Personal tools

UBERON:0002037

From FANTOM5_SSTAR

Revision as of 17:14, 15 June 2012 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:cerebellum
Definition:"Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func=detail&aid=3291162&group_id=76834&atid=1205376, ISBN:3764351209, MESH:A.08.186.211.132.810.428.200, ZFA:0000100]
Xrefs:
links:

AAO:0010485
ABA:CB
BM:CB
BTO:0000232
EFO:0000327
EHDAA2:0000232
EMAPA:17787
EV:0100293
FMA:67944
GAID:595
[ 200px-Cerebellum_NIH.png 200px-Cerebellum_NIH.png]
MA:0000198
MAT:0000110
MESH:A.08.186.211.132.810.428.200
MIAA:0000110
ncithesaurus:Cerebellum
NIF_GrossAnatomy:birnlex_1489
OpenCyc:Mx4rvl1eipwpEbGdrcN5Y29ycA
SCTID:180924008
TAO:0000100
VHOG:0000024
XAO:0003098

ZFA:0000100
Synonyms: "epencephalon-1" EXACT []
Comments:note that almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem
Alt_id: UBERON:FMA_67944-FMA_78469-MA_0000196-MA_0000198-MIAA_0000110-XAO_0003098-XAO_0003099-ZFA_0000100-ZFA_0000110
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002616(regional part of brain),UBERON:0002680(regional part of metencephalon)
develops_from:UBERON:0006215(rhombic lip)
part_of:UBERON:0001895(metencephalon),UBERON:0002028(hindbrain)



Children

is a:FF:0010166 (cerebellum - adult donor),FF:10357-105E6 (cerebellum, newborn, donor10223)
derives from:FF:0010083 (human cerebellum - adult sample),FF:0011182 (mouse cerebellum- embryo E11 sample),FF:0011183 (mouse cerebellum- embryo E12 sample),FF:0011184 (mouse cerebellum- embryo E13 sample),FF:0011185 (mouse cerebellum- embryo E14 sample),FF:0011186 (mouse cerebellum- embryo E15 sample),FF:0011187 (mouse cerebellum- embryo E16 sample),FF:0011188 (mouse cerebellum- embryo E17 sample),FF:0011189 (mouse cerebellum- embryo E18 sample),FF:0011190 (mouse cerebellum- neonate N00 sample),FF:0011191 (mouse cerebellum- neonate N03 sample),FF:0011192 (mouse cerebellum- neonate N06 sample),FF:0011193 (mouse cerebellum- neonate N09 sample),FF:0011250 (mouse cerebellum- neonate N30 sample),FF:0011276 (mouse cerebellum - adult sample)
part of:FF:0000196 (mouse astrocyte of cerebellum sample),CL:0001031 (cerebellar granule cell),CL:0002603 (astrocyte of the cerebellum),CL:1001611 (cerebellar neuron)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002037 (cerebellum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr22:17891551..17891560,+#_aff29aac9db5e49c42391e86e26372f2p@chr22:17891551..17891560, +
1.83e-98FFCP PHASE1:Hg19::chr4:718943..718952,+#_aff29aac9db5e49c42391e86e26372f2p10@PCGF3
1.83e-98FFCP PHASE1:Hg19::chr16:49313357..49313362,-#_aff29aac9db5e49c42391e86e26372f2p@chr16:49313357..49313362, -
1.83e-98FFCP PHASE2:Hg19::chr14:79746650..79746659,+#_aff29aac9db5e49c42391e86e26372f2p23@NRXN3
1.83e-98FFCP PHASE1:Hg19::chr20:45062215..45062225,+#_aff29aac9db5e49c42391e86e26372f2p4@AK054905
1.83e-98FFCP PHASE2:Hg19::chr1:228602576..228602587,-#_aff29aac9db5e49c42391e86e26372f2p1@CU689740
1.83e-98FFCP PHASE1:Hg19::chr7:49815147..49815153,+#_aff29aac9db5e49c42391e86e26372f2p5@VWC2
1.83e-98FFCP PHASE1:Hg19::chr16:87377029..87377039,-#_aff29aac9db5e49c42391e86e26372f2p@chr16:87377029..87377039, -
1.83e-98FFCP PHASE1:Hg19::chr14:77582845..77582854,+#_aff29aac9db5e49c42391e86e26372f2p10@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr15:81489344..81489353,+#_aff29aac9db5e49c42391e86e26372f2p31@IL16
1.83e-98FFCP PHASE2:Hg19::chr13:100633107..100633110,+#_aff29aac9db5e49c42391e86e26372f2p7@AK298232
1.83e-98FFCP PHASE2:Hg19::chr1:24526024..24526028,+#_aff29aac9db5e49c42391e86e26372f2p@chr1:24526024..24526028, +
1.83e-98FFCP PHASE2:Hg19::chr2:149835072..149835078,+#_aff29aac9db5e49c42391e86e26372f2p39@KIF5C
1.83e-98FFCP PHASE2:Hg19::chr2:202634440..202634472,-#_aff29aac9db5e49c42391e86e26372f2p@chr2:202634440..202634472, -
1.83e-98FFCP PHASE1:Hg19::chr1:244355180..244355201,+#_aff29aac9db5e49c42391e86e26372f2p@chr1:244355180..244355201, +
1.83e-98FFCP PHASE2:Hg19::chr6:72922572..72922582,+#_aff29aac9db5e49c42391e86e26372f2p30@RIMS1
1.83e-98FFCP PHASE2:Hg19::chr5:161113132..161113181,+#_aff29aac9db5e49c42391e86e26372f2p9@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr4:93225020..93225031,+#_aff29aac9db5e49c42391e86e26372f2p@chr4:93225020..93225031, +
1.83e-98FFCP PHASE1:Hg19::chr19:6501203..6501206,-#_aff29aac9db5e49c42391e86e26372f2p@chr19:6501203..6501206, -
1.83e-98FFCP PHASE1:Hg19::chr17:72667207..72667214,+#_aff29aac9db5e49c42391e86e26372f2p12@RAB37
1.83e-98FFCP PHASE1:Hg19::chr6:31334809..31334819,-#_aff29aac9db5e49c42391e86e26372f2p1@DHFRP2
1.83e-98FFCP PHASE2:Hg19::chr3:22108366..22108373,-#_aff29aac9db5e49c42391e86e26372f2p@chr3:22108366..22108373, -
1.83e-98FFCP PHASE1:Hg19::chr8:140666585..140666599,-#_aff29aac9db5e49c42391e86e26372f2p@chr8:140666585..140666599, -
1.83e-98FFCP PHASE2:Hg19::chr14:60048980..60048989,-#_aff29aac9db5e49c42391e86e26372f2p@chr14:60048980..60048989, -
1.83e-98FFCP PHASE2:Hg19::chr7:155302128..155302137,-#_aff29aac9db5e49c42391e86e26372f2p@chr7:155302128..155302137, -
1.83e-98FFCP PHASE1:Hg19::chr3:9165885..9165918,+#_aff29aac9db5e49c42391e86e26372f2p@chr3:9165885..9165918, +
1.83e-98FFCP PHASE1:Hg19::chr3:22108225..22108233,-#_aff29aac9db5e49c42391e86e26372f2p@chr3:22108225..22108233, -
1.83e-98FFCP PHASE1:Hg19::chr2:39116996..39117003,+#_aff29aac9db5e49c42391e86e26372f2p7@ARHGEF33
1.83e-98FFCP PHASE2:Hg19::chr22:32022290..32022297,-#_aff29aac9db5e49c42391e86e26372f2p30@PISD
1.83e-98FFCP PHASE2:Hg19::chr21:32624517..32624531,-#_aff29aac9db5e49c42391e86e26372f2p@chr21:32624517..32624531, -
1.83e-98FFCP PHASE1:Hg19::chr4:117873869..117873879,-#_aff29aac9db5e49c42391e86e26372f2p@chr4:117873869..117873879, -
1.83e-98FFCP PHASE2:Hg19::chr21:47314143..47314154,-#_aff29aac9db5e49c42391e86e26372f2p@chr21:47314143..47314154, -
1.83e-98FFCP PHASE2:Hg19::chr13:113624941..113624962,-#_aff29aac9db5e49c42391e86e26372f2p@chr13:113624941..113624962, -
1.83e-98FFCP PHASE1:Hg19::chr21:47268058..47268079,+#_aff29aac9db5e49c42391e86e26372f2p5@PCBP3
1.83e-98FFCP PHASE1:Hg19::chr15:81489302..81489313,+#_aff29aac9db5e49c42391e86e26372f2p20@IL16
1.83e-98FFCP PHASE1:Hg19::chr3:147139238..147139247,+#_aff29aac9db5e49c42391e86e26372f2p26@ZIC1
1.83e-98FFCP PHASE1:Hg19::chr1:1953233..1953242,-#_aff29aac9db5e49c42391e86e26372f2p@chr1:1953233..1953242, -
1.83e-98FFCP PHASE2:Hg19::chr7:29162047..29162055,+#_aff29aac9db5e49c42391e86e26372f2p@chr7:29162047..29162055, +
1.83e-98FFCP PHASE1:Hg19::chr16:4731350..4731363,+#_aff29aac9db5e49c42391e86e26372f2p@chr16:4731350..4731363, +
1.83e-98FFCP PHASE1:Hg19::chr21:32624498..32624505,-#_aff29aac9db5e49c42391e86e26372f2p@chr21:32624498..32624505, -
1.83e-98FFCP PHASE1:Hg19::chr16:23419354..23419361,+#_aff29aac9db5e49c42391e86e26372f2p@chr16:23419354..23419361, +
1.83e-98FFCP PHASE1:Hg19::chr11:108438755..108438763,-#_aff29aac9db5e49c42391e86e26372f2p20@EXPH5
1.83e-98FFCP PHASE2:Hg19::chr8:17579288..17579296,-#_aff29aac9db5e49c42391e86e26372f2p69@MTUS1
1.83e-98FFCP PHASE2:Hg19::chr16:3656616..3656628,-#_aff29aac9db5e49c42391e86e26372f2p@chr16:3656616..3656628, -
1.83e-98FFCP PHASE2:Hg19::chr4:166678786..166678822,-#_aff29aac9db5e49c42391e86e26372f2p@chr4:166678786..166678822, -
1.83e-98FFCP PHASE2:Hg19::chr17:72673771..72673779,-#_aff29aac9db5e49c42391e86e26372f2p@chr17:72673771..72673779, -
1.83e-98FFCP PHASE1:Hg19::chr17:72667619..72667628,+#_aff29aac9db5e49c42391e86e26372f2p9@RAB37
1.83e-98FFCP PHASE2:Hg19::chr2:39892073..39892078,+#_aff29aac9db5e49c42391e86e26372f2p25@TMEM178
1.83e-98FFCP PHASE2:Hg19::chr5:161112767..161112774,+#_aff29aac9db5e49c42391e86e26372f2p5@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr19:6501203..6501206,-#_aff29aac9db5e49c42391e86e26372f2p@chr19:6501203..6501206, -
1.83e-98FFCP PHASE2:Hg19::chr6:34041419..34041429,-#_aff29aac9db5e49c42391e86e26372f2p@chr6:34041419..34041429, -
1.83e-98FFCP PHASE2:Hg19::chr7:29237354..29237369,+#_aff29aac9db5e49c42391e86e26372f2p32@CHN2
1.83e-98FFCP PHASE2:Hg19::chr3:22062741..22062742,-#_aff29aac9db5e49c42391e86e26372f2p@chr3:22062741..22062742, -
1.83e-98FFCP PHASE1:Hg19::chr22:32022290..32022297,-#_aff29aac9db5e49c42391e86e26372f2p30@PISD
1.83e-98FFCP PHASE2:Hg19::chr16:87376991..87377002,-#_aff29aac9db5e49c42391e86e26372f2p@chr16:87376991..87377002, -
1.83e-98FFCP PHASE1:Hg19::chrX:71131124..71131135,+#_aff29aac9db5e49c42391e86e26372f2p@chrX:71131124..71131135, +
1.83e-98FFCP PHASE1:Hg19::chr9:109460295..109460307,+#_aff29aac9db5e49c42391e86e26372f2p@chr9:109460295..109460307, +
1.83e-98FFCP PHASE2:Hg19::chr11:108438755..108438763,-#_aff29aac9db5e49c42391e86e26372f2p20@EXPH5
1.83e-98FFCP PHASE1:Hg19::chr22:51137783..51137794,+#_aff29aac9db5e49c42391e86e26372f2p@chr22:51137783..51137794, +
1.83e-98FFCP PHASE2:Hg19::chr12:72667119..72667130,+#_aff29aac9db5e49c42391e86e26372f2p16@TRHDE
1.83e-98FFCP PHASE2:Hg19::chr1:1953233..1953242,-#_aff29aac9db5e49c42391e86e26372f2p@chr1:1953233..1953242, -
1.83e-98FFCP PHASE2:Hg19::chr20:45061929..45061936,+#_aff29aac9db5e49c42391e86e26372f2p8@AK054905
1.83e-98FFCP PHASE1:Hg19::chr1:228602576..228602587,-#_aff29aac9db5e49c42391e86e26372f2p1@CU689740
1.83e-98FFCP PHASE1:Hg19::chr16:3656599..3656608,-#_aff29aac9db5e49c42391e86e26372f2p@chr16:3656599..3656608, -
1.83e-98FFCP PHASE1:Hg19::chr14:77582887..77582896,+#_aff29aac9db5e49c42391e86e26372f2p12@TMEM63C
1.83e-98FFCP PHASE2:Hg19::chr11:65999312..65999320,+#_aff29aac9db5e49c42391e86e26372f2p30@PACS1
1.83e-98FFCP PHASE1:Hg19::chr18:5197269..5197276,-#_aff29aac9db5e49c42391e86e26372f2p7@C18orf42
1.83e-98FFCP PHASE1:Hg19::chr6:72922523..72922536,+#_aff29aac9db5e49c42391e86e26372f2p26@RIMS1
1.83e-98FFCP PHASE1:Hg19::chr14:60048980..60048989,-#_aff29aac9db5e49c42391e86e26372f2p@chr14:60048980..60048989, -
1.83e-98FFCP PHASE1:Hg19::chr13:113624941..113624962,-#_aff29aac9db5e49c42391e86e26372f2p@chr13:113624941..113624962, -
1.83e-98FFCP PHASE1:Hg19::chr1:24526024..24526028,+#_aff29aac9db5e49c42391e86e26372f2p@chr1:24526024..24526028, +
1.83e-98FFCP PHASE2:Hg19::chr5:161113284..161113295,+#_aff29aac9db5e49c42391e86e26372f2p7@GABRA6
1.83e-98FFCP PHASE1:Hg19::chr11:31822160..31822172,-#_aff29aac9db5e49c42391e86e26372f2p30@PAX6
1.83e-98FFCP PHASE1:Hg19::chr2:149835072..149835078,+#_aff29aac9db5e49c42391e86e26372f2p39@KIF5C
1.83e-98FFCP PHASE2:Hg19::chr7:128518888..128518897,-#_aff29aac9db5e49c42391e86e26372f2p@chr7:128518888..128518897, -
1.83e-98FFCP PHASE2:Hg19::chr4:93225050..93225057,+#_aff29aac9db5e49c42391e86e26372f2p11@GRID2
1.83e-98FFCP PHASE1:Hg19::chr19:6501233..6501243,-#_aff29aac9db5e49c42391e86e26372f2p@chr19:6501233..6501243, -
1.83e-98FFCP PHASE2:Hg19::chr14:24898471..24898476,-#_aff29aac9db5e49c42391e86e26372f2p13@CBLN3
1.83e-98FFCP PHASE2:Hg19::chr17:72667483..72667484,+#_aff29aac9db5e49c42391e86e26372f2p18@RAB37
1.83e-98FFCP PHASE1:Hg19::chr6:70647902..70647917,+#_aff29aac9db5e49c42391e86e26372f2p@chr6:70647902..70647917, +
1.83e-98FFCP PHASE2:Hg19::chr3:22108417..22108426,-#_aff29aac9db5e49c42391e86e26372f2p@chr3:22108417..22108426, -
1.83e-98FFCP PHASE2:Hg19::chr18:66918040..66918047,-#_aff29aac9db5e49c42391e86e26372f2p@chr18:66918040..66918047, -
1.83e-98FFCP PHASE2:Hg19::chr7:119913819..119913824,-#_aff29aac9db5e49c42391e86e26372f2p@chr7:119913819..119913824, -
1.83e-98FFCP PHASE2:Hg19::chr5:161112675..161112678,+#_aff29aac9db5e49c42391e86e26372f2p10@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr11:122733093..122733100,+#_aff29aac9db5e49c42391e86e26372f2p8@CRTAM
1.83e-98FFCP PHASE1:Hg19::chr7:14025135..14025147,-#_aff29aac9db5e49c42391e86e26372f2p42@ETV1
1.83e-98FFCP PHASE2:Hg19::chr4:89680444..89680453,-#_aff29aac9db5e49c42391e86e26372f2p31@FAM13A
1.83e-98FFCP PHASE2:Hg19::chr11:64146203..64146207,+#_aff29aac9db5e49c42391e86e26372f2p@chr11:64146203..64146207, +
1.83e-98FFCP PHASE1:Hg19::chr3:22108366..22108373,-#_aff29aac9db5e49c42391e86e26372f2p@chr3:22108366..22108373, -
1.83e-98FFCP PHASE1:Hg19::chr2:202634440..202634472,-#_aff29aac9db5e49c42391e86e26372f2p@chr2:202634440..202634472, -
1.83e-98FFCP PHASE1:Hg19::chr14:79746650..79746659,+#_aff29aac9db5e49c42391e86e26372f2p23@NRXN3
1.83e-98FFCP PHASE1:Hg19::chr5:161113132..161113181,+#_aff29aac9db5e49c42391e86e26372f2p9@GABRA6
1.83e-98FFCP PHASE2:Hg19::chr18:59415396..59415427,+#_aff29aac9db5e49c42391e86e26372f2p1@uc002lig.1
1.83e-98FFCP PHASE1:Hg19::chr4:93225020..93225031,+#_aff29aac9db5e49c42391e86e26372f2p@chr4:93225020..93225031, +
1.83e-98FFCP PHASE2:Hg19::chr3:147141170..147141181,-#_aff29aac9db5e49c42391e86e26372f2p@chr3:147141170..147141181, -
1.83e-98FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_aff29aac9db5e49c42391e86e26372f2p@chr19:17992758..17992791, +
1.83e-98FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_aff29aac9db5e49c42391e86e26372f2p@chr18:8783620..8783627, +
1.83e-98FFCP PHASE2:Hg19::chr17:39553443..39553452,-#_aff29aac9db5e49c42391e86e26372f2p2@KRT31
1.83e-98FFCP PHASE1:Hg19::chr7:128520567..128520578,-#_aff29aac9db5e49c42391e86e26372f2p@chr7:128520567..128520578, -
1.83e-98FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_aff29aac9db5e49c42391e86e26372f2p@chr21:47314143..47314154, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002037&oldid=1832739"