Personal tools

MCL coexpression mm9:60

From FANTOM5_SSTAR

Revision as of 16:09, 10 October 2012 by Autoedit (talk | contribs) (Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005622;intracellular;3.00859808215338e-06;107652,106763,319211,14924,17184,19731,66682,72999,56350,56535,80751,18707,1811...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:115910684..115910700,-p3@Kcnmb4
Mm9::chr10:127496152..127496209,+p2@Gm9769
p2@LOC100048119
p2@Ptges3
Mm9::chr10:13272946..13272959,-p4@Pex3
Mm9::chr10:13272961..13272972,-p6@Pex3
Mm9::chr10:20672388..20672399,+p2@Ahi1
Mm9::chr10:53471000..53471072,-p1@Fam184a
Mm9::chr10:70022161..70022178,-p@chr10:70022161..70022178
-
Mm9::chr10:77875694..77875766,-p1@Rrp1
Mm9::chr10:80500003..80500040,-p2@Slc39a3
Mm9::chr10:80522879..80522949,-p1@Sgta
Mm9::chr10:80568663..80568677,+p2@Map2k2
Mm9::chr10:93498534..93498561,-p2@Vezt
Mm9::chr11:102994617..102994646,+p2@Hexim2
Mm9::chr11:105898181..105898238,+p1@Dcaf7
Mm9::chr11:106474305..106474321,-p3@Tex2
Mm9::chr11:109287254..109287266,+p5@Amz2
Mm9::chr11:116976447..116976500,+p2@Sec14l1
Mm9::chr11:120209493..120209503,-p@chr11:120209493..120209503
-
Mm9::chr11:120209518..120209559,-p@chr11:120209518..120209559
-
Mm9::chr11:53380863..53380930,+p1@Kif3a
Mm9::chr11:61668520..61668527,-p4@Ulk2
Mm9::chr11:61668528..61668571,-p2@Ulk2
Mm9::chr11:62545367..62545412,-p1@Zfp287
Mm9::chr11:69715350..69715396,+p1@Neurl4
Mm9::chr11:83116143..83116305,+p1@Ap2b1
Mm9::chr11:86887575..86887618,-p2@Gdpd1
Mm9::chr11:86887622..86887633,-p3@Gdpd1
Mm9::chr11:86940674..86940766,+p2@Trim37
Mm9::chr12:103981835..103981898,-p2@Moap1
Mm9::chr12:111933974..111934018,-p3@Hsp90aa1
Mm9::chr12:111934070..111934086,-p6@Hsp90aa1
Mm9::chr12:111934458..111934472,-p8@Hsp90aa1
Mm9::chr12:11462858..11462864,+p1@Rad51ap2
Mm9::chr12:13256004..13256030,-p2@Ddx1
Mm9::chr12:14158877..14158888,-p2@Fam84a
Mm9::chr12:21423452..21423466,-p2@LOC100503129
p2@Ywhaq
Mm9::chr12:21549145..21549176,+p@chr12:21549145..21549176
+
Mm9::chr12:27845363..27845387,-p2@ENSMUST00000063754
Mm9::chr12:33832620..33832635,+p4@Atxn7l1
Mm9::chr12:52930723..52930790,-p5@Hectd1
Mm9::chr12:60112962..60112979,-p3@Sec23a
Mm9::chr12:60112983..60113021,-p2@Sec23a
Mm9::chr12:77505372..77505383,+p3@Hspa2
Mm9::chr12:80273596..80273659,-p2@Vti1b
Mm9::chr12:81537394..81537443,-p3@Dcaf5
Mm9::chr12:88288381..88288431,+p2@2310044G17Rik
Mm9::chr13:100114575..100114586,-p@chr13:100114575..100114586
-
Mm9::chr13:107812463..107812474,-p3@Kif2a
Mm9::chr13:41345210..41345232,+p1@BC024659
Mm9::chr13:41345245..41345319,+p3@BC024659
Mm9::chr13:42147117..42147142,+p3@Hivep1
Mm9::chr13:55585061..55585114,-p2@Dbn1
Mm9::chr13:59658591..59658707,-p1@Agtpbp1
Mm9::chr13:59658715..59658733,-p2@Agtpbp1
Mm9::chr14:116394165..116394169,+p@chr14:116394165..116394169
+
Mm9::chr14:22569747..22569758,+p2@Samd8
Mm9::chr14:27783744..27783782,-p2@Appl1
Mm9::chr14:32064640..32064716,+p1@Bap1
Mm9::chr14:55482892..55482988,-p1@Homez
Mm9::chr14:56364484..56364495,-p4@Dhrs1
Mm9::chr14:62175583..62175618,-p2@6330409N04Rik
Mm9::chr14:62175620..62175634,-p3@6330409N04Rik
Mm9::chr14:62175718..62175727,-p6@6330409N04Rik
Mm9::chr14:64162751..64162762,-p4@Mtmr9
Mm9::chr14:64162768..64162828,-p1@Mtmr9
Mm9::chr15:39029247..39029262,+p@chr15:39029247..39029262
+
Mm9::chr15:71558315..71558339,-p3@Fam135b
Mm9::chr15:72891434..72891526,-p1@Trappc9
Mm9::chr15:79489319..79489363,-p1@4933432B09Rik
Mm9::chr15:8119031..8119066,+p1@2410089E03Rik
Mm9::chr15:81230225..81230262,-p3@St13
Mm9::chr15:81230483..81230523,-p4@St13
Mm9::chr15:83341291..83341336,-p1@Ttll1
Mm9::chr15:84388206..84388305,-p1@Ldoc1l
Mm9::chr15:9001398..9001473,+p@chr15:9001398..9001473
+
Mm9::chr15:98593658..98593669,-p3@Arf3
Mm9::chr15:99082360..99082399,-p1@Mcrs1
Mm9::chr16:15594602..15594624,-p1@Gm6565
p1@Ube2v2
Mm9::chr16:65563029..65563092,+p@chr16:65563029..65563092
+
Mm9::chr16:90220953..90220970,+p2@Sod1
Mm9::chr17:27085561..27085585,+p@chr17:27085561..27085585
+
Mm9::chr17:27760386..27760440,-p1@Nudt3
Mm9::chr17:28314075..28314159,+p1@Zfp523
Mm9::chr17:45570511..45570532,-p5@Cdc5l
Mm9::chr17:46390866..46390927,+p1@Gm88
Mm9::chr17:46624590..46624631,-p1@Ttbk1
Mm9::chr18:23200142..23200172,-p1@Nol4
Mm9::chr18:25327363..25327385,-p4@5730494M16Rik
Mm9::chr18:35721834..35721851,+p2@Matr3
Mm9::chr18:35721854..35721914,+p1@Matr3
Mm9::chr18:35722088..35722144,+p@chr18:35722088..35722144
+
Mm9::chr18:35731638..35731653,+p@chr18:35731638..35731653
+
Mm9::chr18:46471465..46471488,-p2@Ccdc112
Mm9::chr18:61896994..61897030,-p@chr18:61896994..61897030
-
Mm9::chr19:31157472..31157536,+p1@Cstf2t
Mm9::chr19:3979984..3980016,+p@chr19:3979984..3980016
+
Mm9::chr19:42160828..42160865,-p1@Morn4
Mm9::chr19:45857711..45857736,-p3@Mgea5
Mm9::chr19:46226995..46227004,+p2@Gbf1
Mm9::chr19:46470212..46470246,-p1@Actr1a
Mm9::chr19:46647586..46647697,-p1@Arl3
Mm9::chr19:5490475..5490487,+p2@Cfl1
p2@LOC100048522
Mm9::chr19:60019499..60019541,-p2@Rab11fip2
Mm9::chr19:60019550..60019581,-p1@Rab11fip2
Mm9::chr1:121734043..121734132,-p2@Ptpn4
Mm9::chr1:123224353..123224380,-p2@Insig2
Mm9::chr1:138242651..138242722,-p1@Camsap2
Mm9::chr1:152239924..152239979,+p2@Tpr
Mm9::chr1:154613411..154613449,-p2@Rgl1
Mm9::chr1:162723039..162723100,-p3@Rabgap1l
Mm9::chr1:163081115..163081119,+p@chr1:163081115..163081119
+
Mm9::chr1:165709725..165709762,+p3@Kifap3
Mm9::chr1:16646989..16647003,-p2@LOC100045866
p3@Tceb1
Mm9::chr1:172105090..172105132,-p4@Uap1
Mm9::chr1:179726794..179726804,-p5@Adss
Mm9::chr1:179726805..179726808,-p9@Adss
Mm9::chr1:179726824..179726831,-p8@Adss
Mm9::chr1:37486916..37486925,-p4@6330578E17Rik
Mm9::chr1:57434437..57434533,+p1@1700066M21Rik
Mm9::chr1:60099936..60100019,-p1@Ica1l
Mm9::chr1:63223625..63223628,+p4@Eef1b2
Mm9::chr1:67085398..67085446,-p1@Lancl1
Mm9::chr1:75139336..75139347,+p3@Fam134a
Mm9::chr1:75139387..75139398,+p4@Fam134a
Mm9::chr1:75139402..75139411,+p5@Fam134a
Mm9::chr1:75176800..75176883,-p2@Abcb6
Mm9::chr1:75232975..75233004,+p4@Dnajb2
Mm9::chr2:103867914..103867937,+p2@Fbxo3
Mm9::chr2:120676164..120676181,-p3@Ttbk2
Mm9::chr2:131178593..131178625,-p2@Rnf24
Mm9::chr2:134469891..134469902,-p4@Tmx4
Mm9::chr2:140221182..140221201,+p1@Macrod2
Mm9::chr2:150574772..150574883,+p1@Entpd6
Mm9::chr2:21127346..21127408,+p1@Thnsl1
Mm9::chr2:26244890..26244901,+p2@Pmpca
Mm9::chr2:28980492..28980568,+p2@Setx
Mm9::chr2:29904347..29904411,-p1@Wdr34
Mm9::chr2:29921939..29921981,+p1@Gm9531
p1@LOC100504508
p2@Set
Mm9::chr2:30271287..30271294,-p11@Crat
Mm9::chr2:30837702..30837744,-p2@BC005624
Mm9::chr2:30837848..30837868,+p2@Usp20
Mm9::chr2:35835276..35835320,-p1@Ttll11
Mm9::chr2:35835329..35835345,-p2@Ttll11
Mm9::chr2:37278526..37278575,-p2@Rc3h2
Mm9::chr2:91367100..91367144,+p2@Ckap5
Mm9::chr3:106487861..106487939,+p2@4933421E11Rik
Mm9::chr3:116210953..116210988,-p2@Rtcd1
Mm9::chr3:116210989..116211037,-p1@Rtcd1
Mm9::chr3:121948394..121948468,+p3@Gclm
Mm9::chr3:57651612..57651642,-p3@Pfn2
Mm9::chr3:87710452..87710529,+p2@Hdgf
Mm9::chr3:94114017..94114066,+p1@Them4
Mm9::chr3:94288291..94288330,+p3@Celf3
Mm9::chr3:95462973..95463005,+p@chr3:95462973..95463005
+
Mm9::chr3:95976430..95976453,+p2@Sf3b4
Mm9::chr4:106851023..106851071,+p4@Tmem59
Mm9::chr4:117587641..117587659,-p4@Ipo13
Mm9::chr4:119088099..119088127,-p2@Ccdc30
Mm9::chr4:12098960..12098998,-p1@Fam92a
Mm9::chr4:124762355..124762366,+p2@Meaf6
Mm9::chr4:124762380..124762417,+p1@Meaf6
Mm9::chr4:147822673..147822707,+p1@Mtor
Mm9::chr4:149050175..149050233,-p3@Pik3cd
Mm9::chr4:151712728..151712818,+p1@Chd5
Mm9::chr4:40669494..40669545,+p1@Dnaja1
Mm9::chr4:41516437..41516448,-p3@2310028H24Rik
Mm9::chr4:41721037..41721049,-p1@1700008B15Rik
p1@Ccl27a
p1@Gm2091
Mm9::chr4:43591696..43591781,-p1@Gba2
Mm9::chr4:77857918..77857953,+p1@ENSMUST00000173049
Mm9::chr4:83131690..83131728,-p4@Psip1
Mm9::chr4:83131749..83131794,-p3@Psip1
Mm9::chr4:83132145..83132180,-p8@Psip1
Mm9::chr5:114830514..114830529,-p2@Kctd10
Mm9::chr5:115751120..115751183,+p1@ENSMUST00000124378
p1@ENSMUST00000144202
p1@ENSMUST00000149609
Mm9::chr5:122822239..122822399,-p1@1500011H22Rik
Mm9::chr5:122952292..122952303,-p4@Atp2a2
Mm9::chr5:123300163..123300174,+p4@Rnf34
Mm9::chr5:136674784..136674840,-p1@Prkrip1
Mm9::chr5:137395208..137395251,+p2@4933404O12Rik
Mm9::chr5:145726765..145726778,-p2@Smurf1
Mm9::chr5:149740557..149740620,-p1@Katnal1
Mm9::chr5:23606396..23606487,+p1@Klhl7
Mm9::chr5:29895978..29895988,+p6@Ube3c
Mm9::chr5:31116944..31116990,+p4@Mapre3
Mm9::chr5:3648045..3648074,-p2@Gatad1
Mm9::chr5:93635468..93635496,-p1@Ccni
Mm9::chr6:106750045..106750089,-p1@Crbn
Mm9::chr6:71781435..71781446,+p3@Immt
Mm9::chr6:72908417..72908423,-p5@Tmsb10
Mm9::chr6:83106347..83106381,-p1@Wdr54
Mm9::chr6:89545541..89545639,-p1@Chchd6
Mm9::chr6:95983269..95983291,-p@chr6:95983269..95983291
-
Mm9::chr7:17200198..17200209,-p8@Grlf1
Mm9::chr7:17509224..17509240,-p3@Calm2
p4@Calm1
p4@Calm3
Mm9::chr7:17509250..17509375,-p3@Calm3
Mm9::chr7:29062736..29062789,+p1@Eid2b
Mm9::chr7:31320101..31320112,-p3@Arhgap33
Mm9::chr7:3390522..3390572,+p@chr7:3390522..3390572
+
Mm9::chr7:5012959..5012985,+p@chr7:5012959..5012985
+
Mm9::chr7:52184780..52184891,-p1@Ap2a1
Mm9::chr7:74367460..74367521,+p1@Lysmd4
Mm9::chr7:89079163..89079174,-p5@Hdgfrp3
Mm9::chr7:89079178..89079197,-p3@Hdgfrp3
Mm9::chr7:89319684..89319711,+p2@Sh3gl3
Mm9::chr7:89319712..89319740,+p1@Sh3gl3
Mm9::chr8:108225524..108225593,+p2@Pard6a
Mm9::chr8:109555195..109555250,+p1@Vps4a
Mm9::chr8:114457661..114457716,-p1@Tmem231
Mm9::chr8:121868390..121868436,+p1@Hsbp1
Mm9::chr8:121868832..121868873,+p@chr8:121868832..121868873
+
Mm9::chr8:121869521..121869532,+p@chr8:121869521..121869532
+
Mm9::chr8:34710354..34710383,+p4@Ppp2cb
Mm9::chr8:3676457..3676501,+p2@Trappc5
Mm9::chr8:40068881..40068920,+p2@Tusc3
Mm9::chr8:4166556..4166593,+p1@Evi5l
Mm9::chr8:55809827..55809847,-p2@Wdr17
Mm9::chr8:73987499..73987579,-p1@Abhd8
Mm9::chr8:93657926..93657937,-p2@Aktip
Mm9::chr9:103965706..103965745,+p3@Acad11
Mm9::chr9:106349915..106350020,-p1@Abhd14a
Mm9::chr9:109834278..109834302,+p6@Mtap4
Mm9::chr9:35366090..35366103,-p4@Ddx25
Mm9::chr9:50583452..50583474,+p2@Alg9
Mm9::chr9:65756586..65756605,-p2@Trip4
Mm9::chr9:86465572..86465628,+p1@Rwdd2a
Mm9::chrX:130593676..130593752,+p2@Cstf2
Mm9::chrX:156940350..156940417,+p1@Phka2
Mm9::chrX:20265684..20265696,+p4@Cdk16


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005622intracellular3.00859808215338e-06
GO:0044424intracellular part3.9164674738498e-06
GO:0005737cytoplasm3.64177511690718e-05
GO:0043229intracellular organelle0.000377330422883986
GO:0043226organelle0.000377330422883986
GO:0000166nucleotide binding0.000643296478093539
GO:0017076purine nucleotide binding0.00583797751059316
GO:0009408response to heat0.00643951855772535
GO:0032555purine ribonucleotide binding0.00643951855772535
GO:0032553ribonucleotide binding0.00643951855772535
GO:0030554adenyl nucleotide binding0.00940839382694043
GO:0005524ATP binding0.0106707211221277
GO:0050220prostaglandin-E synthase activity0.011586711972206
GO:0032559adenyl ribonucleotide binding0.011586711972206
GO:0043231intracellular membrane-bound organelle0.011600910144802
GO:0015630microtubule cytoskeleton0.011600910144802
GO:0043227membrane-bound organelle0.011600910144802
GO:0005515protein binding0.0137044517801558
GO:0009266response to temperature stimulus0.0164065521525828
GO:0005856cytoskeleton0.0198427216303992
GO:0005874microtubule0.0198427216303992
GO:0016874ligase activity0.0217218784494508
GO:0005875microtubule associated complex0.0342991866613365
GO:0051099positive regulation of binding0.0416557686954622
GO:0001516prostaglandin biosynthetic process0.0445855532350853
GO:0046457prostanoid biosynthetic process0.0445855532350853
GO:0006378mRNA polyadenylation0.0445855532350853



Relative expression of the co-expression cluster over median <br>Analyst:


"{{{coexpression_dpi_cluster_scores_median}}}" is not a number.

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:60&oldid=2141796"