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UBERON:0005425

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Name:presumptive neural retina
Namespace:FANTOM
Definition:"Portion of tissue that is the inner layer of the optic cup and will become the neural retina." [ZFIN:curator]
Xrefs:
links:

EHDAA2:0001304
EMAPA:16675
TAO:0001071
VHOG:0000490

ZFA:0001071
Synonyms: "inner layer optic cup" EXACT [ZFA:0001071]
"optic cup inner layer" EXACT [EHDAA2:0001304]
"presumptive retinas" EXACT PLURAL [ZFA:0001071]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0006598(presumptive structure),UBERON:0010312(immature eye)
part_of:UBERON:0003072(optic cup)



Children

develops from:UBERON:0003902 (retinal neural layer)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005425 (presumptive neural retina), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_d49581a4c58d005b33fbe5b8ac84ab6cp@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_d7117695103e6fc3dcd0e53e92af2cc5p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_d7117695103e6fc3dcd0e53e92af2cc5p@chr4:127394496..127394500, -
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr6:121951983..121951986, +
2.55e-98FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:22000519..22000525, -
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_3ed8ef55777c3b623f5fc9b1f7764abfp2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_3ed8ef55777c3b623f5fc9b1f7764abfp18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr22:30951607..30951613, -
2.55e-98FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr15:36402459..36402465, -
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:133035182..133035195, -
2.55e-98FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:66170755..66170759, -
2.55e-98FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_3ed8ef55777c3b623f5fc9b1f7764abfp10@NELL1
2.55e-98FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:1414652..1414695, +
2.55e-98FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:1414652..1414695, +
2.55e-98FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:39827273..39827281, +
2.55e-98FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:59444098..59444102, +
2.55e-98FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_3ed8ef55777c3b623f5fc9b1f7764abfp18@TGFB3
2.55e-98FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_3ed8ef55777c3b623f5fc9b1f7764abfp4@SNORD111B
2.55e-98FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr4:188536760..188536764, -
2.55e-98FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr6:168558338..168558388, -
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:48479835..48479841, -
2.55e-98FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:103086717..103086724, +
2.55e-98FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:77789390..77789399, -
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_3ed8ef55777c3b623f5fc9b1f7764abfp25@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr4:188536760..188536764, -
2.55e-98FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:127992016..127992052, +
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abfp3@BC098451
2.55e-98FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:103086717..103086724, +
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr19:35978717..35978722, -
2.55e-98FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:109466651..109466653, +
2.55e-98FFCP PHASE2:Hg19::chr18:45498690..45498695,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr18:45498690..45498695, -
2.55e-98FFCP PHASE1:Hg19::chr16:89970522..89970530,+#_3ed8ef55777c3b623f5fc9b1f7764abfp9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr16:55740953..55740956,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:55740953..55740956, +
2.55e-98FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_3ed8ef55777c3b623f5fc9b1f7764abfp12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr10:22768515..22768517, +
2.55e-98FFCP PHASE1:Hg19::chr5:103200303..103200307,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:103200303..103200307, +
2.55e-98FFCP PHASE2:Hg19::chr5:109466651..109466653,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:109466651..109466653, +
2.55e-98FFCP PHASE2:Hg19::chr14:78718132..78718157,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr14:78718132..78718157, +
2.55e-98FFCP PHASE1:Hg19::chr1:44991346..44991355,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:44991346..44991355, +
2.55e-98FFCP PHASE2:Hg19::chr5:103200303..103200307,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr5:103200303..103200307, +
2.55e-98FFCP PHASE1:Hg19::chr14:106176908..106176916,-#_3ed8ef55777c3b623f5fc9b1f7764abfp3@BC098451
2.55e-98FFCP PHASE1:Hg19::chr16:19586229..19586233,+#_3ed8ef55777c3b623f5fc9b1f7764abfp12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chrX:25873187..25873209,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chrX:25873187..25873209, +
2.55e-98FFCP PHASE2:Hg19::chr16:89970522..89970530,+#_3ed8ef55777c3b623f5fc9b1f7764abfp9@TCF25
2.55e-98FFCP PHASE2:Hg19::chr1:44991346..44991355,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr1:44991346..44991355, +
2.55e-98FFCP PHASE1:Hg19::chr3:181328346..181328351,+#_3ed8ef55777c3b623f5fc9b1f7764abfp22@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr11:2435409..2435443,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr16:55740953..55740956,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr16:55740953..55740956, +
2.55e-98FFCP PHASE1:Hg19::chr3:77060783..77060789,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:77060783..77060789, +
2.55e-98FFCP PHASE2:Hg19::chr12:59444098..59444102,+#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr12:59444098..59444102, +
2.55e-98FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:165170873..165170919, -
2.55e-98FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr2:165170873..165170919, -
2.55e-98FFCP PHASE1:Hg19::chr3:131712314..131712315,-#_3ed8ef55777c3b623f5fc9b1f7764abfp@chr3:131712314..131712315, -

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