FFCP PHASE1:Hg19::chr22:45809446..45809455,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27127 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11112 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000357450_5end | |||
|coexpression_cluster_id=C2648 | |||
|description=CAGE_peak_3_at_SMC1B_5end | |||
|id=chr22:45809446..45809455,- | |||
|ontology_enrichment_celltype=CL:0002535!1.19e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0002535;2.45e-26;2!CL:0002553;1.10e-13;1!CL:0002563;2.66e-13;4!CL:0002253;1.75e-07;2!CL:1000415;1.75e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,2.78e-26,2;CL:0002553,1.25e-13,1;CL:0002563,2.08e-13,4;CL:0002253,1.45e-07,2;CL:1000415,1.99e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008425;4.53e-14;1 | |||
|ontology_enrichment_disease=DOID:4362!8.77e-12!5;DOID:305!2.51e-10!106;DOID:162!3.52e-10!235;DOID:14566!8.55e-10!239;DOID:0050687!7.60e-09!143;DOID:0050686!1.53e-08!137 | |||
|ontology_enrichment_disease_v019=DOID:4362;3.91e-11;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,4.12e-11,5;DOID:305,1.38e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0000002!8.06e-10!6;UBERON:0001560!8.06e-10!6;UBERON:0006955!1.19e-08!2;UBERON:0004801!1.19e-08!2;UBERON:0003350!5.82e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0006955;2.45e-26;2!UBERON:0004801;2.45e-26;2!UBERON:0001242;2.66e-13;4!UBERON:0001262;2.66e-13;4!UBERON:0004786;2.66e-13;4!UBERON:0004808;2.66e-13;4!UBERON:0001277;2.66e-13;4!UBERON:0000002;1.99e-09;6!UBERON:0001560;1.99e-09;6!UBERON:0005911;4.57e-08;36!UBERON:0000485;5.47e-08;7!UBERON:0003929;5.47e-08;7!UBERON:0000473;4.28e-07;8!UBERON:0003350;4.28e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,2.78e-26,2;UBERON:0004801,2.78e-26,2;UBERON:0001242,2.08e-13,4;UBERON:0001262,2.08e-13,4;UBERON:0004786,2.08e-13,4;UBERON:0004808,2.08e-13,4;UBERON:0001277,2.08e-13,4;UBERON:0000002,2.07e-09,6;UBERON:0001560,2.07e-09,6;UBERON:0003350,3.78e-07,8;UBERON:0000473,4.41e-07,8;UBERON:0005911,7.42e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0.243947412259191,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81289174387433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,1.11598390910176,0,0,0,0,0,0,0,0,0.846458889008016,0,0,1.70338495076131,0,0.921722292925374,0,0,0,0,0,0,0,0,3.18138918693974,0,0.242721043499027,0,0,0,0,0,0,0,0,1.31843099381408,0,0,0,2.51932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71125999988207,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0.0897576444097721,0.977826347298073,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,1.83758992864123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0.0979923974143777,2.26353937109047,0,0,0,0,0,0,0,0,0,0.397429223405979,0,1.36885967914362,0,0,0,0,0,0.686379991447858,0,0.124252535565433,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0.599037001496973,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0.327609848846413,0,0,0,0.106691729694141,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,1.60114149657094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0,0,0,0.935757853848423,0,0,0,0,1.96251696636676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06090177505535,1.87574891109325,0,0,0,0,0,0,0,0,0.202117188958219,0,0,0,0,0,0.162806537221949,6.1901860609075,0,0,0,0,0,0,0,0 | |||
|short_description=p3@SMC1B | |||
}} |
Revision as of 16:32, 21 January 2014
Short description: | p3@SMC1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SMC1B_5end |
Coexpression cluster: | C2648_transitionalcell_acute_testis_small_breast_argyrophil_epidermoid |
Association with transcript: | 0bp_to_ENST00000357450_5end |
EntrezGene: | SMC1B |
HGNC: | 11112 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 2.78e-26 | 2 |
lung fibroblast | 1.25e-13 | 1 |
intestinal epithelial cell | 2.08e-13 | 4 |
epithelial cell of large intestine | 1.45e-07 | 2 |
epithelial cell of gall bladder | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 2.78e-26 | 2 |
cervix epithelium | 2.78e-26 | 2 |
intestinal mucosa | 2.08e-13 | 4 |
wall of intestine | 2.08e-13 | 4 |
gastrointestinal system mucosa | 2.08e-13 | 4 |
gastrointestinal system epithelium | 2.08e-13 | 4 |
intestinal epithelium | 2.08e-13 | 4 |
uterine cervix | 2.07e-09 | 6 |
neck of organ | 2.07e-09 | 6 |
epithelium of mucosa | 3.78e-07 | 8 |
testis | 4.41e-07 | 8 |
endo-epithelium | 7.42e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 4.12e-11 | 5 |
carcinoma | 1.38e-08 | 106 |