CL:0002092: Difference between revisions
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|located_in= | |located_in= | ||
|name=bone marrow cell | |name=bone marrow cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-07-22T04:48:15Z | |obo_creation_date=2010-07-22T04:48:15Z | ||
|part_of=UBERON:0002371 | |part_of=UBERON:0002371 | ||
Latest revision as of 16:40, 12 September 2014
| Name: | bone marrow cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell found in the bone marrow. This can include fibroblasts, macrophages, adipocytes, osteoblasts, osteoclasts, endothelial cells and hematopoietic cells." [GOC:tfm, ISBN:0618947256] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2010-07-22T04:48:15Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0001035(bone cell) |
|---|---|
| part_of: | UBERON:0002371(bone marrow) |
Children
| is a: | CL:0002540 (mesenchymal stem cell of the bone marrow),CL:1001610 (bone marrow hematopoietic cell) |
|---|---|
| derives from: | FF:0000020 (human CD133-positive progenitor cell- bone marrow derived sample),FF:0100583 (bone marrow cancer cell sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10773-110F8
- 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
- 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
- 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
... further results Mouse (Mus musculus)
- 10474-106I6 (myeloma cell line:PCM6)
- 10574-108B7
- 10704-109H2 (osteoclastoma cell line:Hs 706.T)
- 10711-109H9 (fibrous histiocytoma cell line:GCT TIB-223)
- 10731-110B2
- 10745-110C7
- 10773-110F8
- 11293-117A6 (Canine Mesenchymal stem cells - bone marrow derived, donor1)
- 11294-117A7 (Chicken Mesenchymal stem cells - bone marrow derived, donor1)
- 11296-117A9 (Rat Mesenchymal stem cells - bone marrow derived, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002092 (bone marrow cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:48992901..48992908,-#_d3a7586279dae6c3db5fa1e530b6b4c1 | p@chr6:48992901..48992908, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:48992901..48992908,-#_d3a7586279dae6c3db5fa1e530b6b4c1 | p@chr6:48992901..48992908, - |
| 6.04e-65 | FFCP PHASE2:Mm9::chr7:53967438..53967455,+#_8c4dc86b79c4b671b951a496ed34a4db | p@chr7:53967438..53967455, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr7:53967438..53967455,+#_8c4dc86b79c4b671b951a496ed34a4db | p@chr7:53967438..53967455, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr6:49001848..49001855,+#_5b3721343dc9890e60e32c0dd45759c9 | p@chr6:49001848..49001855, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:49001848..49001855,+#_5b3721343dc9890e60e32c0dd45759c9 | p@chr6:49001848..49001855, + |
| 2.47e-52 | FFCP PHASE1:Mm9::chr8:125950637..125950639,-#_7777d37304d68d582cb0a925a7d7a599 | p@chr8:125950637..125950639, - |
| 2.47e-52 | FFCP PHASE2:Mm9::chr8:125950637..125950639,-#_7777d37304d68d582cb0a925a7d7a599 | p@chr8:125950637..125950639, - |
| 3.69e-52 | FFCP PHASE1:Mm9::chr11:8475592..8475595,-#_52ac43dd35450c9e37b5d9f3bbde26ee | p@chr11:8475592..8475595, - |
| 3.69e-52 | FFCP PHASE2:Mm9::chr11:8475592..8475595,-#_52ac43dd35450c9e37b5d9f3bbde26ee | p@chr11:8475592..8475595, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr1:122401450..122401455,-#_855856eefd78e41399f840e86091e951 | p3@Marco |
| 5.51e-52 | FFCP PHASE1:Mm9::chr8:125956453..125956462,-#_855856eefd78e41399f840e86091e951 | p@chr8:125956453..125956462, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr8:125956453..125956462,-#_855856eefd78e41399f840e86091e951 | p@chr8:125956453..125956462, - |
| 5.51e-52 | FFCP PHASE1:Mm9::chr1:122401450..122401455,-#_855856eefd78e41399f840e86091e951 | p3@Marco |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48995347..48995356,+#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48995347..48995356, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr4:136452258..136452269,-#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr4:136452258..136452269, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48995364..48995370,+#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48995364..48995370, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr4:136452258..136452269,-#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr4:136452258..136452269, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48997291..48997298,+#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48997291..48997298, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48995347..48995356,+#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48995347..48995356, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48997996..48998006,-#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48997996..48998006, - |
| 1.18e-44 | FFCP PHASE1:Mm9::chr6:48995364..48995370,+#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48995364..48995370, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48997996..48998006,-#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48997996..48998006, - |
| 1.18e-44 | FFCP PHASE2:Mm9::chr6:48997291..48997298,+#_9b40b73db33fea8e5ba55b4297cbe925 | p@chr6:48997291..48997298, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr6:48997804..48997812,+#_22b6c32c78476f8ee918815d739b3608 | p@chr6:48997804..48997812, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr6:48997804..48997812,+#_22b6c32c78476f8ee918815d739b3608 | p@chr6:48997804..48997812, + |
| 3.27e-44 | FFCP PHASE1:Mm9::chr6:48995448..48995454,+#_6ffbda193d6f5afa022f61a7e41e2428 | p@chr6:48995448..48995454, + |
| 3.27e-44 | FFCP PHASE2:Mm9::chr6:48995448..48995454,+#_6ffbda193d6f5afa022f61a7e41e2428 | p@chr6:48995448..48995454, + |
| 6.41e-44 | FFCP PHASE2:Mm9::chr8:125956513..125956519,-#_3b56ee59800fabe4f19aa55dffbcacfd | p@chr8:125956513..125956519, - |
| 6.41e-44 | FFCP PHASE2:Mm9::chr11:69479320..69479327,-#_3b56ee59800fabe4f19aa55dffbcacfd | p@chr11:69479320..69479327, - |
| 6.41e-44 | FFCP PHASE1:Mm9::chr8:125951622..125951629,-#_3b56ee59800fabe4f19aa55dffbcacfd | p@chr8:125951622..125951629, - |
| 6.41e-44 | FFCP PHASE1:Mm9::chr11:69479320..69479327,-#_3b56ee59800fabe4f19aa55dffbcacfd | p@chr11:69479320..69479327, - |
| 6.41e-44 | FFCP PHASE2:Mm9::chr8:125951622..125951629,-#_3b56ee59800fabe4f19aa55dffbcacfd | p@chr8:125951622..125951629, - |
| 6.41e-44 | FFCP PHASE1:Mm9::chr8:125956513..125956519,-#_3b56ee59800fabe4f19aa55dffbcacfd | p@chr8:125956513..125956519, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr8:125956179..125956189,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr8:125956179..125956189, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr2:157944705..157944714,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr2:157944705..157944714, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr1:173159866..173159877,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr1:173159866..173159877, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr8:125952972..125952981,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr8:125952972..125952981, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr8:125952972..125952981,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr8:125952972..125952981, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr10:116715054..116715061,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr10:116715054..116715061, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr10:116715054..116715061,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr10:116715054..116715061, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr2:157944705..157944714,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr2:157944705..157944714, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr1:173159866..173159877,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr1:173159866..173159877, - |
| 8.97e-44 | FFCP PHASE1:Mm9::chr8:125956179..125956189,-#_c4bb3e8a4104668f92808da8b7a555f3 | p@chr8:125956179..125956189, - |
| 1.25e-43 | FFCP PHASE1:Mm9::chr8:125953346..125953349,-#_9fd1f5e8102b1c579faafd13b278afd8 | p@chr8:125953346..125953349, - |
| 1.25e-43 | FFCP PHASE1:Mm9::chr17:57501115..57501124,+#_9fd1f5e8102b1c579faafd13b278afd8 | p@chr17:57501115..57501124, + |
| 1.25e-43 | FFCP PHASE2:Mm9::chr8:125953346..125953349,-#_9fd1f5e8102b1c579faafd13b278afd8 | p@chr8:125953346..125953349, - |
| 1.25e-43 | FFCP PHASE2:Mm9::chr17:57501115..57501124,+#_9fd1f5e8102b1c579faafd13b278afd8 | p@chr17:57501115..57501124, + |
| 1.75e-43 | FFCP PHASE1:Mm9::chr6:122805870..122805874,-#_2e0f47b012747b97ebc2848be2a20a0e | p@chr6:122805870..122805874, - |
| 1.75e-43 | FFCP PHASE2:Mm9::chr6:122805870..122805874,-#_2e0f47b012747b97ebc2848be2a20a0e | p@chr6:122805870..122805874, - |
| 1.7e-39 | FFCP PHASE1:Mm9::chr8:124830874..124830875,+#_baa57e674c47201d260d47f8f93353e0 | p@chr8:124830874..124830875, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr8:124830874..124830875,+#_baa57e674c47201d260d47f8f93353e0 | p@chr8:124830874..124830875, + |
| 4.15e-39 | FFCP PHASE2:Mm9::chr10:93014574..93014575,+#_cfe595c953c5b1622ba32e2199a84830 | p@chr10:93014574..93014575, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr10:93014574..93014575,+#_cfe595c953c5b1622ba32e2199a84830 | p@chr10:93014574..93014575, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:48992877..48992890,-#_fb93638c630a679f208a0f9d1a4d74d2 | p@chr6:48992877..48992890, - |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:48992765..48992800,+#_fb93638c630a679f208a0f9d1a4d74d2 | p@chr6:48992765..48992800, + |
| 1.17e-38 | FFCP PHASE1:Mm9::chr6:48992877..48992890,-#_fb93638c630a679f208a0f9d1a4d74d2 | p@chr6:48992877..48992890, - |
| 1.17e-38 | FFCP PHASE2:Mm9::chr6:48992765..48992800,+#_fb93638c630a679f208a0f9d1a4d74d2 | p@chr6:48992765..48992800, + |
| 2.79e-38 | FFCP PHASE2:Mm9::chr8:125952310..125952320,+#_dd424ca65cd4c1f23d66c256116659e9 | p@chr8:125952310..125952320, + |
| 2.79e-38 | FFCP PHASE1:Mm9::chr8:125952310..125952320,+#_dd424ca65cd4c1f23d66c256116659e9 | p@chr8:125952310..125952320, + |
| 3.73e-38 | FFCP PHASE2:Mm9::chr8:125951545..125951559,-#_648c4123fc4d52681daefa08e74601ad | p@chr8:125951545..125951559, - |
| 3.73e-38 | FFCP PHASE1:Mm9::chr19:3941548..3941557,+#_648c4123fc4d52681daefa08e74601ad | p@chr19:3941548..3941557, + |
| 3.73e-38 | FFCP PHASE2:Mm9::chr19:3941548..3941557,+#_648c4123fc4d52681daefa08e74601ad | p@chr19:3941548..3941557, + |
| 3.73e-38 | FFCP PHASE1:Mm9::chr8:125952002..125952012,-#_648c4123fc4d52681daefa08e74601ad | p@chr8:125952002..125952012, - |
| 3.73e-38 | FFCP PHASE2:Mm9::chr8:125952002..125952012,-#_648c4123fc4d52681daefa08e74601ad | p@chr8:125952002..125952012, - |
| 3.73e-38 | FFCP PHASE1:Mm9::chr8:125951545..125951559,-#_648c4123fc4d52681daefa08e74601ad | p@chr8:125951545..125951559, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr6:82983194..82983205,-#_720c8a3f2d1da633cbf148d2e77193fe | p@chr6:82983194..82983205, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr6:82983194..82983205,-#_720c8a3f2d1da633cbf148d2e77193fe | p@chr6:82983194..82983205, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr8:125956332..125956339,-#_720c8a3f2d1da633cbf148d2e77193fe | p@chr8:125956332..125956339, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr8:125956332..125956339,-#_720c8a3f2d1da633cbf148d2e77193fe | p@chr8:125956332..125956339, - |
| 6.64e-38 | FFCP PHASE1:Mm9::chr8:125951458..125951466,-#_720c8a3f2d1da633cbf148d2e77193fe | p@chr8:125951458..125951466, - |
| 6.64e-38 | FFCP PHASE2:Mm9::chr8:125951458..125951466,-#_720c8a3f2d1da633cbf148d2e77193fe | p@chr8:125951458..125951466, - |
| 8.86e-38 | FFCP PHASE1:Mm9::chr17:45733632..45733648,-#_0411044200b7041daddd4d2bf20f4935 | p@chr17:45733632..45733648, - |
| 8.86e-38 | FFCP PHASE2:Mm9::chr17:45733632..45733648,-#_0411044200b7041daddd4d2bf20f4935 | p@chr17:45733632..45733648, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr3:87067625..87067636,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p2@Fcrls |
| 3.67e-34 | FFCP PHASE1:Mm9::chr4:136436677..136436688,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr4:136436677..136436688, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr4:136452194..136452198,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr4:136452194..136452198, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr3:87067576..87067584,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p3@Fcrls |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:48997958..48997979,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr6:48997958..48997979, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:48992884..48992893,+#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr6:48992884..48992893, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:49006588..49006597,+#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr6:49006588..49006597, + |
| 3.67e-34 | FFCP PHASE1:Mm9::chr3:87067625..87067636,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p2@Fcrls |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:48997958..48997979,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr6:48997958..48997979, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chrX:20505898..20505909,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chrX:20505898..20505909, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr6:49006588..49006597,+#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr6:49006588..49006597, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr4:136436677..136436688,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr4:136436677..136436688, - |
| 3.67e-34 | FFCP PHASE1:Mm9::chr6:48992884..48992893,+#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr6:48992884..48992893, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr3:87067576..87067584,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p3@Fcrls |
| 3.67e-34 | FFCP PHASE2:Mm9::chrX:20505898..20505909,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chrX:20505898..20505909, - |
| 3.67e-34 | FFCP PHASE2:Mm9::chr4:136452194..136452198,-#_c990cbdd3fa69491ef3ccc0e41d20124 | p@chr4:136452194..136452198, - |
| 6.12e-34 | FFCP PHASE1:Mm9::chr5:24046758..24046768,-#_d143cf1f740bf0fb79efc2a1c6083da1 | p3@Asb10 |
| 6.12e-34 | FFCP PHASE2:Mm9::chr5:24046758..24046768,-#_d143cf1f740bf0fb79efc2a1c6083da1 | p3@Asb10 |
| 6.12e-34 | FFCP PHASE2:Mm9::chr11:69478859..69478867,-#_d143cf1f740bf0fb79efc2a1c6083da1 | p@chr11:69478859..69478867, - |
| 6.12e-34 | FFCP PHASE1:Mm9::chr11:69478859..69478867,-#_d143cf1f740bf0fb79efc2a1c6083da1 | p@chr11:69478859..69478867, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr1:173164773..173164781,-#_c2cc61e7974f873eb55f156bbcd3b248 | p3@Fcer1g |
| 1.31e-33 | FFCP PHASE2:Mm9::chr1:173164773..173164781,-#_c2cc61e7974f873eb55f156bbcd3b248 | p3@Fcer1g |
| 1.69e-33 | FFCP PHASE2:Mm9::chr14:73572700..73572716,+#_e77076e0fdb83a602ca815ce602b620e | p@chr14:73572700..73572716, + |
| 1.69e-33 | FFCP PHASE1:Mm9::chr14:73572700..73572716,+#_e77076e0fdb83a602ca815ce602b620e | p@chr14:73572700..73572716, + |
| 3.61e-33 | FFCP PHASE2:Mm9::chr19:11679318..11679323,-#_529ef28c86f2aca88f43c12532d11e61 | p6@Ms4a6d |
| 3.61e-33 | FFCP PHASE1:Mm9::chr19:11679318..11679323,-#_529ef28c86f2aca88f43c12532d11e61 | p6@Ms4a6d |
