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UBERON:0001905

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Name:pineal body
Definition:"The pineal body is an unpaired glandular organ subdivision shaped somewhat like a pine cone. It is attached on the midline near the posterior and habenular commissures of the epithalamus." [FMA:62033, Wikipedia:Pineal_body]
Xrefs:
links:

AAO:0010549
ABA:PIN
BM:P
BTO:0001067
EFO:0000865
EHDAA:7523
EHDAA2:0001466
EMAPA:18778
EV:0100221
FMA:62033
GAID:453
galen:PinealGland
[1]
MA:0000175
MAT:0000448
MESH:A.06.407.635
ncithesaurus:Pineal_Gland
NIF_GrossAnatomy:birnlex_1184
NIF_GrossAnatomy:nlx_anat_1010009
OpenCyc:Mx4rv2FMGpwpEbGdrcN5Y29ycA
SCTID:181126002
VHOG:0000051
XAO:0000160

ZFA:0000019
Synonyms: "corpus pineale" EXACT []
"epiphysis" RELATED [ZFA:0000019]
"epiphysis cerebri" RELATED [Wikipedia:Epiphysis_cerebri]
"glandula pinealis" EXACT [FMA:TA]
"glandula pinealis" EXACT [FMA:62033, FMA:TA]
"pineal gland" EXACT [FMA:62033]
"pineal organ" EXACT [ZFA:0000019]
Comments:AO notes: part of midbrain in HOG, but this is inconsistent with ABA.
Alt_id: UBERON:FMA_62033-MA_0000175-XAO_0000160
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002757(regional part of epithalamus),UBERON:0003296(gland of diencephalon),UBERON:0010134(secretory circumventricular organ)
part_of:UBERON:0001899(epithalamus)



Children

derives from:FF:0010160 (human pineal gland - adult sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001905 (pineal body), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.29e-195FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_842633804e145228aa5bd41c0ffb3985p32@DMD
3.29e-195FFCP PHASE1:Hg19::chr2:17075761..17075773,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17075761..17075773, +
3.29e-195FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473983..135473986, -
3.29e-195FFCP PHASE2:Hg19::chr9:37692930..37692936,+#_842633804e145228aa5bd41c0ffb3985p@chr9:37692930..37692936, +
3.29e-195FFCP PHASE2:Hg19::chr8:135515989..135515991,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515989..135515991, +
3.29e-195FFCP PHASE1:Hg19::chr11:18053180..18053192,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18053180..18053192, -
3.29e-195FFCP PHASE1:Hg19::chr8:87751918..87751928,-#_842633804e145228aa5bd41c0ffb3985p@chr8:87751918..87751928, -
3.29e-195FFCP PHASE1:Hg19::chr8:116127086..116127103,+#_842633804e145228aa5bd41c0ffb3985p@chr8:116127086..116127103, +
3.29e-195FFCP PHASE1:Hg19::chr7:120842768..120842790,-#_842633804e145228aa5bd41c0ffb3985p@chr7:120842768..120842790, -
3.29e-195FFCP PHASE1:Hg19::chr13:56628524..56628547,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628524..56628547, -
3.29e-195FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000514282
3.29e-195FFCP PHASE2:Hg19::chr13:52650530..52650533,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650530..52650533, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942376..100942381,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942376..100942381, -
3.29e-195FFCP PHASE1:Hg19::chr17:74463567..74463574,+#_842633804e145228aa5bd41c0ffb3985p4@AANAT
3.29e-195FFCP PHASE2:Hg19::chr12:49621641..49621650,+#_842633804e145228aa5bd41c0ffb3985p22@TUBA1C
3.29e-195FFCP PHASE2:Hg19::chr11:18063669..18063678,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18063669..18063678, -
3.29e-195FFCP PHASE1:Hg19::chr5:119799576..119799585,+#_842633804e145228aa5bd41c0ffb3985p10@PRR16
3.29e-195FFCP PHASE2:Hg19::chr2:17141934..17141935,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17141934..17141935, +
3.29e-195FFCP PHASE1:Hg19::chr16:18066399..18066411,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr1:57975398..57975401,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57975398..57975401, +
3.29e-195FFCP PHASE2:Hg19::chr7:9202487..9202498,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9202487..9202498, -
3.29e-195FFCP PHASE2:Hg19::chr12:6954834..6954841,+#_842633804e145228aa5bd41c0ffb3985p9@GNB3
3.29e-195FFCP PHASE1:Hg19::chr5:136328601..136328607,-#_842633804e145228aa5bd41c0ffb3985p25@SPOCK1
3.29e-195FFCP PHASE1:Hg19::chr12:55422293..55422300,+#_842633804e145228aa5bd41c0ffb3985p@chr12:55422293..55422300, +
3.29e-195FFCP PHASE2:Hg19::chr3:54952412..54952416,-#_842633804e145228aa5bd41c0ffb3985p@chr3:54952412..54952416, -
3.29e-195FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_842633804e145228aa5bd41c0ffb3985p@chr17:55484129..55484139, +
3.29e-195FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_842633804e145228aa5bd41c0ffb3985p@chr7:129084265..129084288, -
3.29e-195FFCP PHASE2:Hg19::chr8:99033409..99033415,+#_842633804e145228aa5bd41c0ffb3985p16@MATN2
3.29e-195FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_842633804e145228aa5bd41c0ffb3985p38@KCNIP4
3.29e-195FFCP PHASE2:Hg19::chr2:17040158..17040170,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17040158..17040170, +
3.29e-195FFCP PHASE2:Hg19::chr1:154540028..154540037,+#_842633804e145228aa5bd41c0ffb3985p4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr16:17930871..17930877,-#_842633804e145228aa5bd41c0ffb3985p@chr16:17930871..17930877, -
3.29e-195FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57907030..57907050, +
3.29e-195FFCP PHASE2:Hg19::chr7:9178350..9178369,-#_842633804e145228aa5bd41c0ffb3985p@chr7:9178350..9178369, -
3.29e-195FFCP PHASE1:Hg19::chr9:37668094..37668097,+#_842633804e145228aa5bd41c0ffb3985p6@FRMPD1
3.29e-195FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135515957..135515964, +
3.29e-195FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_842633804e145228aa5bd41c0ffb3985p4@ENST00000439998
3.29e-195FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000457625
3.29e-195FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_842633804e145228aa5bd41c0ffb3985p@chr7:9782665..9782674, +
3.29e-195FFCP PHASE1:Hg19::chr13:21399081..21399087,+#_842633804e145228aa5bd41c0ffb3985p@chr13:21399081..21399087, +
3.29e-195FFCP PHASE2:Hg19::chr3:139938385..139938390,+#_842633804e145228aa5bd41c0ffb3985p@chr3:139938385..139938390, +
3.29e-195FFCP PHASE1:Hg19::chr9:88661694..88661709,-#_842633804e145228aa5bd41c0ffb3985p@chr9:88661694..88661709, -
3.29e-195FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_842633804e145228aa5bd41c0ffb3985p11@SRRM3
3.29e-195FFCP PHASE1:Hg19::chr12:81859007..81859036,+#_842633804e145228aa5bd41c0ffb3985p@chr12:81859007..81859036, +
3.29e-195FFCP PHASE2:Hg19::chr1:204667243..204667248,+#_842633804e145228aa5bd41c0ffb3985p@chr1:204667243..204667248, +
3.29e-195FFCP PHASE1:Hg19::chr1:99860786..99860791,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99860786..99860791, -
3.29e-195FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135499228..135499260, -
3.29e-195FFCP PHASE2:Hg19::chr8:135522475..135522486,-#_842633804e145228aa5bd41c0ffb3985p16@ZFAT
3.29e-195FFCP PHASE1:Hg19::chr12:49621658..49621666,+#_842633804e145228aa5bd41c0ffb3985p21@TUBA1C
3.29e-195FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067951..18067954, -
3.29e-195FFCP PHASE2:Hg19::chr2:4224059..4224062,-#_842633804e145228aa5bd41c0ffb3985p@chr2:4224059..4224062, -
3.29e-195FFCP PHASE2:Hg19::chr7:120842768..120842790,-#_842633804e145228aa5bd41c0ffb3985p@chr7:120842768..120842790, -
3.29e-195FFCP PHASE2:Hg19::chr13:56628524..56628547,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628524..56628547, -
3.29e-195FFCP PHASE1:Hg19::chr3:101038595..101038604,-#_842633804e145228aa5bd41c0ffb3985p@chr3:101038595..101038604, -
3.29e-195FFCP PHASE2:Hg19::chr11:18067959..18067962,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18067959..18067962, -
3.29e-195FFCP PHASE2:Hg19::chr2:108604491..108604499,+#_842633804e145228aa5bd41c0ffb3985p8@SLC5A7
3.29e-195FFCP PHASE1:Hg19::chr18:56963093..56963105,-#_842633804e145228aa5bd41c0ffb3985p@chr18:56963093..56963105, -
3.29e-195FFCP PHASE1:Hg19::chr16:1210506..1210513,-#_842633804e145228aa5bd41c0ffb3985p@chr16:1210506..1210513, -
3.29e-195FFCP PHASE1:Hg19::chr1:154540028..154540037,+#_842633804e145228aa5bd41c0ffb3985p4@CHRNB2
3.29e-195FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_842633804e145228aa5bd41c0ffb3985p9@GNB3
3.29e-195FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473876..135473885, -
3.29e-195FFCP PHASE2:Hg19::chr8:135504353..135504365,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504353..135504365, -
3.29e-195FFCP PHASE2:Hg19::chr16:18066399..18066411,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066399..18066411, -
3.29e-195FFCP PHASE2:Hg19::chr9:137539895..137539904,+#_842633804e145228aa5bd41c0ffb3985p@chr9:137539895..137539904, +
3.29e-195FFCP PHASE1:Hg19::chr12:56582028..56582062,+#_842633804e145228aa5bd41c0ffb3985p@chr12:56582028..56582062, +
3.29e-195FFCP PHASE2:Hg19::chr3:107545606..107545631,-#_842633804e145228aa5bd41c0ffb3985p@chr3:107545606..107545631, -
3.29e-195FFCP PHASE2:Hg19::chr8:135473063..135473075,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473063..135473075, -
3.29e-195FFCP PHASE2:Hg19::chr7:129084265..129084288,-#_842633804e145228aa5bd41c0ffb3985p@chr7:129084265..129084288, -
3.29e-195FFCP PHASE2:Hg19::chr12:81859007..81859036,+#_842633804e145228aa5bd41c0ffb3985p@chr12:81859007..81859036, +
3.29e-195FFCP PHASE2:Hg19::chr12:55422293..55422300,+#_842633804e145228aa5bd41c0ffb3985p@chr12:55422293..55422300, +
3.29e-195FFCP PHASE1:Hg19::chr1:204667243..204667248,+#_842633804e145228aa5bd41c0ffb3985p@chr1:204667243..204667248, +
3.29e-195FFCP PHASE1:Hg19::chr16:18066319..18066337,-#_842633804e145228aa5bd41c0ffb3985p@chr16:18066319..18066337, -
3.29e-195FFCP PHASE2:Hg19::chr16:17930871..17930877,-#_842633804e145228aa5bd41c0ffb3985p@chr16:17930871..17930877, -
3.29e-195FFCP PHASE1:Hg19::chr11:18041194..18041197,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041194..18041197, -
3.29e-195FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_842633804e145228aa5bd41c0ffb3985p@chr1:57907030..57907050, +
3.29e-195FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_842633804e145228aa5bd41c0ffb3985p10@CNGB3
3.29e-195FFCP PHASE1:Hg19::chr8:135521466..135521470,+#_842633804e145228aa5bd41c0ffb3985p@chr8:135521466..135521470, +
3.29e-195FFCP PHASE2:Hg19::chr11:18041199..18041200,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18041199..18041200, -
3.29e-195FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_842633804e145228aa5bd41c0ffb3985p@chr7:9782665..9782674, +
3.29e-195FFCP PHASE2:Hg19::chr13:21399081..21399087,+#_842633804e145228aa5bd41c0ffb3985p@chr13:21399081..21399087, +
3.29e-195FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_842633804e145228aa5bd41c0ffb3985p11@SRRM3
3.29e-195FFCP PHASE2:Hg19::chr8:135473748..135473753,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135473748..135473753, -
3.29e-195FFCP PHASE2:Hg19::chr16:1210506..1210513,-#_842633804e145228aa5bd41c0ffb3985p@chr16:1210506..1210513, -
3.29e-195FFCP PHASE1:Hg19::chr12:99734965..99734976,-#_842633804e145228aa5bd41c0ffb3985p@chr12:99734965..99734976, -
3.29e-195FFCP PHASE2:Hg19::chr5:134871183..134871197,-#_842633804e145228aa5bd41c0ffb3985p3@NEUROG1
3.29e-195FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_842633804e145228aa5bd41c0ffb3985p@chr2:17185958..17185998, +
3.29e-195FFCP PHASE2:Hg19::chr1:99860786..99860791,-#_842633804e145228aa5bd41c0ffb3985p@chr1:99860786..99860791, -
3.29e-195FFCP PHASE1:Hg19::chr8:135504337..135504342,-#_842633804e145228aa5bd41c0ffb3985p@chr8:135504337..135504342, -
3.29e-195FFCP PHASE1:Hg19::chr3:17085717..17085733,-#_842633804e145228aa5bd41c0ffb3985p2@PLCL2-AS1
3.29e-195FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_842633804e145228aa5bd41c0ffb3985p2@ENST00000414895
3.29e-195FFCP PHASE1:Hg19::chr6:33087873..33087886,-#_842633804e145228aa5bd41c0ffb3985p@chr6:33087873..33087886, -
3.29e-195FFCP PHASE2:Hg19::chr5:119867229..119867240,+#_842633804e145228aa5bd41c0ffb3985p9@PRR16
3.29e-195FFCP PHASE1:Hg19::chrX:33146637..33146644,-#_842633804e145228aa5bd41c0ffb3985p35@DMD
3.29e-195FFCP PHASE2:Hg19::chr10:18580269..18580290,+#_842633804e145228aa5bd41c0ffb3985p@chr10:18580269..18580290, +
3.29e-195FFCP PHASE1:Hg19::chr11:18063669..18063678,-#_842633804e145228aa5bd41c0ffb3985p@chr11:18063669..18063678, -
3.29e-195FFCP PHASE1:Hg19::chr8:87751931..87751947,-#_842633804e145228aa5bd41c0ffb3985p@chr8:87751931..87751947, -
3.29e-195FFCP PHASE1:Hg19::chr7:120969099..120969104,+#_842633804e145228aa5bd41c0ffb3985p3@WNT16
3.29e-195FFCP PHASE1:Hg19::chr13:56628548..56628553,-#_842633804e145228aa5bd41c0ffb3985p@chr13:56628548..56628553, -
3.29e-195FFCP PHASE2:Hg19::chr13:52650541..52650548,-#_842633804e145228aa5bd41c0ffb3985p@chr13:52650541..52650548, -
3.29e-195FFCP PHASE1:Hg19::chr3:100942645..100942655,-#_842633804e145228aa5bd41c0ffb3985p@chr3:100942645..100942655, -

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