FFCP PHASE1:Hg19::chr9:118915849..118915859,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5069 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8602 | |||
|TSSclassifier=weak | |||
|UniProt=Q13219,Q7Z613,Q86YM8,Q8IWT8 | |||
|association_with_transcript=-211bp_to_NM_002581,uc004bjn.2_5end | |||
|coexpression_cluster_id=C4794 | |||
|description=CAGE_peak_16_at_PAPPA_5end | |||
|id=chr9:118915849..118915859,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.49e-21!180;CL:0000057!1.28e-18!75;CL:0000187!1.02e-14!54;CL:0000680!2.22e-13!57;CL:0000056!2.22e-13!57;CL:0000355!2.22e-13!57;CL:0000183!1.43e-12!59;CL:0000393!3.45e-12!60;CL:0000211!3.45e-12!60;CL:0000192!7.03e-09!42;CL:0000514!7.03e-09!42;CL:0002494!1.65e-08!16;CL:0000048!3.22e-07!430;CL:0000188!3.60e-07!9;CL:0000723!4.98e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0002549;3.15e-18;2!CL:0002548;1.56e-13;6!CL:0002541;9.35e-13;3!CL:0000342;5.53e-10;1!CL:0002565;5.53e-10;1!CL:0002539;1.88e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,2.43e-18,2;CL:0002548,2.06e-13,6;CL:0002541,9.95e-13,3;CL:0000342,6.33e-10,1;CL:0002565,6.33e-10,1;CL:0002539,1.40e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.64e-10;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3571;5.53e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3571,8.99e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001134!8.05e-12!61;UBERON:0002036!8.05e-12!61;UBERON:0003082!8.05e-12!61;UBERON:0004290!2.81e-11!70;UBERON:0000914!3.97e-11!83;UBERON:0002329!3.97e-11!83;UBERON:0003077!3.97e-11!83;UBERON:0003059!3.97e-11!83;UBERON:0007282!3.97e-11!83;UBERON:0009618!3.97e-11!83;UBERON:0007285!3.97e-11!83;UBERON:0002385!4.01e-11!63;UBERON:0001015!4.01e-11!63;UBERON:0000383!4.01e-11!63;UBERON:0002200!1.80e-09!11;UBERON:0006876!1.80e-09!11;UBERON:0000486!1.14e-08!82;UBERON:0005256!1.22e-07!143;UBERON:0002100!2.50e-07!216;UBERON:0000475!9.74e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0005629;3.15e-18;2!UBERON:0005358;3.15e-18;2!UBERON:0001886;3.15e-18;2!UBERON:0004086;3.15e-18;2!UBERON:0005282;3.15e-18;2!UBERON:0005281;3.15e-18;2!UBERON:0006876;8.88e-13;11!UBERON:0003124;9.35e-13;3!UBERON:0000920;9.35e-13;3!UBERON:0002506;5.53e-10;1!UBERON:0001769;5.53e-10;1!UBERON:0000488;1.39e-09;4!UBERON:0004237;1.88e-08;10!UBERON:0004695;1.88e-08;10!UBERON:0002111;1.88e-08;10!UBERON:0004178;1.88e-08;10!UBERON:0005284;7.76e-08;5!UBERON:0007625;1.00e-07;11!UBERON:0000947;6.44e-07;21!UBERON:0010191;6.44e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005629,2.43e-18,2;UBERON:0005358,2.43e-18,2;UBERON:0001886,2.43e-18,2;UBERON:0004086,2.43e-18,2;UBERON:0005282,2.43e-18,2;UBERON:0005281,2.43e-18,2;UBERON:0006876,8.12e-13,11;UBERON:0000920,9.95e-13,3;UBERON:0003124,4.66e-12,7;UBERON:0002506,6.33e-10,1;UBERON:0001769,6.33e-10,1;UBERON:0000488,1.39e-09,4;UBERON:0004237,1.40e-08,10;UBERON:0004695,1.40e-08,10;UBERON:0002111,1.40e-08,10;UBERON:0004178,1.40e-08,10;UBERON:0004535,6.81e-08,109;UBERON:0005284,7.01e-08,5;UBERON:0007625,1.01e-07,11;UBERON:0001009,1.23e-07,112;UBERON:0000947,5.25e-07,21;UBERON:0010191,5.25e-07,21 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0.446961094427288,0.872338524100369,0,0,1.04474251279935,0.245733936501509,0,0.873765488520689,0.263766978228454,0,0,0,2.41077811209591,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.767175371061182,0,0.50133791063589,0.579386075843295,0,0,0.189069634328136,1.33037638477538,0.351339142772504,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506522046658319,0.529636723252875,2.58152958673932,0,0,0,0.24666754841716,1.55605517699883,1.0776853765575,1.14423332179421,1.81628913173918,1.15235184896,0.468642863667593,0.312160076830321,0,0.149448680551801,0.23486899728753,0,0,0.204154171254893,0,0.309977343527296,0,1.23633464639278,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0,0,0.300476117813194,0.340296549480063,0.358779271377724,0.85422955527427,0.635795703478686,0,0.515262646192195,0,0,0.168776332241266,0.779496041289589,0.757301322732344,0.276149695926898,0.484938170456436,0.355009592516614,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.928735856063958,1.44375896333917,0.118306800039844,0,0,0,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,1.20097467208968,0.109750285408626,0,0,0,0.651616610620649,0,0,0,2.34817388471643,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0.428933980974443,0,0.823240336780769,0,0.710783897485092,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,0,0.542530047399471,0.623912584592421,0.535286966391485,0.946214490203608,0.702848489956279,0.300946099727719,0,0,0,0,0.260650843404249,0,0,0,0,0,0,0,0,0.744323423456331,0.306923946576125,0,0.384417447767103,0,0.160853921143607,0,0.154209693802656,0.177561725313127,0.739144404124282,0.519254429183621,0.348631135379878,0,0,0,0.114814448164607,0.182091168006717,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.854738209659,0,0,0,0,0,0.773365746336976,1.07834031980251,0.15350367472613,0.413509717453592,0.859361958946189,0.580066775656914,0.255679882248303,0.0890320356467374,0,0,0,0,0,1.88887408098384,1.3940745403212,0.308033580176089,0,0,0,0.143124886741991,0.372158369359667,0.316379424718726,0.190630193923825,0,0.855877976067841,0.318203247925937,0,0.359744915166629,0.274537029736055,0.471249609382746,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0.545999645631943,0.141405431953713,0,0,0,0,0.578775534266688,0.655894752046633,0.202910376962704,0.30982349809975,0,0.143411352204052,0.687743287091848,0,0,0,0,0,0.349934720244983,0,0,0,1.50630081242847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,1.27600463892768,0.183195186803725,2.13213910407454,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0.313932918407225,0,0,0,0,0.195984794828755,0.0870592065804026,0.17472666824203,0.171986032471617,0,0.0730893170861856,0,0.0969890164884194,0.264768380074501,0,0.137041924646751,0,0,0,0.320635281006135,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394028536495991,0.157363764404994,0,0,0.191915197319445,0,0,0.5085370753095,0,0,0,0,0,0.340776043570843,0,0,0,0,0,0.342173675768659,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124192805882767,0,0,0,0,0,0,0,0.149254802886874,1.16856654923612,0.554805861502613,0.378806010550178,0.50313580350515,0.889811221596536,0.915360273587694,0.302461847526478,0.466311601748341,0.147855149989634,0.159296767163702,0,0,0.829412415681711,0,0,0.450772826991655,0,0.406870733204662,0.727394636810238,0.429642228169954,0,0,0,0.686791410365586,0.336749488765919,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0.219284049578707,0.176689145945881,0.578742114812744,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471797825567689,0,0,0.637724760305049,0.371807292777007,0.558644917973244,0.636008701306837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0.0634158101939068,0,0,0,0.175871244359621,0,0,0,0,0,5.49954695008361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17071847709395,0,0,0.118332000730565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0,0.126166424835079,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0.112131862580613,0,0,0.217716747896961,0,0,0.0717222053926763,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p16@PAPPA | |||
}} |
Revision as of 03:00, 23 January 2014
Short description: | p16@PAPPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_PAPPA_5end |
Coexpression cluster: | C4794_placenta_Smooth_Fibroblast_neuroectodermal_Lens_mesenchymal_chorionic |
Association with transcript: | -211bp_to_NM_002581, uc004bjn.2_5end |
EntrezGene: | PAPPA |
HGNC: | 8602 |
UniProt: | Q13219Q7Z613Q86YM8Q8IWT8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 2.43e-18 | 2 |
cardiac fibroblast | 2.06e-13 | 6 |
chorionic membrane mesenchymal stem cell | 9.95e-13 | 3 |
pigment cell (sensu Vertebrata) | 6.33e-10 | 1 |
iris pigment epithelial cell | 6.33e-10 | 1 |
aortic smooth muscle cell | 1.40e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
vascular plexus | 2.43e-18 | 2 |
ventricle of nervous system | 2.43e-18 | 2 |
choroid plexus | 2.43e-18 | 2 |
brain ventricle | 2.43e-18 | 2 |
ventricular system of brain | 2.43e-18 | 2 |
ventricular system of central nervous system | 2.43e-18 | 2 |
vasculature of organ | 8.12e-13 | 11 |
egg chorion | 9.95e-13 | 3 |
chorion | 4.66e-12 | 7 |
iris epithelium | 6.33e-10 | 1 |
iris | 6.33e-10 | 1 |
atypical epithelium | 1.39e-09 | 4 |
blood vessel smooth muscle | 1.40e-08 | 10 |
arterial system smooth muscle | 1.40e-08 | 10 |
artery smooth muscle tissue | 1.40e-08 | 10 |
aorta smooth muscle tissue | 1.40e-08 | 10 |
cardiovascular system | 6.81e-08 | 109 |
brain vasculature | 7.01e-08 | 5 |
pigment epithelium of eye | 1.01e-07 | 11 |
circulatory system | 1.23e-07 | 112 |
aorta | 5.25e-07 | 21 |
aortic system | 5.25e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
liver cancer | 8.99e-10 | 1 |