CL:0000183: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A cell whose primary function is to shorten." [FB:ma] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000183 | |||
|is_a=CL:0000003 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=contractile cell | |||
|namespace=cell | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Revision as of 10:15, 12 September 2014
| Name: | contractile cell |
|---|---|
| Namespace: | cell |
| Definition: | "A cell whose primary function is to shorten." [FB:ma] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000003(native cell) |
|---|
Children
| is a: | CL:0000186 (myofibroblast cell),CL:0000187 (muscle cell),CL:0000669 (pericyte cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
... further results Mouse (Mus musculus)
- 11210-116A4 (Smooth Muscle Cells - Aortic, donor0)
- 11212-116A6 (Smooth Muscle Cells - Umbilical artery, donor0)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11239-116D6 (Smooth Muscle Cells - Colonic, donor1)
- 11240-116D7 (Skeletal Muscle Satellite Cells, donor1)
- 11244-116E2 (Canine hepatocytes, donor1)
- 11257-116F6 (Smooth Muscle Cells - Prostate, donor1)
- 11258-116F7 (Smooth Muscle Cells - Uterine, donor1)
- 11281-116I3 (Skeletal Muscle Cells, donor1)
- 11282-116I4 (Skeletal muscle cells differentiated into Myotubes - multinucleated, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000183 (contractile cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results for this cluster
