CL:0000306: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=crystallin accumulating cell | |name=crystallin accumulating cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:32, 12 September 2014
| Name: | crystallin accumulating cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: | "lens cell" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000325(stuff accumulating cell) |
|---|
Children
| is a: | CL:0002222 (vertebrate lens cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Mouse (Mus musculus)
- 10647-109A8 (lens epithelial cell line:SRA 01/04)
- 11529-119I8 (Lens Epithelial Cells, donor1)
- 11609-120I7 (Lens Epithelial Cells, donor2)
- 11690-122I7 (Lens Epithelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000306 (crystallin accumulating cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_b6ae962fa4c590104cbf8224cb6ba097 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_b6ae962fa4c590104cbf8224cb6ba097 | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_58eb098e89882725c6e4acfbded13217 | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_58eb098e89882725c6e4acfbded13217 | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_602976f82bd9a6459408e8c9361d87d9 | p1@LIM2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_602976f82bd9a6459408e8c9361d87d9 | p1@LIM2 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_a0156de55808f43ec693912960003612 | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_a0156de55808f43ec693912960003612 | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_51b9267196bf715576d3608bedc0baa7 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_51b9267196bf715576d3608bedc0baa7 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_51b9267196bf715576d3608bedc0baa7 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_51b9267196bf715576d3608bedc0baa7 | p@chr13:104778247..104778293, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_fffe83df1937c7d028740e7d741dab29 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_fffe83df1937c7d028740e7d741dab29 | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_fffe83df1937c7d028740e7d741dab29 | p2@CU686889 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_fffe83df1937c7d028740e7d741dab29 | p2@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_081de36320935aa20ce82cf039742f9e | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_081de36320935aa20ce82cf039742f9e | p1@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_081de36320935aa20ce82cf039742f9e | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_081de36320935aa20ce82cf039742f9e | p1@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_081de36320935aa20ce82cf039742f9e | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_081de36320935aa20ce82cf039742f9e | p@chr12:132475501..132475504, + |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_56d6c8cd9d3967edaa0ed2500e5f80b1 | p11@PAX6 |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_56d6c8cd9d3967edaa0ed2500e5f80b1 | p11@PAX6 |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_5a9f1f56acd83d7f2132600f633b9cdd | p1@CRYGS |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_5a9f1f56acd83d7f2132600f633b9cdd | p1@CRYGS |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_79ffb8ce21445c610c6913766c14048c | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_79ffb8ce21445c610c6913766c14048c | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_4ba9ef181805a2b62e6f915a7309cf1f | p7@PTPRU |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_4ba9ef181805a2b62e6f915a7309cf1f | p7@PTPRU |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_a59da596a58104c04dbbbc6f89ef38ea | p3@SIX6 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_a59da596a58104c04dbbbc6f89ef38ea | p3@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_2f372152444dbf8755aa57821cbf1fab | p4@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_2f372152444dbf8755aa57821cbf1fab | p4@SIX6 |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_5da4ac949c75b15b28a55c0583201427 | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_5da4ac949c75b15b28a55c0583201427 | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_eb57fa067ad696124b3bafc30b22290a | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_eb57fa067ad696124b3bafc30b22290a | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_66fa4f00e14b351c5704a0420619f5e3 | p1@CRYAA |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_66fa4f00e14b351c5704a0420619f5e3 | p1@CRYAA |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_d12ddfb08200968ff6555a208cf90be3 | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_d12ddfb08200968ff6555a208cf90be3 | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_17f94ce675dc2bbeb53aa11220517c1a | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_17f94ce675dc2bbeb53aa11220517c1a | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_23927c2cb3b242c6a32c7099d4719f64 | p13@NRCAM |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_23927c2cb3b242c6a32c7099d4719f64 | p13@NRCAM |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_aa7d8b3ac7924528d213d94d52cfe7df | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_aa7d8b3ac7924528d213d94d52cfe7df | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_94f488137c23c4123bd51740412c61ea | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_94f488137c23c4123bd51740412c61ea | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_223a1bd7352635e152e1c3be446c2d1a | p10@SIX3 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_223a1bd7352635e152e1c3be446c2d1a | p10@SIX3 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_1e14c948fe709b0f07389a5919de564b | p2@SIX6 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_1e14c948fe709b0f07389a5919de564b | p2@SIX6 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_76aefcf0a3eccb924c0c4cdfcaa5bb0f | p@chr19:40920692..40920700, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p30@PDP1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:72440726..72440736,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p19@DACH1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:85617064..85617073,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:464155..464205,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592512..44592521,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592750..44592758,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p4@CU686889 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:41727698..41727705,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr19:41727698..41727705, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:45769711..45769721,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr1:45769711..45769721, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:72440726..72440736,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p19@DACH1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr20:33903184..33903189,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p11@UQCC |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592358..44592365,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:73406056..73406065,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:45154282..45154288,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr3:156322310..156322314,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr3:156322310..156322314, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr9:100057272..100057276,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr7:123198284..123198329,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592626..44592635,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592788..44592807,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:17137781..17137792,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:86064794..86064797,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr1:115873480..115873484,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:45038620..45038622,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:124468141..124468176,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:693025..693036,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:10538258..10538282,+#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:45154282..45154288,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr2:45154282..45154288, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592750..44592758,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p4@CU686889 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:140656282..140656285,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_4ac91bbc22f6b2dd48820a338ab08b1e | p1@MIP |
