10e-13;2!CL:0002144;1.62e-09;3!CL:0002622;3.11e-09;3!CL:0002591;5.57e-08;1!CL:0000511;1.53e-07;1!CL:0002625;1.53e-07;1!CL:0002174;1.53e-07;1!CL:0000216;1.53e-07;1!CL:0000501;1.53e-07;1!CL:0000499;1.83e-07;28!CL:0000327;8.69e-07;15!CL:0000153;9.72e-07;9!CL:0000447;9.72e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002596,1.74e-13,2;CL:0002144,1.73e-09,3;CL:0002622,2.64e-09,3;CL:0002591,6.80e-08,1;CL:0000511,1.07e-07,1;CL:0002625,1.07e-07,1;CL:0000216,1.07e-07,1;CL:0002174,1.48e-07,1;CL:0000501,1.48e-07,1;CL:0000499,1.60e-07,28;CL:0000327,7.80e-07,15;CL:0000153,9.65e-07,9;CL:0000447,9.65e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0005396;2.10e-13;2!UBERON:0010523;1.62e-09;3!UBERON:0001915;1.62e-09;3!UBERON:0001982;1.62e-09;3!UBERON:0007029;5.57e-08;1!UBERON:0001136;1.53e-07;1!UBERON:0001343;1.53e-07;1!UBERON:0004910;1.53e-07;1!UBERON:0004813;1.53e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005396,1.74e-13,2;UBERON:0010523,1.73e-09,3;UBERON:0001915,1.73e-09,3;UBERON:0001982,1.73e-09,3;UBERON:0007029,5.58e-08,1;UBERON:0001136,1.07e-07,1;UBERON:0001343,1.07e-07,1;UBERON:0004910,1.07e-07,1;UBERON:0005154,1.07e-07,1;UBERON:0005295,1.07e-07,1;UBERON:0004813,1.07e-07,1;UBERON:0005297,1.07e-07,1;UBERON:0005294,1.07e-07,1;UBERON:0010141,1.07e-07,1;UBERON:0005891,1.07e-07,1;UBERON:0004122,6.99e-07,15 | |||
|phase1_expression=0,0.642301571672949,0.140954404095971,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.247532705920093,1.32558950291166,0,0,0.730310090387373,0,0.369363174230364,0.408001382488506,0,0,0,0.125542639594803,0.0764134057479513,0,0.0787107813136792,0,0,0.309632246632152,0,0,0.369754010166788,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0.145398238779565,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0.47296445977717,0.689491361473237,0,0,0.564727018627814,0.818718450173537,0,0.306083892370903,0,0,0.989553900560148,0.797854630486527,0.426224750532694,0.290209238628584,0,0,0,0.521482918420201,0,0.605399502633369,0,0.316462387440884,0,0,0,0,0,0.64290234678832,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0.263384084775077,0,0,0,0,0,0,0,0.222820913770347,0,0.221533894583621,0,0.128091319725675,0.130059347559878,0.493313713811028,0,0.579606171470105,0,0,0,0.226618685395132,0.383220493601921,0.68725489096526,0.253019692019503,0,0,0,0.150575119077773,0,0,0,0,0,0.534880391567015,0,0,0,0.255725123687061,1.44575660953827,1.00267582127178,0.869079113764942,0,0,0.189069634328136,0,0.263504357079378,0.0654895377488563,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,1.25849830862972,0.825354125820202,0.208994966536811,0,0.35576626268671,0,2.81980521976403,0,1.22031028774085,0,0,0.535798369704479,0,0,0,0,0.366403487860815,0,0,0,0,0.379891534993739,0.132409180813219,0.573673241497627,0.354668382198357,0.560677600142307,0,0.74000264525148,0.311211035399766,0,0.163461903113459,0,0,0,0.936480230490962,0,0,0,0,0,0,0,0,2.37600571456411,0.989067717114227,0.910161361938026,0,0,0.125118519871964,0,0.438977620880838,0.30648779579902,0.751190294532984,0,0,0,0.211931901159562,0.300091096084402,0.206105058476878,0,0.18611685633159,0,0.194874010322397,0,0.276149695926898,0.484938170456436,0.355009592516614,0.10075209822764,0.339121184620975,0,1.09098448236334,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0,0,0,0,5.60967095213783,0,0,1.26755034821831,0,0,0,0.368965315629341,0,0.109750285408626,0,0.201057944823262,0.370353780634118,0,1.03993478527958,0,0,0,0.144366447761074,0,0.190254152234598,0.790204397959275,0,0,0,0,0,0.16798212819886,0.425325291727159,0,0.290633938513962,0,0,0.088048434013226,0.829312462163088,0.288239906833923,0.25248486685276,0,0,0,0,0,0,0,0.224262168690721,1.74384027533312,0,0.258543431515556,0,0,0.26593811658487,1.04007436911366,0,0,0.799266537048298,0.142977993658148,0,0,0,0,0.791951872933429,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0,0.112085143993527,0,0,0.385029108839245,0.508189248444927,0,0,0,0,0,2.99161459204025,0,0.49076596687656,0,0,0,0.356857977594324,0,0,0,2.27407504055985,0,0,0,0.955719759148911,0,0,0.82707210449155,0.215714200818617,0.106727557803444,0.606255142892519,0,0,0,0,0.280660094433074,0,0.511707249066704,0,0,0.616838775210622,1.06537035187876,0.574890092096664,0,0.348631135379878,0.362578348774867,1.60405176242628,0.552485933615378,0.34444334449382,1.0925470080403,1.83574180943194,0.902399225814824,0.0770153371044148,0,0,0.316654886678627,0,0.170093705276516,0,0,0.270946437543853,0,0.509752546090077,0,0.447749509444357,0,0,0,0.328014645699706,0,0.721287081534056,0.0915694648183434,0,0,0.650060246036521,1.6068392984416,0.773365746336976,0.154048617114644,0.460511024178389,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.178064071293475,0.165284915360978,0.192190067365106,0,0.10115778085555,0,0.62962469366128,0,0.308033580176089,0.532306030317022,0,0.37064843820784,0.286249773483982,0,0.316379424718726,0,0.255897791311334,0,1.27281299170375,1.56989728039846,0.179872457583315,0,0.235624804691373,0.202182481573316,0,0,0,0.487426979262569,0,0.409499734223957,0.565621727814851,2.26016233240486,0.551365343546124,0.66343897524122,2.63070531152258,0.578775534266688,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0.196498082026242,0.35667105148125,0.354761064070598,0.633322905892992,1.97576935775941,0,0,0.0962221127255121,0,0,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0.245040215981032,0,0,0,0,0,0,0.211673582723883,0,0,0,0.313359791546046,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,0.18714054040822,1.02555725490326,0,0,0,0.71623345421307,0.890894042497916,0,1.9882952955326,0,0.779160935160341,0,0,0.19924798825107,0,0,0,0.123084805461069,0,0.449341755736634,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,1.99613798001194,0,0,0.724999575434793,0.1137934482855,0.254253650292766,0,0,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0.278847488557207,0.307801034015188,0.113942055847001,0,0.538545866458633,0,0,0.366390373607449,0,0,0,0,0,0.19606253431774,0.167821586975843,0,0,0.421996129056054,0.163232808159148,0,0,0,0.442287822516696,0,0,0.123563938946503,0,0.13480226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| |||
|short_description=p23@SMAD3 | |||
}} |
Revision as of 00:13, 12 January 2014
Short description: | p23@SMAD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_23_at_SMAD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 247bp_to_ENST00000558428_5end |
EntrezGene: | SMAD3 |
HGNC: | 6769 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the carotid artery | 1.74e-13 | 2 |
capillary endothelial cell | 1.73e-09 | 3 |
prostate stromal cell | 2.64e-09 | 3 |
smooth muscle cell of the pulmonary artery | 6.80e-08 | 1 |
androgen binding protein secreting cell | 1.07e-07 | 1 |
seminiferous tubule epithelial cell | 1.07e-07 | 1 |
Sertoli cell | 1.07e-07 | 1 |
follicular cell of ovary | 1.48e-07 | 1 |
granulosa cell | 1.48e-07 | 1 |
stromal cell | 1.60e-07 | 28 |
extracellular matrix secreting cell | 7.80e-07 | 15 |
GAG secreting cell | 9.65e-07 | 9 |
carbohydrate secreting cell | 9.65e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
carotid artery segment | 1.74e-13 | 2 |
microcirculatory vessel | 1.73e-09 | 3 |
endothelium of capillary | 1.73e-09 | 3 |
capillary | 1.73e-09 | 3 |
surface | 5.58e-08 | 1 |
mesothelium | 1.07e-07 | 1 |
seminiferous tubule of testis | 1.07e-07 | 1 |
epithelium of male gonad | 1.07e-07 | 1 |
epithelial cord | 1.07e-07 | 1 |
sex cord | 1.07e-07 | 1 |
seminiferous tubule epithelium | 1.07e-07 | 1 |
testis sex cord | 1.07e-07 | 1 |
genital ridge | 1.07e-07 | 1 |
primitive sex cord of indifferent gonad | 1.07e-07 | 1 |
coelomic epithelium | 1.07e-07 | 1 |
genitourinary system | 6.99e-07 | 15 |