FFCP PHASE1:Mm9::chr1:55283612..55283657,-: Difference between revisions
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{{FFCP|EntrezGene=74013|HGNC=|UniProt=Q8CHX7|association_with_transcript=0bp_to_ENSMUST00000027121,ENSMUST00000114428,ENSMUST00000132055,ENSMUST00000141107,NM_028713,uc007bag.1,uc007bah.1_5end|description=CAGE_peak_1_at_Rftn2_5end|id=chr1:55283612..55283657,-|ontology_enrichment_celltype=CL:0000055!2.64e-08!50;CL:0000393!3.57e-08!39;CL:0000211!3.57e-08!39;CL:0000221!7.19e-08!44;CL:0000133!7.19e-08!44;CL:0002319!7.54e-08!43;CL:0000540!2.43e-07!33;CL:0000047!2.43e-07!33;CL:0000031!2.43e-07!33;CL:0000404!2.43e-07!33;CL:0000107!9.83e-07!9|ontology_enrichment_celltype_v019_2=CL:0000393,2.83e-08,39;CL:0000211,2.83e-08,39;CL:0000221,8.38e-08,44;CL:0000133,8.38e-08,44;CL:0002319,8.83e-08,43;CL:0000540,1.98e-07,33;CL:0000047,1.98e-07,33;CL:0000031,1.98e-07,33;CL:0000404,1.98e-07,33;CL:0000107,8.18e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.63e-10!75;UBERON:0001016!4.63e-10!75;UBERON:0000468!7.70e-10!333;UBERON:0001017!1.67e-09!73;UBERON:0005743!1.67e-09!73;UBERON:0004121!5.50e-09!102;UBERON:0000924!5.50e-09!102;UBERON:0006601!5.50e-09!102;UBERON:0000010!3.66e-07!11;UBERON:0002410!9.83e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.87e-10,75;UBERON:0001017,1.77e-09,73;UBERON:0004121,2.42e-08,95;UBERON:0000924,2.42e-08,95;UBERON:0006601,2.42e-08,95;UBERON:0000010,3.00e-07,11;UBERON:0010314,8.04e-07,92;UBERON:0002410,8.18e-07,9|phase1_expression=5.92550734287738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,7.93149953246137,8.41428529121971,7.15832333430558,0.782391344348039,7.19483016055474,5.05278220289285,4.47188767870852,4.19959264876088,4.31257693094915,0,0,0,4.11615097657515,6.87680255853016,2.57836046138721,4.65327859977075,3.1739458756322,1.26766280701236,3.04960078862219,4.4464739805557,0,0,0,4.79360176829448,7.68436610643109,2.90330914463737,3.24014251996058,2.94454945891935,5.99867067247988,9.49734726091938,6.61450315760752,9.77623804386011,8.27296907949019,8.8092704799511,7.78892762319645,6.60508093001847,2.37395317914349,3.47653045689157,5.73004707612436,5.58365998002762,6.75315132038016,6.57032465440283,7.66034322231536,5.69486723196412,5.40558392893372,5.07365495332333,12.7715936580468,2.89864488701678,0.860423876981386,0.679971333707751,0,0.649776417447669,0,2.24711072210803,4.94247935476367,2.85764605063156,1.41335829804136,4.92951969218382,12.8326477414318,2.54805239706646,0,0,0,0,0.45673551887624,0.258937883647172,4.30482203287992,4.3371331691534,6.69824052286711,5.76538743140146,4.52167921657868,5.52666923537813,4.27266410520897,0.494389935468748,3.61498392299779,2.65383165584962,11.6472131962135,4.41683036920787,8.24287930329878,1.86391761218122,7.61230072230023,5.65506108396329,0,0.11981512450592,0,0,10.0359728401231,6.40500843946077,3.64397621127307,6.95297280769106,7.41574826257959,7.06479351502504,6.97637431191358,8.24898847187562,5.10068579501381,0.505445516867349,1.47309299120532,3.12289063110489,2.98872735763515,2.88099407688559,2.86339153887859,3.6739709541717,4.61209393025459,3.46696380870997,4.65666067330228,11.2095356325078,11.1572587299013,15.4836989264275,10.9597866213787,13.0682207136031,15.3230953269753,15.2278780941878,5.7719937377363,0,0,0,2.89976081549703,4.69052119962192,4.68161359798639,6.15536312521547,6.09969118416952,6.32495162838251,6.0458825635106,5.09719462659276,5.95503246072564,4.93679549740441,5.74586124276833,5.83695428730161,4.38599962275997,3.95190207523891,5.90508242545636,6.9395683026162,7.40913209130848,0,0.264450566663544,4.69234151177515,3.48355007790658,6.44337306610467,3.02525286935014,4.22518283305254,3.23383564391351,3.32170343081158,2.30578536613615,3.2673577144035,2.78539060857611,3.11942539390592,1.79763881730844,1.29682829924817,3.18626037206988,5.31070122668629,3.99869794134051,3.38123207019241,3.05476991767971,2.71533482034676,3.92760591385784,4.67950374719504,2.65698266363284,1.41298855057237,1.48076596706161,0,1.00107063429656,2.55526693647164,0.449724224769707,0.202860121388503,0.241177159752417,1.2731292589071,0.287696137450811,0.324270453550071,1.37280706594041,1.43768206527355,2.23284568601102,1.24815069245824,0.252578877947112,0.896987067609561,0.964887042726734,4.24932337383191,5.30575952957357,6.51859905768104,8.14776411720903,9.15291968325158,9.21284415929987,9.04565835366852,5.65887578787617,14.3447981136634,15.9454576547118,10.8429242687091,8.1931657357869,8.11619414769709,10.7040303350319,0,0,3.93411418415229,1.93155722413313,9.9541365792431,10.4318401067061,6.39346286969034,4.54447668967871,11.3582958989852,9.37052986311932,9.26320610251035,10.2756583119597,15.5959071857676,16.4184387857523,10.1202675418724,11.1057226006299,10.6727700045561,5.14114106274891,3.54850213020672,7.12262414669021,8.30723492703238,3.79431282836832,3.98235415019888,4.85561272309963,3.62788268357701,1.13163047853539,2.95301892880773,3.99665692327106,2.32585463851399,3.63533729477506,4.27796854061666,2.52829406348653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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:74013 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CHX7 | |||
|association_with_transcript=0bp_to_ENSMUST00000027121,ENSMUST00000114428,ENSMUST00000132055,ENSMUST00000141107,NM_028713,uc007bag.1,uc007bah.1_5end | |||
|cluster_id=chr1:55283612..55283657,- | |||
|description=CAGE_peak_1_at_Rftn2_5end | |||
|id=chr1:55283612..55283657,- | |||
|ontology_enrichment_celltype=CL:0000055!2.64e-08!50;CL:0000393!3.57e-08!39;CL:0000211!3.57e-08!39;CL:0000221!7.19e-08!44;CL:0000133!7.19e-08!44;CL:0002319!7.54e-08!43;CL:0000540!2.43e-07!33;CL:0000047!2.43e-07!33;CL:0000031!2.43e-07!33;CL:0000404!2.43e-07!33;CL:0000107!9.83e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.83e-08,39;CL:0000211,2.83e-08,39;CL:0000221,8.38e-08,44;CL:0000133,8.38e-08,44;CL:0002319,8.83e-08,43;CL:0000540,1.98e-07,33;CL:0000047,1.98e-07,33;CL:0000031,1.98e-07,33;CL:0000404,1.98e-07,33;CL:0000107,8.18e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.63e-10!75;UBERON:0001016!4.63e-10!75;UBERON:0000468!7.70e-10!333;UBERON:0001017!1.67e-09!73;UBERON:0005743!1.67e-09!73;UBERON:0004121!5.50e-09!102;UBERON:0000924!5.50e-09!102;UBERON:0006601!5.50e-09!102;UBERON:0000010!3.66e-07!11;UBERON:0002410!9.83e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.87e-10,75;UBERON:0001017,1.77e-09,73;UBERON:0004121,2.42e-08,95;UBERON:0000924,2.42e-08,95;UBERON:0006601,2.42e-08,95;UBERON:0000010,3.00e-07,11;UBERON:0010314,8.04e-07,92;UBERON:0002410,8.18e-07,9 | |||
|phase1_expression=5.92550734287738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46625541438102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,7.93149953246137,8.41428529121971,7.15832333430558,0.782391344348039,7.19483016055474,5.05278220289285,4.47188767870852,4.19959264876088,4.31257693094915,0,0,0,4.11615097657515,6.87680255853016,2.57836046138721,4.65327859977075,3.1739458756322,1.26766280701236,3.04960078862219,4.4464739805557,0,0,0,4.79360176829448,7.68436610643109,2.90330914463737,3.24014251996058,2.94454945891935,5.99867067247988,9.49734726091938,6.61450315760752,9.77623804386011,8.27296907949019,8.8092704799511,7.78892762319645,6.60508093001847,2.37395317914349,3.47653045689157,5.73004707612436,5.58365998002762,6.75315132038016,6.57032465440283,7.66034322231536,5.69486723196412,5.40558392893372,5.07365495332333,12.7715936580468,2.89864488701678,0.860423876981386,0.679971333707751,0,0.649776417447669,0,2.24711072210803,4.94247935476367,2.85764605063156,1.41335829804136,4.92951969218382,12.8326477414318,2.54805239706646,0,0,0,0,0.45673551887624,0.258937883647172,4.30482203287992,4.3371331691534,6.69824052286711,5.76538743140146,4.52167921657868,5.52666923537813,4.27266410520897,0.494389935468748,3.61498392299779,2.65383165584962,11.6472131962135,4.41683036920787,8.24287930329878,1.86391761218122,7.61230072230023,5.65506108396329,0,0.11981512450592,0,0,10.0359728401231,6.40500843946077,3.64397621127307,6.95297280769106,7.41574826257959,7.06479351502504,6.97637431191358,8.24898847187562,5.10068579501381,0.505445516867349,1.47309299120532,3.12289063110489,2.98872735763515,2.88099407688559,2.86339153887859,3.6739709541717,4.61209393025459,3.46696380870997,4.65666067330228,11.2095356325078,11.1572587299013,15.4836989264275,10.9597866213787,13.0682207136031,15.3230953269753,15.2278780941878,5.7719937377363,0,0,0,2.89976081549703,4.69052119962192,4.68161359798639,6.15536312521547,6.09969118416952,6.32495162838251,6.0458825635106,5.09719462659276,5.95503246072564,4.93679549740441,5.74586124276833,5.83695428730161,4.38599962275997,3.95190207523891,5.90508242545636,6.9395683026162,7.40913209130848,0,0.264450566663544,4.69234151177515,3.48355007790658,6.44337306610467,3.02525286935014,4.22518283305254,3.23383564391351,3.32170343081158,2.30578536613615,3.2673577144035,2.78539060857611,3.11942539390592,1.79763881730844,1.29682829924817,3.18626037206988,5.31070122668629,3.99869794134051,3.38123207019241,3.05476991767971,2.71533482034676,3.92760591385784,4.67950374719504,2.65698266363284,1.41298855057237,1.48076596706161,0,1.00107063429656,2.55526693647164,0.449724224769707,0.202860121388503,0.241177159752417,1.2731292589071,0.287696137450811,0.324270453550071,1.37280706594041,1.43768206527355,2.23284568601102,1.24815069245824,0.252578877947112,0.896987067609561,0.964887042726734,4.24932337383191,5.30575952957357,6.51859905768104,8.14776411720903,9.15291968325158,9.21284415929987,9.04565835366852,5.65887578787617,14.3447981136634,15.9454576547118,10.8429242687091,8.1931657357869,8.11619414769709,10.7040303350319,0,0,3.93411418415229,1.93155722413313,9.9541365792431,10.4318401067061,6.39346286969034,4.54447668967871,11.3582958989852,9.37052986311932,9.26320610251035,10.2756583119597,15.5959071857676,16.4184387857523,10.1202675418724,11.1057226006299,10.6727700045561,5.14114106274891,3.54850213020672,7.12262414669021,8.30723492703238,3.79431282836832,3.98235415019888,4.85561272309963,3.62788268357701,1.13163047853539,2.95301892880773,3.99665692327106,2.32585463851399,3.63533729477506,4.27796854061666,2.52829406348653,5.27093042874994,3.09406629744561,1.02131881726136,3.06103859853227,4.13947788104814,3.42939256050548,4.43350584105684,5.52943334566419,3.78462747384878,2.74018454203139,0.469343416127421,0.63549621259146,1.10264199027481,2.14352128823924,13.5630118424561,7.78036731573211,5.96861720015682,2.1338316966858,2.33184669303881,12.2380699326936,0.170870880797853,6.60437977482312,5.00025223898222,1.50694765603753,0.410082683163076,0.915112692826091,0.509935289981566,0,0.138199973804424,0,4.74503990371703,4.67634774391752,4.96824567780286,4.59994251231831,4.80397640241591,3.64133735239016,3.88471241909079,1.04702376793612,2.98114438571124,1.24267862617385,0.56369293868419,5.68162874967119,8.93475848468327,8.5558522871381,8.91202781996345,7.94093789806657,8.21500670520278,4.55715346953825,2.51662426621706,0.241584120826006,1.15212002503146,0.316011120628178,2.22997736819181,1.84879722896689,0.909445760844565,1.07416017400489,0.596044064343795,0.240390899039938,0.295379054349154,0.504832249740738,0.0762068066549998,0.100826185136841,0.0974578807397524,0,0.116876902181569,2.94749498699775,0,0,0,3.47741269257943,2.25218970541418,3.84618410961257,2.78678892802786,0,3.3885110557024,2.30162618253588,6.30185064783336,4.1244763762485,6.16574267793578,3.0215755895588,3.37511250115903,6.75481804836331,3.17199686288943,3.62432218226274,5.50072942196136,6.3843979744165,5.63420898988643,8.99494853152688,5.449942228327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| |||
|short_description=p1@Rftn2 | |||
}} |
Revision as of 18:41, 5 August 2015
Short description: | p1@Rftn2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rftn2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000027121, ENSMUST00000114428, ENSMUST00000132055, ENSMUST00000141107, NM_028713, uc007bag.1, uc007bah.1_5end |
EntrezGene: | 74013 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.83e-08 | 39 |
electrically active cell | 2.83e-08 | 39 |
ectodermal cell | 8.38e-08 | 44 |
neurectodermal cell | 8.38e-08 | 44 |
neural cell | 8.83e-08 | 43 |
neuron | 1.98e-07 | 33 |
neuronal stem cell | 1.98e-07 | 33 |
neuroblast | 1.98e-07 | 33 |
electrically signaling cell | 1.98e-07 | 33 |
autonomic neuron | 8.18e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.87e-10 | 75 |
central nervous system | 1.77e-09 | 73 |
ectoderm-derived structure | 2.42e-08 | 95 |
ectoderm | 2.42e-08 | 95 |
presumptive ectoderm | 2.42e-08 | 95 |
peripheral nervous system | 3.00e-07 | 11 |
structure with developmental contribution from neural crest | 8.04e-07 | 92 |
autonomic nervous system | 8.18e-07 | 9 |