DOID:5409: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{DOID | {{DOID | ||
| | |alt_id= | ||
|comment=OMIM mapping confirmed by DO. [SN]. | |comment=OMIM mapping confirmed by DO. [SN]. | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:5409 | |||
|is_a=DOID:3905 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lung small cell carcinoma | |||
|namespace=disease_ontology | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym="Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006];;"SCLC" EXACT [CSP2005:2017-6589];;"small cell carcinoma of lung" RELATED [];;"small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001];;"small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917] | ||
|union_of= | |||
|xref=MSH:D055752;;NCI:C4917;;OMIM:182280;;SNOMEDCT_2010_1_31:254632001;;SNOMEDCT_2010_1_31:254633006;;UMLS_CUI:C0149925 | |||
}} | }} | ||
Revision as of 10:36, 12 September 2014
| Name: | lung small cell carcinoma | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Xrefs: |
| ||
| Synonyms: |
"Oat cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254633006] "SCLC" EXACT [CSP2005:2017-6589] "small cell carcinoma of lung" RELATED [] "small cell carcinoma of lung (disorder)" EXACT [SNOMEDCT_2005_07_31:254632001] "small cell neuroendocrine carcinoma of lung" EXACT [NCI2004_11_17:C4917] | ||
| Comments: | OMIM mapping confirmed by DO. [SN]. |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:3905(lung carcinoma) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10462-106H3
- 10468-106H9
- 10502-107C7
- 10503-107C8
- 10504-107C9
- 10505-107D1
- 10506-107D2
- 10524-107F2
- 10525-107F3
- 10526-107F4
... further results Mouse (Mus musculus)
- 10462-106H3
- 10468-106H9
- 10502-107C7
- 10503-107C8
- 10504-107C9
- 10505-107D1
- 10506-107D2
- 10524-107F2
- 10525-107F3
- 10526-107F4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:5409 (lung small cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31 | p@chr6:125378873..125378876, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_5a0cadd9f97072f65b901942816bde31 | p@chr6:125378873..125378876, + |
| 2.4e-66 | FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93 | p@chr8:40525350..40525354, - |
| 2.4e-66 | FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_40c90676995a138ba0819dfe8db6fb93 | p@chr8:40525350..40525354, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:77129779..77129782,+#_5be4114e7d0131f457d60e83d77a108d | p@chr3:77129779..77129782, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:98108427..98108430,-#_5be4114e7d0131f457d60e83d77a108d | p@chr8:98108427..98108430, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:103235132..103235142,+#_5be4114e7d0131f457d60e83d77a108d | p@chr2:103235132..103235142, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:39970826..39970832,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:39970826..39970832, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:59113338..59113345,+#_5be4114e7d0131f457d60e83d77a108d | p@chr14:59113338..59113345, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:68113370..68113379,-#_5be4114e7d0131f457d60e83d77a108d | p@chr2:68113370..68113379, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:138721040..138721056,+#_5be4114e7d0131f457d60e83d77a108d | p@chr7:138721040..138721056, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:37653629..37653673,-#_5be4114e7d0131f457d60e83d77a108d | p@chr4:37653629..37653673, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:86289712..86289720,+#_5be4114e7d0131f457d60e83d77a108d | p@chr3:86289712..86289720, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:79840117..79840122,+#_5be4114e7d0131f457d60e83d77a108d | p@chr7:79840117..79840122, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:65821760..65821780,+#_5be4114e7d0131f457d60e83d77a108d | p@chr10:65821760..65821780, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:79756320..79756329,-#_5be4114e7d0131f457d60e83d77a108d | p@chr12:79756320..79756329, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:95776285..95776292,-#_5be4114e7d0131f457d60e83d77a108d | p@chr7:95776285..95776292, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:28572013..28572023,-#_5be4114e7d0131f457d60e83d77a108d | p@chr5:28572013..28572023, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:25269257..25269262,+#_5be4114e7d0131f457d60e83d77a108d | p@chr13:25269257..25269262, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:238385078..238385087,-#_5be4114e7d0131f457d60e83d77a108d | p@chr2:238385078..238385087, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:27925654..27925663,-#_5be4114e7d0131f457d60e83d77a108d | p@chr12:27925654..27925663, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:57525544..57525580,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:57525544..57525580, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:998859..998863,-#_5be4114e7d0131f457d60e83d77a108d | p@chr6:998859..998863, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:36966895..36966899,-#_5be4114e7d0131f457d60e83d77a108d | p@chr14:36966895..36966899, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:116215608..116215615,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:116215608..116215615, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:129704562..129704569,+#_5be4114e7d0131f457d60e83d77a108d | p@chr10:129704562..129704569, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:82275651..82275662,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:82275651..82275662, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:95401649..95401655,-#_5be4114e7d0131f457d60e83d77a108d | p3@ENST00000463799 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:57525935..57525942,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:57525935..57525942, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:160189282..160189289,+#_5be4114e7d0131f457d60e83d77a108d | p38@RAPGEF2 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:103235211..103235247,+#_5be4114e7d0131f457d60e83d77a108d | p@chr2:103235211..103235247, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr15:71685918..71685922,-#_5be4114e7d0131f457d60e83d77a108d | p@chr15:71685918..71685922, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:97961686..97961696,-#_5be4114e7d0131f457d60e83d77a108d | p@chr8:97961686..97961696, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:125547084..125547089,+#_5be4114e7d0131f457d60e83d77a108d | p@chr6:125547084..125547089, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:107955476..107955508,-#_5be4114e7d0131f457d60e83d77a108d | p@chr4:107955476..107955508, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:194808375..194808396,+#_5be4114e7d0131f457d60e83d77a108d | p@chr3:194808375..194808396, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr18:10085504..10085505,+#_5be4114e7d0131f457d60e83d77a108d | p@chr18:10085504..10085505, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:54101133..54101144,+#_5be4114e7d0131f457d60e83d77a108d | p@chr20:54101133..54101144, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:129704382..129704389,+#_5be4114e7d0131f457d60e83d77a108d | p@chr10:129704382..129704389, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr1:168756079..168756087,+#_5be4114e7d0131f457d60e83d77a108d | p3@ENST00000420691 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr4:3838289..3838308,-#_5be4114e7d0131f457d60e83d77a108d | p@chr4:3838289..3838308, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:144618112..144618116,+#_5be4114e7d0131f457d60e83d77a108d | p4@NBPF8 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:192805413..192805418,+#_5be4114e7d0131f457d60e83d77a108d | p@chr2:192805413..192805418, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr8:98051049..98051058,-#_5be4114e7d0131f457d60e83d77a108d | p@chr8:98051049..98051058, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr16:7354636..7354645,-#_5be4114e7d0131f457d60e83d77a108d | p@chr16:7354636..7354645, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:76563913..76563916,+#_5be4114e7d0131f457d60e83d77a108d | p@chr13:76563913..76563916, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr10:129703363..129703373,+#_5be4114e7d0131f457d60e83d77a108d | p@chr10:129703363..129703373, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:168756151..168756165,+#_5be4114e7d0131f457d60e83d77a108d | p2@ENST00000420691 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:46124855..46124858,+#_5be4114e7d0131f457d60e83d77a108d | p@chr12:46124855..46124858, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr9:17454025..17454033,+#_5be4114e7d0131f457d60e83d77a108d | p@chr9:17454025..17454033, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:86703134..86703137,-#_5be4114e7d0131f457d60e83d77a108d | p@chr3:86703134..86703137, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:220594700..220594702,+#_5be4114e7d0131f457d60e83d77a108d | p6@ENST00000442416 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:64762702..64762707,+#_5be4114e7d0131f457d60e83d77a108d | p@chr6:64762702..64762707, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:42142040..42142055,+#_5be4114e7d0131f457d60e83d77a108d | p@chr11:42142040..42142055, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:82723188..82723191,-#_5be4114e7d0131f457d60e83d77a108d | p@chr10:82723188..82723191, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:85893922..85893940,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:85893922..85893940, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:186548894..186548902,+#_5be4114e7d0131f457d60e83d77a108d | p@chr3:186548894..186548902, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:8803669..8803680,-#_5be4114e7d0131f457d60e83d77a108d | p@chr2:8803669..8803680, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr21:26151976..26151979,+#_5be4114e7d0131f457d60e83d77a108d | p@chr21:26151976..26151979, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:79974020..79974025,+#_5be4114e7d0131f457d60e83d77a108d | p@chr17:79974020..79974025, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:39140393..39140399,-#_5be4114e7d0131f457d60e83d77a108d | p3@KRT40 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:219599419..219599426,-#_5be4114e7d0131f457d60e83d77a108d | p@chr1:219599419..219599426, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:76688920..76688924,+#_5be4114e7d0131f457d60e83d77a108d | p@chr13:76688920..76688924, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:84651827..84651832,-#_5be4114e7d0131f457d60e83d77a108d | p@chr7:84651827..84651832, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:97626499..97626505,-#_5be4114e7d0131f457d60e83d77a108d | p@chr2:97626499..97626505, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:120383546..120383560,+#_5be4114e7d0131f457d60e83d77a108d | p@chr7:120383546..120383560, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:95401928..95401936,-#_5be4114e7d0131f457d60e83d77a108d | p3@ENST00000494840, p3@uc003dro.1 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:135170047..135170048,+#_5be4114e7d0131f457d60e83d77a108d | p@chr2:135170047..135170048, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:60958049..60958051,-#_5be4114e7d0131f457d60e83d77a108d | p@chr14:60958049..60958051, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr19:46531131..46531136,+#_5be4114e7d0131f457d60e83d77a108d | p@chr19:46531131..46531136, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:97626375..97626385,-#_5be4114e7d0131f457d60e83d77a108d | p@chr2:97626375..97626385, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr18:10085504..10085505,+#_5be4114e7d0131f457d60e83d77a108d | p@chr18:10085504..10085505, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr10:29213612..29213644,+#_5be4114e7d0131f457d60e83d77a108d | p@chr10:29213612..29213644, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:78360522..78360543,+#_5be4114e7d0131f457d60e83d77a108d | p@chr3:78360522..78360543, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr14:60194070..60194083,-#_5be4114e7d0131f457d60e83d77a108d | p25@RTN1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr11:31093041..31093047,-#_5be4114e7d0131f457d60e83d77a108d | p@chr11:31093041..31093047, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:57127818..57127825,+#_5be4114e7d0131f457d60e83d77a108d | p@chr14:57127818..57127825, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:79765099..79765103,+#_5be4114e7d0131f457d60e83d77a108d | p29@GNAI1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:95133382..95133389,-#_5be4114e7d0131f457d60e83d77a108d | p@chr13:95133382..95133389, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr16:7354636..7354645,-#_5be4114e7d0131f457d60e83d77a108d | p@chr16:7354636..7354645, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr2:234862436..234862439,+#_5be4114e7d0131f457d60e83d77a108d | p16@TRPM8 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr9:17454052..17454060,+#_5be4114e7d0131f457d60e83d77a108d | p@chr9:17454052..17454060, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr6:23637711..23637717,-#_5be4114e7d0131f457d60e83d77a108d | p@chr6:23637711..23637717, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr15:36739964..36739979,-#_5be4114e7d0131f457d60e83d77a108d | p@chr15:36739964..36739979, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:86703154..86703166,-#_5be4114e7d0131f457d60e83d77a108d | p@chr3:86703154..86703166, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:220594710..220594720,+#_5be4114e7d0131f457d60e83d77a108d | p3@ENST00000442416 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr12:41186960..41186982,-#_5be4114e7d0131f457d60e83d77a108d | p@chr12:41186960..41186982, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr1:100110807..100110818,+#_5be4114e7d0131f457d60e83d77a108d | p@chr1:100110807..100110818, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr14:60194267..60194275,-#_5be4114e7d0131f457d60e83d77a108d | p20@RTN1 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:98073725..98073731,-#_5be4114e7d0131f457d60e83d77a108d | p@chr8:98073725..98073731, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr8:38441630..38441635,+#_5be4114e7d0131f457d60e83d77a108d | p@chr8:38441630..38441635, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr6:141715304..141715307,+#_5be4114e7d0131f457d60e83d77a108d | p@chr6:141715304..141715307, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr4:139019174..139019198,-#_5be4114e7d0131f457d60e83d77a108d | p@chr4:139019174..139019198, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr11:67402354..67402359,-#_5be4114e7d0131f457d60e83d77a108d | p@chr11:67402354..67402359, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr2:91776712..91776739,+#_5be4114e7d0131f457d60e83d77a108d | p@chr2:91776712..91776739, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr17:79974020..79974025,+#_5be4114e7d0131f457d60e83d77a108d | p@chr17:79974020..79974025, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr17:39140393..39140399,-#_5be4114e7d0131f457d60e83d77a108d | p3@KRT40 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr12:84126726..84126727,-#_5be4114e7d0131f457d60e83d77a108d | p@chr12:84126726..84126727, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr5:33650078..33650111,-#_5be4114e7d0131f457d60e83d77a108d | p@chr5:33650078..33650111, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr17:70940275..70940283,+#_5be4114e7d0131f457d60e83d77a108d | p@chr17:70940275..70940283, + |
