FFCP PHASE1:Hg19::chr6:7541845..7541878,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1832 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=3052 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P15924 | ||
|association_with_transcript=0bp_to_ENST00000418664,NM_001008844,NM_004415,uc003mxp.1,uc003mxq.1_5end | |association_with_transcript=0bp_to_ENST00000418664,NM_001008844,NM_004415,uc003mxp.1,uc003mxq.1_5end | ||
|cluster_id=chr6:7541845..7541878,+ | |cluster_id=chr6:7541845..7541878,+ | ||
Latest revision as of 18:49, 19 September 2015
| Short description: | p2@DSP |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_DSP_5end |
| Coexpression cluster: | C4626_salivary_amniotic_choriocarcinoma_Keratinocyte_maxillary_cervical_esophagus |
| Association with transcript: | 0bp_to_ENST00000418664, NM_001008844, NM_004415, uc003mxp.1, uc003mxq.1_5end |
| EntrezGene: | DSP |
| HGNC: | 3052 |
| UniProt: | P15924 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@DSP |
|---|
0
50
100
150
200
250
300
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.94e-36 | 253 |
| endodermal cell | 6.06e-21 | 58 |
| endo-epithelial cell | 2.58e-18 | 42 |
| epithelial cell of alimentary canal | 6.59e-10 | 20 |
| respiratory epithelial cell | 2.32e-07 | 13 |
Showing 1 to 5 of 5 entries
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 5.80e-25 | 160 |
| endoderm | 5.80e-25 | 160 |
| presumptive endoderm | 5.80e-25 | 160 |
| digestive system | 2.54e-20 | 145 |
| digestive tract | 2.54e-20 | 145 |
| primitive gut | 2.54e-20 | 145 |
| subdivision of digestive tract | 2.70e-18 | 118 |
| foregut | 4.93e-15 | 87 |
| respiratory system | 1.81e-13 | 74 |
| subdivision of trunk | 7.00e-12 | 112 |
Showing 1 to 10 of 23 entries
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 2.74e-23 | 106 |
| cell type cancer | 1.68e-15 | 143 |
| adenocarcinoma | 9.46e-08 | 25 |
Showing 1 to 3 of 3 entries
