UBERON:0007806: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=connecting stalk | |name=connecting stalk | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 18:03, 12 September 2014
| Name: | connecting stalk | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A bridge of mesoderm connecting the caudal end of the young embryo with the trophoblastic tissues; the precursor of the umbilical cord." [Medical_Dictionary:http://medical-dictionary.thefreedictionary.com/] | ||
| Xrefs: |
| ||
| Comments: | todo - this is currently defined as a bridge of mesoderm, but in EHDAA2 is extraembryonic structure split into mesoderm and blood vessels |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000478(extraembryonic structure),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0005728(extraembryonic mesoderm) |
Children
| develops from: | UBERON:0002331 (umbilical cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007806 (connecting stalk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_14bb33615039afdf9052037a7d91f708 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_14bb33615039afdf9052037a7d91f708 | p@chr7:135931480..135931486, + |
| 2.16e-63 | FFCP PHASE1:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42 | p8@RAB7L1 |
| 2.16e-63 | FFCP PHASE2:Hg19::chr1:205744117..205744127,-#_f6db00c50a1cf20f61c2f87d1ff10a42 | p8@RAB7L1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:39574012..39574015,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:39574012..39574015, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:87324188..87324195,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:87324188..87324195, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:45926316..45926329,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:45926316..45926329, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:12548586..12548602,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:12548586..12548602, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148279057..148279078,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148279057..148279078, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:172807491..172807499,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:172807491..172807499, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr14:76957814..76957826,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr14:76957814..76957826, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chrX:109653507..109653518,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:109653507..109653518, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167748986..167748989,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167748986..167748989, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:53511711..53511720,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:53511711..53511720, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:111805635..111805642,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:111805635..111805642, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:75002215..75002221,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:75002215..75002221, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:135705366..135705371,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135705366..135705371, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:18179708..18179733,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18179708..18179733, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p17@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:31524425..31524444,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:31524425..31524444, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:74995216..74995247,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74995216..74995247, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:90524493..90524505,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr11:90524493..90524505, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chrX:10129292..10129306,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:10129292..10129306, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:150322254..150322291,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:150322254..150322291, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:24770576..24770594,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:24770576..24770594, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr5:77713534..77713543,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:77713534..77713543, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:129247710..129247730,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr11:129247710..129247730, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:74981579..74981583,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:74981579..74981583, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:207627342..207627349,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p3@CR2 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p6@VDAC3 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:10987850..10987854,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:10987850..10987854, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:15013428..15013456,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:15013428..15013456, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:56618992..56618998,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:56618992..56618998, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:109197952..109197957,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:109197952..109197957, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216568..228216578,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p15@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr17:1985278..1985290,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr17:1985278..1985290, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:59970765..59970787,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:59970765..59970787, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:130530197..130530209, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr20:33691683..33691699,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:33691683..33691699, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:106397597..106397610,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106397597..106397610, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:31150998..31151005,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:31150998..31151005, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:153038353..153038371,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:153038353..153038371, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:484706..484722,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:484706..484722, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr4:167982726..167982736,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167982726..167982736, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:135486487..135486491,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:135486487..135486491, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr5:146717844..146717861,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:146717844..146717861, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:74682916..74682923,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:74682916..74682923, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:15651894..15651904,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p4@NBAS |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:87324200..87324219,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:87324200..87324219, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:45926344..45926350,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:45926344..45926350, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:167944606..167944610,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:167944606..167944610, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:146004822..146004839,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:146004822..146004839, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:3149800..3149805,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:3149800..3149805, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr6:135486309..135486312,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:135486309..135486312, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:148296759..148296767,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148296759..148296767, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:148278743..148278751,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr2:148278743..148278751, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:135738522..135738525,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135738522..135738525, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:61574724..61574737,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:61574724..61574737, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:40021018..40021028,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr17:40021018..40021028, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:24770576..24770594,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:24770576..24770594, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:129247710..129247730,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr11:129247710..129247730, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:45954712..45954720,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p41@IGFBP3 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:75001932..75001956,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr9:75001932..75001956, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:182684840..182684848,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:182684840..182684848, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:33024873..33024877,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:33024873..33024877, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr19:10983266..10983276,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:10983266..10983276, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:168204286..168204299,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:168204286..168204299, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:53511768..53511784,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:53511768..53511784, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:135705408..135705462,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:135705408..135705462, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:18180040..18180058,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr21:18180040..18180058, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr4:85688154..85688161,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr4:85688154..85688161, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:169775687..169775690,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:169775687..169775690, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:130530197..130530209,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr12:130530197..130530209, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr8:56625901..56625913,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr8:56625901..56625913, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr2:228216588..228216609,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p10@MFF |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:18603318..18603327,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:18603318..18603327, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:138023154..138023161,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:138023154..138023161, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr5:162742836..162742845,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr5:162742836..162742845, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:111331533..111331540,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:111331533..111331540, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:49488858..49488869,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:49488858..49488869, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:111805643..111805655,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:111805643..111805655, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr2:228216837..228216846,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p17@MFF |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:61574724..61574737,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr10:61574724..61574737, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:111311854..111311862,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:111311854..111311862, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:30336924..30336935,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p15@KIAA1462 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr3:195306394..195306429,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p5@APOD |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:137816618..137816627,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:137816618..137816627, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr15:43323772..43323785, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chrX:10129363..10129369,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chrX:10129363..10129369, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr20:22771662..22771675,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr20:22771662..22771675, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr1:234631379..234631392,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr1:234631379..234631392, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr6:484679..484683,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr6:484679..484683, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr19:42682291..42682301,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr19:42682291..42682301, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr8:42248931..42248936,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p6@VDAC3 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr3:119279086..119279095,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr3:119279086..119279095, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr7:106397647..106397655,+#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr7:106397647..106397655, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr7:45954667..45954675,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p42@IGFBP3 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr15:43323772..43323785,-#_1ac1f7fee605574c13bf5a8740d5fd0f | p@chr15:43323772..43323785, - |
