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MCL coexpression mm9:1961

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:31307868..31307869,-p@chr11:31307868..31307869
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Mm9::chr14:11009172..11009174,-p@chr14:11009172..11009174
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Mm9::chr5:138806836..138806838,-p1@ENSMUST00000121655
Mm9::chr6:49832069..49832073,-p@chr6:49832069..49832073
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Cell Type
Ontology termp-valuen
metabolising cell3.83e-075
endopolyploid cell3.83e-075
parenchymal cell3.83e-075
polyploid cell3.83e-075
hepatocyte3.83e-075

Uber Anatomy
Ontology termp-valuen
liver1.05e-3222
epithelial sac1.05e-3222
digestive gland1.05e-3222
epithelium of foregut-midgut junction1.05e-3222
anatomical boundary1.05e-3222
hepatobiliary system1.05e-3222
foregut-midgut junction1.05e-3222
hepatic diverticulum1.05e-3222
liver primordium1.05e-3222
septum transversum1.05e-3222
liver bud1.05e-3222
digestive tract diverticulum4.73e-3123
sac4.73e-3123
exocrine gland3.82e-2825
exocrine system3.82e-2825
trunk mesenchyme8.81e-1545
abdomen element3.82e-1349
abdominal segment element3.82e-1349
abdominal segment of trunk3.82e-1349
abdomen3.82e-1349
epithelial tube1.46e-1247
gut epithelium5.12e-1055
endocrine gland8.65e-1060
mesenchyme1.52e-0961
entire embryonic mesenchyme1.52e-0961
gland1.19e-0865
subdivision of trunk1.92e-0866
unilaminar epithelium1.48e-0766
endocrine system2.47e-0772
endo-epithelium5.01e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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