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{{DOID
{{DOID
|id=DOID:3347
|alt_id=DOID:183
|name=osteosarcoma
|namespace=disease_ontology
|def=
|xref=MSH:D012516;;NCI:C9145;;OMIM:259500;;SNOMEDCT_2010_1_31:189878003;;SNOMEDCT_2010_1_31:21708004;;SNOMEDCT_2010_1_31:307576001;;SNOMEDCT_2010_1_31:408387006;;UMLS_CUI:C0029463;;UMLS_CUI:C0206639
|is_a=DOID:201
|synonym="bone tissue neoplasm" EXACT [];;"Osteogenic sarcoma" EXACT [NCI2004_11_17:C9145];;"osteoid sarcoma" EXACT [CSP2005:2019-1578];;"osteosarcoma" EXACT [MTH:NOCODE];;"Osteosarcoma - disorder" EXACT [SNOMEDCT_2005_07_31:307576001];;"Osteosarcoma - disorder" EXACT [SNOMEDCT_2005_07_31:408387006];;"Osteosarcoma, no ICD-O subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:21708004];;"Skeletal sarcoma" EXACT [NCI2004_11_17:C9312]
|comment=OMIM mapping confirmed by DO. [SN].
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=DOID:183
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3347
|is_a=DOID:201
|is_obsolete=
|located_in=
|located_in=
|name=osteosarcoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="bone tissue neoplasm" EXACT [];;"Osteogenic sarcoma" EXACT [NCI2004_11_17:C9145];;"osteoid sarcoma" EXACT [CSP2005:2019-1578];;"osteosarcoma" EXACT [MTH:NOCODE];;"Osteosarcoma - disorder" EXACT [SNOMEDCT_2005_07_31:307576001];;"Osteosarcoma - disorder" EXACT [SNOMEDCT_2005_07_31:408387006];;"Osteosarcoma, no ICD-O subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:21708004];;"Skeletal sarcoma" EXACT [NCI2004_11_17:C9312]
|union_of=
|xref=MSH:D012516;;NCI:C9145;;OMIM:259500;;SNOMEDCT_2010_1_31:189878003;;SNOMEDCT_2010_1_31:21708004;;SNOMEDCT_2010_1_31:307576001;;SNOMEDCT_2010_1_31:408387006;;UMLS_CUI:C0029463;;UMLS_CUI:C0206639
}}
}}

Revision as of 10:34, 12 September 2014

Name:osteosarcoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D012516
NCI:C9145
OMIM:259500
SNOMEDCT_2010_1_31:189878003
SNOMEDCT_2010_1_31:21708004
SNOMEDCT_2010_1_31:307576001
SNOMEDCT_2010_1_31:408387006
UMLS_CUI:C0029463

UMLS_CUI:C0206639
Synonyms: "bone tissue neoplasm" EXACT []
"Osteogenic sarcoma" EXACT [NCI2004_11_17:C9145]
"osteoid sarcoma" EXACT [CSP2005:2019-1578]
"osteosarcoma" EXACT [MTH:NOCODE]
"Osteosarcoma - disorder" EXACT [SNOMEDCT_2005_07_31:307576001]
"Osteosarcoma - disorder" EXACT [SNOMEDCT_2005_07_31:408387006]
"Osteosarcoma, no ICD-O subtype (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:21708004]
"Skeletal sarcoma" EXACT [NCI2004_11_17:C9312]
Comments:OMIM mapping confirmed by DO. [SN].
Alt_id: DOID:183

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:201(connective tissue cancer)



Children


is a:FF:10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

  • 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))

Mouse (Mus musculus)

  • 10510-107D6 (osteosarcoma cell line:143B/TK^(-)neo^(R))

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3347 (osteosarcoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr18:26425339..26425342,+#_50e31ce99bee1201ee19c85300c82bd2p@chr18:26425339..26425342, +
5.42e-195FFCP PHASE1:Hg19::chr18:26425339..26425342,+#_50e31ce99bee1201ee19c85300c82bd2p@chr18:26425339..26425342, +
2.55e-98FFCP PHASE2:Hg19::chr2:30864583..30864594,+#_50d96dbcc15cb2cd8741d906322343cap18@LCLAT1
2.55e-98FFCP PHASE1:Hg19::chr2:30864583..30864594,+#_50d96dbcc15cb2cd8741d906322343cap18@LCLAT1
2.55e-98FFCP PHASE2:Hg19::chr14:62394022..62394029,+#_50d96dbcc15cb2cd8741d906322343cap@chr14:62394022..62394029, +
2.55e-98FFCP PHASE1:Hg19::chr14:62394022..62394029,+#_50d96dbcc15cb2cd8741d906322343cap@chr14:62394022..62394029, +
2.39e-66FFCP PHASE2:Hg19::chr19:5435171..5435175,+#_fa4942307ef9877ef4ddfb8eba221a50p@chr19:5435171..5435175, +
2.39e-66FFCP PHASE1:Hg19::chr19:5435171..5435175,+#_fa4942307ef9877ef4ddfb8eba221a50p@chr19:5435171..5435175, +
2.39e-66FFCP PHASE2:Hg19::chr3:5372381..5372394,+#_fa4942307ef9877ef4ddfb8eba221a50p@chr3:5372381..5372394, +
2.39e-66FFCP PHASE1:Hg19::chr3:5372381..5372394,+#_fa4942307ef9877ef4ddfb8eba221a50p@chr3:5372381..5372394, +
4.66e-66FFCP PHASE2:Hg19::chr1:186925361..186925368,+#_e9b22a2d98781457d19906a387a13c67p@chr1:186925361..186925368, +
4.66e-66FFCP PHASE1:Hg19::chr1:186925361..186925368,+#_e9b22a2d98781457d19906a387a13c67p@chr1:186925361..186925368, +
4.66e-66FFCP PHASE2:Hg19::chr4:3344434..3344441,+#_e9b22a2d98781457d19906a387a13c67p@chr4:3344434..3344441, +
4.66e-66FFCP PHASE1:Hg19::chr4:3344434..3344441,+#_e9b22a2d98781457d19906a387a13c67p@chr4:3344434..3344441, +
1.46e-50FFCP PHASE2:Hg19::chr5:311353..311361,+#_bf6a06edd4b33f7446e235c233151a0ep@chr5:311353..311361, +
1.46e-50FFCP PHASE1:Hg19::chr5:311353..311361,+#_bf6a06edd4b33f7446e235c233151a0ep@chr5:311353..311361, +
1.46e-50FFCP PHASE2:Hg19::chr20:57197951..57197958,+#_bf6a06edd4b33f7446e235c233151a0ep@chr20:57197951..57197958, +
1.46e-50FFCP PHASE1:Hg19::chr20:57197951..57197958,+#_bf6a06edd4b33f7446e235c233151a0ep@chr20:57197951..57197958, +
1.46e-50FFCP PHASE2:Hg19::chrX:103498992..103499001,-#_bf6a06edd4b33f7446e235c233151a0ep@chrX:103498992..103499001, -
1.46e-50FFCP PHASE1:Hg19::chrX:103498992..103499001,-#_bf6a06edd4b33f7446e235c233151a0ep@chrX:103498992..103499001, -
2.42e-50FFCP PHASE2:Hg19::chr14:62583348..62583354,+#_74330f83e6c55c86ba477aa39df43eb8p3@FLJ43390
2.42e-50FFCP PHASE1:Hg19::chr14:62583348..62583354,+#_74330f83e6c55c86ba477aa39df43eb8p3@FLJ43390
3.99e-50FFCP PHASE1:Hg19::chr8:123580943..123580958,-#_6a573803adb7a853015f59b01130e8bfp@chr8:123580943..123580958, -
3.99e-50FFCP PHASE2:Hg19::chr8:123580943..123580958,-#_6a573803adb7a853015f59b01130e8bfp@chr8:123580943..123580958, -
6.58e-50FFCP PHASE2:Hg19::chr15:90017749..90017754,+#_5abacc20bfbb18603ed28a1869888896p@chr15:90017749..90017754, +
6.58e-50FFCP PHASE1:Hg19::chr15:90017749..90017754,+#_5abacc20bfbb18603ed28a1869888896p@chr15:90017749..90017754, +
6.58e-50FFCP PHASE2:Hg19::chr9:87024210..87024217,+#_5abacc20bfbb18603ed28a1869888896p@chr9:87024210..87024217, +
6.58e-50FFCP PHASE1:Hg19::chr9:87024210..87024217,+#_5abacc20bfbb18603ed28a1869888896p@chr9:87024210..87024217, +
6.58e-50FFCP PHASE2:Hg19::chr10:130077036..130077085,+#_5abacc20bfbb18603ed28a1869888896p@chr10:130077036..130077085, +
6.58e-50FFCP PHASE1:Hg19::chr10:130077036..130077085,+#_5abacc20bfbb18603ed28a1869888896p@chr10:130077036..130077085, +
6.58e-50FFCP PHASE2:Hg19::chr2:153382316..153382323,+#_5abacc20bfbb18603ed28a1869888896p@chr2:153382316..153382323, +
6.58e-50FFCP PHASE1:Hg19::chr2:153382316..153382323,+#_5abacc20bfbb18603ed28a1869888896p@chr2:153382316..153382323, +
6.62e-41FFCP PHASE2:Hg19::chr2:3870539..3870544,+#_f280024ed067a4d498fc3323e851888ep@chr2:3870539..3870544, +
6.62e-41FFCP PHASE1:Hg19::chr2:3870539..3870544,+#_f280024ed067a4d498fc3323e851888ep@chr2:3870539..3870544, +
9.91e-41FFCP PHASE2:Hg19::chr3:185764595..185764606,-#_83d0553b8163381639c6751a874de8f3p@chr3:185764595..185764606, -
9.91e-41FFCP PHASE1:Hg19::chr3:185764595..185764606,-#_83d0553b8163381639c6751a874de8f3p@chr3:185764595..185764606, -
1.48e-40FFCP PHASE2:Hg19::chr3:6221525..6221536,-#_f633a73189dd65867ac5810e1854074cp@chr3:6221525..6221536, -
1.48e-40FFCP PHASE1:Hg19::chr3:6221525..6221536,-#_f633a73189dd65867ac5810e1854074cp@chr3:6221525..6221536, -
2.21e-40FFCP PHASE2:Hg19::chr22:44807732..44807767,-#_55f24be4b389a11ad1e99de3bf968002p@chr22:44807732..44807767, -
2.21e-40FFCP PHASE1:Hg19::chr22:44807732..44807767,-#_55f24be4b389a11ad1e99de3bf968002p@chr22:44807732..44807767, -
2.21e-40FFCP PHASE2:Hg19::chr17:8007027..8007033,-#_55f24be4b389a11ad1e99de3bf968002p@chr17:8007027..8007033, -
2.21e-40FFCP PHASE1:Hg19::chr17:8007027..8007033,-#_55f24be4b389a11ad1e99de3bf968002p@chr17:8007027..8007033, -
3.3e-40FFCP PHASE1:Hg19::chr20:49948180..49948199,-#_c502dbf361e939909ef92a41fa076a05p@chr20:49948180..49948199, -
3.3e-40FFCP PHASE2:Hg19::chr1:15668240..15668263,+#_c502dbf361e939909ef92a41fa076a05p10@FHAD1
3.3e-40FFCP PHASE1:Hg19::chr1:15668240..15668263,+#_c502dbf361e939909ef92a41fa076a05p10@FHAD1
3.3e-40FFCP PHASE2:Hg19::chr20:49948180..49948199,-#_c502dbf361e939909ef92a41fa076a05p@chr20:49948180..49948199, -
1.84e-34FFCP PHASE2:Hg19::chr14:62394467..62394477,+#_acd49884669727435103ab84f0379356p@chr14:62394467..62394477, +
1.84e-34FFCP PHASE1:Hg19::chr14:62394467..62394477,+#_acd49884669727435103ab84f0379356p@chr14:62394467..62394477, +
3.61e-34FFCP PHASE2:Hg19::chr10:104417630..104417634,+#_c019bf34734ebcf5649d564be06dce0fp24@TRIM8
3.61e-34FFCP PHASE2:Hg19::chr2:36806022..36806034,-#_c019bf34734ebcf5649d564be06dce0fp20@FEZ2
3.61e-34FFCP PHASE1:Hg19::chr2:36806022..36806034,-#_c019bf34734ebcf5649d564be06dce0fp20@FEZ2
3.61e-34FFCP PHASE2:Hg19::chr15:29451653..29451657,-#_c019bf34734ebcf5649d564be06dce0fp@chr15:29451653..29451657, -
3.61e-34FFCP PHASE1:Hg19::chr15:29451653..29451657,-#_c019bf34734ebcf5649d564be06dce0fp@chr15:29451653..29451657, -
3.61e-34FFCP PHASE1:Hg19::chr10:104417630..104417634,+#_c019bf34734ebcf5649d564be06dce0fp24@TRIM8
9.99e-30FFCP PHASE2:Hg19::chr2:207848375..207848377,-#_4059101ccf7cbfb7c9946a95695eea6fp@chr2:207848375..207848377, -
9.99e-30FFCP PHASE1:Hg19::chr2:207848375..207848377,-#_4059101ccf7cbfb7c9946a95695eea6fp@chr2:207848375..207848377, -
1.33e-29FFCP PHASE1:Hg19::chr21:39724241..39724253,+#_39a6b9acb3506aee577577abd9cd16bep@chr21:39724241..39724253, +
1.33e-29FFCP PHASE2:Hg19::chr1:186946659..186946664,+#_39a6b9acb3506aee577577abd9cd16bep@chr1:186946659..186946664, +
1.33e-29FFCP PHASE1:Hg19::chr1:186946659..186946664,+#_39a6b9acb3506aee577577abd9cd16bep@chr1:186946659..186946664, +
1.33e-29FFCP PHASE2:Hg19::chr3:185541195..185541206,-#_39a6b9acb3506aee577577abd9cd16bep13@IGF2BP2
1.33e-29FFCP PHASE1:Hg19::chr3:185541195..185541206,-#_39a6b9acb3506aee577577abd9cd16bep13@IGF2BP2
1.33e-29FFCP PHASE2:Hg19::chr14:50234971..50234978,+#_39a6b9acb3506aee577577abd9cd16bep10@KLHDC2
1.33e-29FFCP PHASE2:Hg19::chr21:39724241..39724253,+#_39a6b9acb3506aee577577abd9cd16bep@chr21:39724241..39724253, +
1.33e-29FFCP PHASE1:Hg19::chr14:50234971..50234978,+#_39a6b9acb3506aee577577abd9cd16bep10@KLHDC2
2.37e-29FFCP PHASE2:Hg19::chr3:87841697..87841709,+#_0d29b45861606ba2e9a4f244111e9d92p@chr3:87841697..87841709, +
2.37e-29FFCP PHASE1:Hg19::chr3:87841697..87841709,+#_0d29b45861606ba2e9a4f244111e9d92p@chr3:87841697..87841709, +
3.16e-29FFCP PHASE2:Hg19::chr1:161392010..161392029,+#_da9bf277c544a63d9b8f5ce71c5c3ac8p@chr1:161392010..161392029, +
3.16e-29FFCP PHASE1:Hg19::chr1:161392010..161392029,+#_da9bf277c544a63d9b8f5ce71c5c3ac8p@chr1:161392010..161392029, +
2.16e-26FFCP PHASE2:Hg19::chr17:38174999..38175001,+#_2b82130f5a90b4a4cafd203573d65c3ep8@CASC3
2.16e-26FFCP PHASE1:Hg19::chr17:38174999..38175001,+#_2b82130f5a90b4a4cafd203573d65c3ep8@CASC3
2.78e-26FFCP PHASE2:Hg19::chr22:39415641..39415647,+#_832953e8a9b3c83487153a55a7ad1604p@chr22:39415641..39415647, +
2.78e-26FFCP PHASE1:Hg19::chr22:39415641..39415647,+#_832953e8a9b3c83487153a55a7ad1604p@chr22:39415641..39415647, +
3.58e-26FFCP PHASE1:Hg19::chr7:27205066..27205067,-#_eecc5c7bd9924c9231efbced4ac07fc4p7@HOXA9
3.58e-26FFCP PHASE2:Hg19::chr16:56648572..56648582,-#_eecc5c7bd9924c9231efbced4ac07fc4p@chr16:56648572..56648582, -
3.58e-26FFCP PHASE1:Hg19::chr16:56648572..56648582,-#_eecc5c7bd9924c9231efbced4ac07fc4p@chr16:56648572..56648582, -
3.58e-26FFCP PHASE2:Hg19::chr7:27205066..27205067,-#_eecc5c7bd9924c9231efbced4ac07fc4p7@HOXA9
4.61e-26FFCP PHASE2:Hg19::chr3:54945400..54945403,+#_b6781fb800b54038686f01dc554d8632p@chr3:54945400..54945403, +
4.61e-26FFCP PHASE1:Hg19::chr3:54945400..54945403,+#_b6781fb800b54038686f01dc554d8632p@chr3:54945400..54945403, +
4.61e-26FFCP PHASE2:Hg19::chr3:55178388..55178399,-#_b6781fb800b54038686f01dc554d8632p@chr3:55178388..55178399, -
4.61e-26FFCP PHASE1:Hg19::chr3:55178388..55178399,-#_b6781fb800b54038686f01dc554d8632p@chr3:55178388..55178399, -
5.93e-26FFCP PHASE2:Hg19::chr7:28726088..28726091,-#_b9ada0079d099292e9f5fb32ca52bc28p@chr7:28726088..28726091, -
5.93e-26FFCP PHASE1:Hg19::chr8:66556795..66556830,+#_b9ada0079d099292e9f5fb32ca52bc28p3@MTFR1
5.93e-26FFCP PHASE1:Hg19::chr7:28726088..28726091,-#_b9ada0079d099292e9f5fb32ca52bc28p@chr7:28726088..28726091, -
5.93e-26FFCP PHASE2:Hg19::chr10:124907798..124907817,+#_b9ada0079d099292e9f5fb32ca52bc28p3@HMX2
5.93e-26FFCP PHASE2:Hg19::chr7:150864780..150864785,-#_b9ada0079d099292e9f5fb32ca52bc28p1@GBX1
5.93e-26FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_b9ada0079d099292e9f5fb32ca52bc28p4@LINC00460
5.93e-26FFCP PHASE1:Hg19::chr10:124907798..124907817,+#_b9ada0079d099292e9f5fb32ca52bc28p3@HMX2
5.93e-26FFCP PHASE2:Hg19::chr16:24842180..24842181,+#_b9ada0079d099292e9f5fb32ca52bc28p@chr16:24842180..24842181, +
5.93e-26FFCP PHASE1:Hg19::chr16:24842180..24842181,+#_b9ada0079d099292e9f5fb32ca52bc28p@chr16:24842180..24842181, +
5.93e-26FFCP PHASE1:Hg19::chr7:150864780..150864785,-#_b9ada0079d099292e9f5fb32ca52bc28p1@GBX1
5.93e-26FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_b9ada0079d099292e9f5fb32ca52bc28p4@LINC00460
5.93e-26FFCP PHASE2:Hg19::chr9:21468453..21468457,-#_b9ada0079d099292e9f5fb32ca52bc28p@chr9:21468453..21468457, -
5.93e-26FFCP PHASE2:Hg19::chr8:66556795..66556830,+#_b9ada0079d099292e9f5fb32ca52bc28p3@MTFR1
5.93e-26FFCP PHASE1:Hg19::chr9:21468453..21468457,-#_b9ada0079d099292e9f5fb32ca52bc28p@chr9:21468453..21468457, -
7.62e-26FFCP PHASE2:Hg19::chr21:32617683..32617689,-#_016689e0fb4aaf360a96ddaf39ebf4bfp@chr21:32617683..32617689, -
7.62e-26FFCP PHASE1:Hg19::chr21:32617683..32617689,-#_016689e0fb4aaf360a96ddaf39ebf4bfp@chr21:32617683..32617689, -
7.62e-26FFCP PHASE2:Hg19::chr2:36806197..36806224,-#_016689e0fb4aaf360a96ddaf39ebf4bfp11@FEZ2
7.62e-26FFCP PHASE1:Hg19::chr2:36806197..36806224,-#_016689e0fb4aaf360a96ddaf39ebf4bfp11@FEZ2
7.62e-26FFCP PHASE2:Hg19::chr4:45735833..45735846,-#_016689e0fb4aaf360a96ddaf39ebf4bfp@chr4:45735833..45735846, -
7.62e-26FFCP PHASE2:Hg19::chr21:38071760..38071776,+#_016689e0fb4aaf360a96ddaf39ebf4bfp5@SIM2

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