FFCP PHASE2:Hg19::chr1:35220725..35220754,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2709 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4287 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2709 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4287 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=O95377 | ||
|association_with_transcript=4bp_to_NM_005268,uc001bxu.2_5end | |association_with_transcript=4bp_to_NM_005268,uc001bxu.2_5end | ||
|cluster_id=chr1:35220725..35220754,+ | |cluster_id=chr1:35220725..35220754,+ | ||
Latest revision as of 17:46, 17 September 2015
| Short description: | p2@GJB5 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_GJB5_5end |
| Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
| Association with transcript: | 4bp_to_NM_005268, uc001bxu.2_5end |
| EntrezGene: | GJB5 |
| HGNC: | 4287 |
| UniProt: | O95377 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@GJB5 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endo-epithelial cell | 2.30e-41 | 42 |
| epithelial cell | 1.72e-30 | 253 |
| endodermal cell | 2.49e-30 | 58 |
| epithelial cell of alimentary canal | 7.83e-25 | 20 |
| respiratory epithelial cell | 1.43e-22 | 13 |
| general ecto-epithelial cell | 9.56e-20 | 14 |
| acinar cell | 5.62e-14 | 5 |
| squamous epithelial cell | 1.15e-13 | 63 |
| transitional epithelial cell | 7.60e-13 | 4 |
| urothelial cell | 7.60e-13 | 4 |
Showing 1 to 10 of 39 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 9.46e-18 | 160 |
| endoderm | 9.46e-18 | 160 |
| presumptive endoderm | 9.46e-18 | 160 |
| respiratory system | 1.28e-16 | 74 |
| oral opening | 8.00e-16 | 22 |
| urothelium | 3.40e-15 | 5 |
| surface structure | 2.42e-14 | 99 |
| orifice | 3.77e-14 | 36 |
| mouth | 1.91e-13 | 29 |
| stomodeum | 1.91e-13 | 29 |
Showing 1 to 10 of 50 entries
| Ontology term | p-value | n |
|---|---|---|
| squamous cell carcinoma | 7.14e-28 | 14 |
Showing 1 to 1 of 1 entries
