FFCP PHASE1:Hg19::chr4:3387240..3387255,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6002 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9994 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-75bp_to_ENST00000505570_5end | |||
|description=CAGE_peak_13_at_RGS12_5end | |||
|id=chr4:3387240..3387255,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.30e-19!43;CL:0000223!8.52e-17!59;CL:0000066!3.12e-15!254;CL:0002251!5.21e-12!21;CL:0002368!6.01e-11!13;CL:0002159!1.96e-08!13;CL:0002621!2.26e-08!3;CL:0002328!3.91e-08!3;CL:0000076!9.18e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002336;6.21e-15;1!CL:0002261;6.21e-15;1!CL:0002252;6.21e-15;1!CL:0002170;6.21e-15;1!CL:0002076;4.73e-11;42!CL:0002251;5.62e-11;20!CL:0000240;7.09e-10;6!CL:0000311;7.09e-10;6!CL:0000079;7.09e-10;6!CL:0000237;7.09e-10;6!CL:0000575;3.56e-08;2!CL:0001014;4.08e-08;2!CL:0001016;4.08e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002252,6.22e-15,1;CL:0002336,7.13e-15,1;CL:0002261,7.13e-15,1;CL:0002170,7.13e-15,1;CL:0002076,4.08e-11,42;CL:0002251,6.40e-11,20;CL:0000240,8.11e-10,6;CL:0000311,8.11e-10,6;CL:0000079,8.11e-10,6;CL:0000237,8.11e-10,6;CL:0000036,8.11e-10,6;CL:0000357,8.11e-10,6;CL:0000114,8.11e-10,6;CL:0000575,3.56e-08,2;CL:0001014,3.82e-08,2;CL:0001016,3.82e-08,2;CL:0000223,5.87e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.61e-14;1!CL:0000357;7.09e-10;6!CL:0000114;7.09e-10;6 | |||
|ontology_enrichment_disease=DOID:1749!3.99e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.61e-14;1!DOID:3149;1.61e-14;1!DOID:3451;6.57e-08;2!DOID:4159;6.57e-08;2!DOID:0060122;6.57e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,3.15e-14,1;DOID:3149,3.15e-14,1;DOID:3451,9.19e-08,2;DOID:4159,9.19e-08,2;DOID:0060122,9.19e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0000166!2.15e-16!21;UBERON:0000161!4.22e-15!35;UBERON:0001004!1.07e-13!72;UBERON:0000165!1.36e-13!28;UBERON:0000930!1.36e-13!28;UBERON:0004119!9.68e-12!169;UBERON:0000925!9.68e-12!169;UBERON:0006595!9.68e-12!169;UBERON:0003102!6.64e-10!95;UBERON:0001007!2.49e-09!155;UBERON:0001555!2.49e-09!155;UBERON:0007026!2.49e-09!155;UBERON:0001444!5.94e-09!48;UBERON:0001949!2.26e-08!3;UBERON:0004815!3.91e-08!3;UBERON:0002031!3.91e-08!3;UBERON:0003729!6.85e-08!5;UBERON:0001723!1.85e-07!3;UBERON:0001033!1.85e-07!3;UBERON:0010056!1.85e-07!3;UBERON:0000065!2.72e-07!53;UBERON:0000078!3.86e-07!18;UBERON:0004921!6.13e-07!129;UBERON:0004185!6.13e-07!129;UBERON:0006562!8.21e-07!11;UBERON:0002365!8.60e-07!31;UBERON:0002330!8.60e-07!31;UBERON:0001044!9.27e-07!6;UBERON:0003293!9.27e-07!6;UBERON:0003294!9.27e-07!6;UBERON:0010047!9.27e-07!6;UBERON:0000167!9.27e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001043;8.67e-19;3!UBERON:0001041;3.74e-09;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001043,1.14e-18,3;UBERON:0009143,1.14e-18,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,1.47901604066715,0,0,0,0,0,0,0,0,0,0.145398238779565,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.27865759463288,0.741568885568859,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,1.53316637465883,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09750285408626,0,0.703702806881416,2.03694579348765,0,0,0,0,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0,0,0.839910640994298,0.141775097242386,1.70161193135412,0.581267877027924,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.276242966807689,0,0,0,0.451199612907412,0.15403067420883,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0.661139661443912,0.384380134730212,1.65896526242959,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,0,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.195984794828755,0.34823682632161,0,0,0,0,0,1.06687918137261,0,0.225980740780532,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,2.32140586367385,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0.550285795565037,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0,0.295712172434091,0,0,0,0,0,0.548257766857182,0,0,0.511049710558381,0,0,0,0,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0.431855182437243,0.47775168788705,0,0,0,0,0,1.03608082081518,0.6828739083758,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0.301925687133347,0.0771741581079447,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.0645889098360061,0,0,0,0,0.435433495793923,0.342233301085281,0.471464371102113,0.430333232356058,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | |||
|short_description=p13@RGS12 | |||
}} |
Revision as of 23:58, 21 January 2014
Short description: | p13@RGS12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_RGS12_5end |
Coexpression cluster: | NA |
Association with transcript: | -75bp_to_ENST00000505570_5end |
EntrezGene: | RGS12 |
HGNC: | 9994 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of esophagus | 6.22e-15 | 1 |
buccal mucosa cell | 7.13e-15 | 1 |
endothelial cell of viscerocranial mucosa | 7.13e-15 | 1 |
keratinized cell of the oral mucosa | 7.13e-15 | 1 |
endo-epithelial cell | 4.08e-11 | 42 |
epithelial cell of alimentary canal | 6.40e-11 | 20 |
stratified squamous epithelial cell | 8.11e-10 | 6 |
keratin accumulating cell | 8.11e-10 | 6 |
stratified epithelial cell | 8.11e-10 | 6 |
keratinizing barrier epithelial cell | 8.11e-10 | 6 |
epithelial fate stem cell | 8.11e-10 | 6 |
stratified epithelial stem cell | 8.11e-10 | 6 |
surface ectodermal cell | 8.11e-10 | 6 |
corneal epithelial cell | 3.56e-08 | 2 |
CD1a-positive Langerhans cell | 3.82e-08 | 2 |
immature CD1a-positive Langerhans cell | 3.82e-08 | 2 |
endodermal cell | 5.87e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
esophagus | 1.14e-18 | 3 |
esophageal region | 1.14e-18 | 3 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 3.15e-14 | 1 |
keratoacanthoma | 3.15e-14 | 1 |
skin carcinoma | 9.19e-08 | 2 |
skin cancer | 9.19e-08 | 2 |
integumentary system cancer | 9.19e-08 | 2 |