FFCP PHASE1:Hg19::chr9:27005657..27005675,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=64922 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23379 | |||
|TSSclassifier=strong | |||
|UniProt=Q9H756 | |||
|association_with_transcript=15bp_to_ENST00000380055,NM_022901,uc003zqh.2_5end | |||
|coexpression_cluster_id=C190 | |||
|description=CAGE_peak_1_at_LRRC19_5end | |||
|id=chr9:27005657..27005675,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001045;5.93e-12;1!UBERON:0006242;9.61e-12;1 | |||
|ontology_enrichment_disease=DOID:178!4.60e-07!1;DOID:326!4.60e-07!1;DOID:3978!4.60e-07!1;DOID:3394!4.60e-07!1;DOID:5844!4.60e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!4.97e-13!27;UBERON:0005409!2.41e-12!35;UBERON:0001155!2.62e-11!9;UBERON:0000059!2.89e-09!11;UBERON:0004921!2.01e-08!129;UBERON:0004185!2.01e-08!129;UBERON:0001154!1.63e-07!1;UBERON:0001153!1.63e-07!1;UBERON:0001007!1.65e-07!155;UBERON:0001555!1.65e-07!155;UBERON:0007026!1.65e-07!155;UBERON:0005172!2.52e-07!55;UBERON:0005173!2.52e-07!55;UBERON:0001301!2.67e-07!1;UBERON:0007029!3.21e-07!1;UBERON:0006834!5.84e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;7.14e-37;17!UBERON:0005409;1.10e-28;22!UBERON:0002108;5.21e-20;4!UBERON:0001155;2.76e-19;9!UBERON:0004921;2.10e-17;33!UBERON:0000059;7.87e-16;11!UBERON:0001154;5.93e-12;1!UBERON:0001153;5.93e-12;1!UBERON:0009854;5.93e-12;1!UBERON:0001301;1.47e-11;1!UBERON:0001007;1.28e-07;81!UBERON:0001555;6.77e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,6.66e-37,17;UBERON:0005409,2.65e-25,25;UBERON:0002108,5.38e-20,4;UBERON:0001155,2.76e-19,9;UBERON:0000059,7.87e-16,11;UBERON:0001154,6.26e-12,1;UBERON:0001153,6.26e-12,1;UBERON:0001045,6.26e-12,1;UBERON:0001301,1.47e-11,1;UBERON:0004921,1.68e-07,118;UBERON:0001007,3.75e-07,145;UBERON:0001555,3.75e-07,145;UBERON:0007026,3.75e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.58426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,2.94848165003288,0.590789906681404,0,1.8448265781467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67906630284078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.18338180380984,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.96209544862804,27.2449298670285,145.425174494203,0,0,0,0,0,0,0,0,0,0,13.308978765353,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,1.57254001417827,0,0,0,0,0,0,0,0,0,0,0,0,2.13452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,65.6451541802321,6.18964139992978,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76872455576384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82876887473404,0,0,0,0.971421986118279,0,0,0,0,0,0,65.598034391753,43.2747929797835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.1030199395852,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p1@LRRC19 | |||
}} |
Revision as of 01:06, 23 January 2014
Short description: | p1@LRRC19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | No |
Description: | CAGE_peak_1_at_LRRC19_5end |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | 15bp_to_ENST00000380055, NM_022901, uc003zqh.2_5end |
EntrezGene: | LRRC19 |
HGNC: | 23379 |
UniProt: | Q9H756 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 6.66e-37 | 17 |
gastrointestinal system | 2.65e-25 | 25 |
small intestine | 5.38e-20 | 4 |
colon | 2.76e-19 | 9 |
large intestine | 7.87e-16 | 11 |
vermiform appendix | 6.26e-12 | 1 |
caecum | 6.26e-12 | 1 |
midgut | 6.26e-12 | 1 |
epididymis | 1.47e-11 | 1 |
subdivision of digestive tract | 1.68e-07 | 118 |
digestive system | 3.75e-07 | 145 |
digestive tract | 3.75e-07 | 145 |
primitive gut | 3.75e-07 | 145 |