FFCP PHASE1:Hg19::chr17:39023189..39023197,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3859 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6414 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=242bp_to_BC156641_5end | |||
|description=CAGE_peak_2_at_KRT12_5end | |||
|id=chr17:39023189..39023197,- | |||
|ontology_enrichment_celltype=CL:0000575!1.56e-34!2;CL:0002573!9.64e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0000575;1.75e-130;2!CL:0002159;7.13e-20;14!CL:0000333;1.40e-14;5!CL:0002077;1.30e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000575,1.75e-130,2;CL:0002159,7.13e-20,14;CL:0000221,4.40e-09,72;CL:0002077,7.08e-09,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1036!3.73e-19!8;DOID:3193!7.98e-10!2;DOID:962!7.98e-10!2;DOID:8692!7.80e-09!31;DOID:1240!4.50e-07!39;DOID:1192!5.80e-07!3 | |||
|ontology_enrichment_disease_v019=DOID:3193;3.61e-34;2!DOID:962;3.61e-34;2!DOID:1192;2.62e-23;3!DOID:169;2.19e-12;6!DOID:171;5.73e-08;10!DOID:3093;7.48e-07;11 | |||
|ontology_enrichment_disease_v019_2=DOID:3193,3.61e-34,2;DOID:962,3.61e-34,2;DOID:1192,2.62e-23,3;DOID:169,2.19e-12,6;DOID:171,5.73e-08,10;DOID:3093,7.48e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000964!8.04e-18!4;UBERON:0004348!8.04e-18!4;UBERON:0005427!8.04e-18!4;UBERON:0003714!7.98e-10!2;UBERON:0001870!2.02e-09!2;UBERON:0000010!2.37e-08!8;UBERON:0000970!3.67e-08!20;UBERON:0002104!8.47e-08!21;UBERON:0000020!3.64e-07!23;UBERON:0001032!6.89e-07!24;UBERON:0004456!6.89e-07!24 | |||
|ontology_enrichment_uberon_v019=UBERON:0000964;4.67e-66;4!UBERON:0010409;4.67e-66;4!UBERON:0003714;3.61e-34;2!UBERON:0010313;2.72e-27;10!UBERON:0001801;7.13e-20;14!UBERON:0000019;5.66e-15;19!UBERON:0000047;5.66e-15;19!UBERON:0004088;5.66e-15;19!UBERON:0010230;5.66e-15;19!UBERON:0000013;1.40e-14;5!UBERON:0002410;1.40e-14;5!UBERON:0000970;2.76e-14;20!UBERON:0002104;1.16e-13;21!UBERON:0001456;1.16e-13;21!UBERON:0000020;1.41e-12;23!UBERON:0001032;4.20e-12;24!UBERON:0004456;4.20e-12;24!UBERON:0000010;1.04e-08;8!UBERON:0000033;2.58e-07;50!UBERON:0003102;2.58e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000964,4.67e-66,4;UBERON:0010409,4.67e-66,4;UBERON:0004348,4.67e-66,4;UBERON:0005427,4.67e-66,4;UBERON:0003714,3.61e-34,2;UBERON:0010313,2.72e-27,10;UBERON:0002342,2.72e-27,10;UBERON:0005062,2.72e-27,10;UBERON:0001801,7.13e-20,14;UBERON:0000013,1.40e-14,5;UBERON:0002410,1.40e-14,5;UBERON:0000019,2.76e-14,20;UBERON:0000047,2.76e-14,20;UBERON:0010312,2.76e-14,20;UBERON:0004088,2.76e-14,20;UBERON:0010230,2.76e-14,20;UBERON:0003072,2.76e-14,20;UBERON:0004128,2.76e-14,20;UBERON:0003071,2.76e-14,20;UBERON:0000970,1.16e-13,21;UBERON:0002104,1.16e-13,21;UBERON:0001456,4.26e-13,22;UBERON:0000020,4.20e-12,24;UBERON:0001032,4.20e-12,24;UBERON:0004456,4.20e-12,24;UBERON:0005085,1.25e-09,31;UBERON:0000010,1.04e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.4716774956061,4.82019775619758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19606253431774,0.671286347903371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0556085235184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852134047591577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@KRT12 | |||
}} |
Revision as of 15:14, 20 January 2014
Short description: | p2@KRT12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_KRT12_5end |
Coexpression cluster: | NA |
Association with transcript: | 242bp_to_BC156641_5end |
EntrezGene: | KRT12 |
HGNC: | 6414 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
corneal epithelial cell | 1.75e-130 | 2 |
general ecto-epithelial cell | 7.13e-20 | 14 |
ectodermal cell | 4.40e-09 | 72 |
ecto-epithelial cell | 7.08e-09 | 34 |
Ontology term | p-value | n |
---|---|---|
cornea | 4.67e-66 | 4 |
eye surface | 4.67e-66 | 4 |
optic eminence | 4.67e-66 | 4 |
corneal primordium | 4.67e-66 | 4 |
neural tissue | 3.61e-34 | 2 |
neural crest-derived structure | 2.72e-27 | 10 |
neural crest | 2.72e-27 | 10 |
neural fold | 2.72e-27 | 10 |
anterior segment of eyeball | 7.13e-20 | 14 |
sympathetic nervous system | 1.40e-14 | 5 |
autonomic nervous system | 1.40e-14 | 5 |
camera-type eye | 2.76e-14 | 20 |
simple eye | 2.76e-14 | 20 |
immature eye | 2.76e-14 | 20 |
ocular region | 2.76e-14 | 20 |
eyeball of camera-type eye | 2.76e-14 | 20 |
optic cup | 2.76e-14 | 20 |
optic vesicle | 2.76e-14 | 20 |
eye primordium | 2.76e-14 | 20 |
eye | 1.16e-13 | 21 |
visual system | 1.16e-13 | 21 |
face | 4.26e-13 | 22 |
sense organ | 4.20e-12 | 24 |
sensory system | 4.20e-12 | 24 |
entire sense organ system | 4.20e-12 | 24 |
ectodermal placode | 1.25e-09 | 31 |
peripheral nervous system | 1.04e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 3.61e-34 | 2 |
neurofibroma | 3.61e-34 | 2 |
peripheral nervous system neoplasm | 2.62e-23 | 3 |
neuroendocrine tumor | 2.19e-12 | 6 |
neuroectodermal tumor | 5.73e-08 | 10 |
nervous system cancer | 7.48e-07 | 11 |