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MCL coexpression mm9:60

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Phase1 CAGE Peaks

  Short description
Mm9::chr10:115910684..115910700,- p3@Kcnmb4
Mm9::chr10:127496152..127496209,+ p2@Gm9769
p2@LOC100048119
p2@Ptges3
Mm9::chr10:13272946..13272959,- p4@Pex3
Mm9::chr10:13272961..13272972,- p6@Pex3
Mm9::chr10:20672388..20672399,+ p2@Ahi1
Mm9::chr10:53471000..53471072,- p1@Fam184a
Mm9::chr10:70022161..70022178,- p@chr10:70022161..70022178
-
Mm9::chr10:77875694..77875766,- p1@Rrp1
Mm9::chr10:80500003..80500040,- p2@Slc39a3
Mm9::chr10:80522879..80522949,- p1@Sgta
Mm9::chr10:80568663..80568677,+ p2@Map2k2
Mm9::chr10:93498534..93498561,- p2@Vezt
Mm9::chr11:102994617..102994646,+ p2@Hexim2
Mm9::chr11:105898181..105898238,+ p1@Dcaf7
Mm9::chr11:106474305..106474321,- p3@Tex2
Mm9::chr11:109287254..109287266,+ p5@Amz2
Mm9::chr11:116976447..116976500,+ p2@Sec14l1
Mm9::chr11:120209493..120209503,- p@chr11:120209493..120209503
-
Mm9::chr11:120209518..120209559,- -
p@chr11:120209518..120209559
Mm9::chr11:53380863..53380930,+ p1@Kif3a
Mm9::chr11:61668520..61668527,- p4@Ulk2
Mm9::chr11:61668528..61668571,- p2@Ulk2
Mm9::chr11:62545367..62545412,- p1@Zfp287
Mm9::chr11:69715350..69715396,+ p1@Neurl4
Mm9::chr11:83116143..83116305,+ p1@Ap2b1
Mm9::chr11:86887575..86887618,- p2@Gdpd1
Mm9::chr11:86887622..86887633,- p3@Gdpd1
Mm9::chr11:86940674..86940766,+ p2@Trim37
Mm9::chr12:103981835..103981898,- p2@Moap1
Mm9::chr12:111933974..111934018,- p3@Hsp90aa1
Mm9::chr12:111934070..111934086,- p6@Hsp90aa1
Mm9::chr12:111934458..111934472,- p8@Hsp90aa1
Mm9::chr12:11462858..11462864,+ p1@Rad51ap2
Mm9::chr12:13256004..13256030,- p2@Ddx1
Mm9::chr12:14158877..14158888,- p2@Fam84a
Mm9::chr12:21423452..21423466,- p2@LOC100503129
p2@Ywhaq
Mm9::chr12:21549145..21549176,+ p@chr12:21549145..21549176
+
Mm9::chr12:27845363..27845387,- p2@ENSMUST00000063754
Mm9::chr12:33832620..33832635,+ p4@Atxn7l1
Mm9::chr12:52930723..52930790,- p5@Hectd1
Mm9::chr12:60112962..60112979,- p3@Sec23a
Mm9::chr12:60112983..60113021,- p2@Sec23a
Mm9::chr12:77505372..77505383,+ p3@Hspa2
Mm9::chr12:80273596..80273659,- p2@Vti1b
Mm9::chr12:81537394..81537443,- p3@Dcaf5
Mm9::chr12:88288381..88288431,+ p2@2310044G17Rik
Mm9::chr13:100114575..100114586,- p@chr13:100114575..100114586
-
Mm9::chr13:107812463..107812474,- p3@Kif2a
Mm9::chr13:41345210..41345232,+ p1@BC024659
Mm9::chr13:41345245..41345319,+ p3@BC024659
Mm9::chr13:42147117..42147142,+ p3@Hivep1
Mm9::chr13:55585061..55585114,- p2@Dbn1
Mm9::chr13:59658591..59658707,- p1@Agtpbp1
Mm9::chr13:59658715..59658733,- p2@Agtpbp1
Mm9::chr14:116394165..116394169,+ p@chr14:116394165..116394169
+
Mm9::chr14:22569747..22569758,+ p2@Samd8
Mm9::chr14:27783744..27783782,- p2@Appl1
Mm9::chr14:32064640..32064716,+ p1@Bap1
Mm9::chr14:55482892..55482988,- p1@Homez
Mm9::chr14:56364484..56364495,- p4@Dhrs1
Mm9::chr14:62175583..62175618,- p2@6330409N04Rik
Mm9::chr14:62175620..62175634,- p3@6330409N04Rik
Mm9::chr14:62175718..62175727,- p6@6330409N04Rik
Mm9::chr14:64162751..64162762,- p4@Mtmr9
Mm9::chr14:64162768..64162828,- p1@Mtmr9
Mm9::chr15:39029247..39029262,+ p@chr15:39029247..39029262
+
Mm9::chr15:71558315..71558339,- p3@Fam135b
Mm9::chr15:72891434..72891526,- p1@Trappc9
Mm9::chr15:79489319..79489363,- p1@4933432B09Rik
Mm9::chr15:8119031..8119066,+ p1@2410089E03Rik
Mm9::chr15:81230225..81230262,- p3@St13
Mm9::chr15:81230483..81230523,- p4@St13
Mm9::chr15:83341291..83341336,- p1@Ttll1
Mm9::chr15:84388206..84388305,- p1@Ldoc1l
Mm9::chr15:9001398..9001473,+ p@chr15:9001398..9001473
+
Mm9::chr15:98593658..98593669,- p3@Arf3
Mm9::chr15:99082360..99082399,- p1@Mcrs1
Mm9::chr16:15594602..15594624,- p1@Gm6565
p1@Ube2v2
Mm9::chr16:65563029..65563092,+ p@chr16:65563029..65563092
+
Mm9::chr16:90220953..90220970,+ p2@Sod1
Mm9::chr17:27085561..27085585,+ p@chr17:27085561..27085585
+
Mm9::chr17:27760386..27760440,- p1@Nudt3
Mm9::chr17:28314075..28314159,+ p1@Zfp523
Mm9::chr17:45570511..45570532,- p5@Cdc5l
Mm9::chr17:46390866..46390927,+ p1@Gm88
Mm9::chr17:46624590..46624631,- p1@Ttbk1
Mm9::chr18:23200142..23200172,- p1@Nol4
Mm9::chr18:25327363..25327385,- p4@5730494M16Rik
Mm9::chr18:35721834..35721851,+ p2@Matr3
Mm9::chr18:35721854..35721914,+ p1@Matr3
Mm9::chr18:35722088..35722144,+ p@chr18:35722088..35722144
+
Mm9::chr18:35731638..35731653,+ p@chr18:35731638..35731653
+
Mm9::chr18:46471465..46471488,- p2@Ccdc112
Mm9::chr18:61896994..61897030,- p@chr18:61896994..61897030
-
Mm9::chr19:31157472..31157536,+ p1@Cstf2t
Mm9::chr19:3979984..3980016,+ p@chr19:3979984..3980016
+
Mm9::chr19:42160828..42160865,- p1@Morn4
Mm9::chr19:45857711..45857736,- p3@Mgea5
Mm9::chr19:46226995..46227004,+ p2@Gbf1
Mm9::chr19:46470212..46470246,- p1@Actr1a
Mm9::chr19:46647586..46647697,- p1@Arl3
Mm9::chr19:5490475..5490487,+ p2@Cfl1
p2@LOC100048522
Mm9::chr19:60019499..60019541,- p2@Rab11fip2
Mm9::chr19:60019550..60019581,- p1@Rab11fip2
Mm9::chr1:121734043..121734132,- p2@Ptpn4
Mm9::chr1:123224353..123224380,- p2@Insig2
Mm9::chr1:138242651..138242722,- p1@Camsap2
Mm9::chr1:152239924..152239979,+ p2@Tpr
Mm9::chr1:154613411..154613449,- p2@Rgl1
Mm9::chr1:162723039..162723100,- p3@Rabgap1l
Mm9::chr1:163081115..163081119,+ p@chr1:163081115..163081119
+
Mm9::chr1:165709725..165709762,+ p3@Kifap3
Mm9::chr1:16646989..16647003,- p2@LOC100045866
p3@Tceb1
Mm9::chr1:172105090..172105132,- p4@Uap1
Mm9::chr1:179726794..179726804,- p5@Adss
Mm9::chr1:179726805..179726808,- p9@Adss
Mm9::chr1:179726824..179726831,- p8@Adss
Mm9::chr1:37486916..37486925,- p4@6330578E17Rik
Mm9::chr1:57434437..57434533,+ p1@1700066M21Rik
Mm9::chr1:60099936..60100019,- p1@Ica1l
Mm9::chr1:63223625..63223628,+ p4@Eef1b2
Mm9::chr1:67085398..67085446,- p1@Lancl1
Mm9::chr1:75139336..75139347,+ p3@Fam134a
Mm9::chr1:75139387..75139398,+ p4@Fam134a
Mm9::chr1:75139402..75139411,+ p5@Fam134a
Mm9::chr1:75176800..75176883,- p2@Abcb6
Mm9::chr1:75232975..75233004,+ p4@Dnajb2
Mm9::chr2:103867914..103867937,+ p2@Fbxo3
Mm9::chr2:120676164..120676181,- p3@Ttbk2
Mm9::chr2:131178593..131178625,- p2@Rnf24
Mm9::chr2:134469891..134469902,- p4@Tmx4
Mm9::chr2:140221182..140221201,+ p1@Macrod2
Mm9::chr2:150574772..150574883,+ p1@Entpd6
Mm9::chr2:21127346..21127408,+ p1@Thnsl1
Mm9::chr2:26244890..26244901,+ p2@Pmpca
Mm9::chr2:28980492..28980568,+ p2@Setx
Mm9::chr2:29904347..29904411,- p1@Wdr34
Mm9::chr2:29921939..29921981,+ p1@Gm9531
p1@LOC100504508
p2@Set
Mm9::chr2:30271287..30271294,- p11@Crat
Mm9::chr2:30837702..30837744,- p2@BC005624
Mm9::chr2:30837848..30837868,+ p2@Usp20
Mm9::chr2:35835276..35835320,- p1@Ttll11
Mm9::chr2:35835329..35835345,- p2@Ttll11
Mm9::chr2:37278526..37278575,- p2@Rc3h2
Mm9::chr2:91367100..91367144,+ p2@Ckap5
Mm9::chr3:106487861..106487939,+ p2@4933421E11Rik
Mm9::chr3:116210953..116210988,- p2@Rtcd1
Mm9::chr3:116210989..116211037,- p1@Rtcd1
Mm9::chr3:121948394..121948468,+ p3@Gclm
Mm9::chr3:57651612..57651642,- p3@Pfn2
Mm9::chr3:87710452..87710529,+ p2@Hdgf
Mm9::chr3:94114017..94114066,+ p1@Them4
Mm9::chr3:94288291..94288330,+ p3@Celf3
Mm9::chr3:95462973..95463005,+ p@chr3:95462973..95463005
+
Mm9::chr3:95976430..95976453,+ p2@Sf3b4
Mm9::chr4:106851023..106851071,+ p4@Tmem59
Mm9::chr4:117587641..117587659,- p4@Ipo13
Mm9::chr4:119088099..119088127,- p2@Ccdc30
Mm9::chr4:12098960..12098998,- p1@Fam92a
Mm9::chr4:124762355..124762366,+ p2@Meaf6
Mm9::chr4:124762380..124762417,+ p1@Meaf6
Mm9::chr4:147822673..147822707,+ p1@Mtor
Mm9::chr4:149050175..149050233,- p3@Pik3cd
Mm9::chr4:151712728..151712818,+ p1@Chd5
Mm9::chr4:40669494..40669545,+ p1@Dnaja1
Mm9::chr4:41516437..41516448,- p3@2310028H24Rik
Mm9::chr4:41721037..41721049,- p1@1700008B15Rik
p1@Ccl27a
p1@Gm2091
Mm9::chr4:43591696..43591781,- p1@Gba2
Mm9::chr4:77857918..77857953,+ p1@ENSMUST00000173049
Mm9::chr4:83131690..83131728,- p4@Psip1
Mm9::chr4:83131749..83131794,- p3@Psip1
Mm9::chr4:83132145..83132180,- p8@Psip1
Mm9::chr5:114830514..114830529,- p2@Kctd10
Mm9::chr5:115751120..115751183,+ p1@ENSMUST00000124378
p1@ENSMUST00000144202
p1@ENSMUST00000149609
Mm9::chr5:122822239..122822399,- p1@1500011H22Rik
Mm9::chr5:122952292..122952303,- p4@Atp2a2
Mm9::chr5:123300163..123300174,+ p4@Rnf34
Mm9::chr5:136674784..136674840,- p1@Prkrip1
Mm9::chr5:137395208..137395251,+ p2@4933404O12Rik
Mm9::chr5:145726765..145726778,- p2@Smurf1
Mm9::chr5:149740557..149740620,- p1@Katnal1
Mm9::chr5:23606396..23606487,+ p1@Klhl7
Mm9::chr5:29895978..29895988,+ p6@Ube3c
Mm9::chr5:31116944..31116990,+ p4@Mapre3
Mm9::chr5:3648045..3648074,- p2@Gatad1
Mm9::chr5:93635468..93635496,- p1@Ccni
Mm9::chr6:106750045..106750089,- p1@Crbn
Mm9::chr6:71781435..71781446,+ p3@Immt
Mm9::chr6:72908417..72908423,- p5@Tmsb10
Mm9::chr6:83106347..83106381,- p1@Wdr54
Mm9::chr6:89545541..89545639,- p1@Chchd6
Mm9::chr6:95983269..95983291,- p@chr6:95983269..95983291
-
Mm9::chr7:17200198..17200209,- p8@Grlf1
Mm9::chr7:17509224..17509240,- p3@Calm2
p4@Calm1
p4@Calm3
Mm9::chr7:17509250..17509375,- p3@Calm3
Mm9::chr7:29062736..29062789,+ p1@Eid2b
Mm9::chr7:31320101..31320112,- p3@Arhgap33
Mm9::chr7:3390522..3390572,+ p@chr7:3390522..3390572
+
Mm9::chr7:5012959..5012985,+ p@chr7:5012959..5012985
+
Mm9::chr7:52184780..52184891,- p1@Ap2a1
Mm9::chr7:74367460..74367521,+ p1@Lysmd4
Mm9::chr7:89079163..89079174,- p5@Hdgfrp3
Mm9::chr7:89079178..89079197,- p3@Hdgfrp3
Mm9::chr7:89319684..89319711,+ p2@Sh3gl3
Mm9::chr7:89319712..89319740,+ p1@Sh3gl3
Mm9::chr8:108225524..108225593,+ p2@Pard6a
Mm9::chr8:109555195..109555250,+ p1@Vps4a
Mm9::chr8:114457661..114457716,- p1@Tmem231
Mm9::chr8:121868390..121868436,+ p1@Hsbp1
Mm9::chr8:121868832..121868873,+ p@chr8:121868832..121868873
+
Mm9::chr8:121869521..121869532,+ p@chr8:121869521..121869532
+
Mm9::chr8:34710354..34710383,+ p4@Ppp2cb
Mm9::chr8:3676457..3676501,+ p2@Trappc5
Mm9::chr8:40068881..40068920,+ p2@Tusc3
Mm9::chr8:4166556..4166593,+ p1@Evi5l
Mm9::chr8:55809827..55809847,- p2@Wdr17
Mm9::chr8:73987499..73987579,- p1@Abhd8
Mm9::chr8:93657926..93657937,- p2@Aktip
Mm9::chr9:103965706..103965745,+ p3@Acad11
Mm9::chr9:106349915..106350020,- p1@Abhd14a
Mm9::chr9:109834278..109834302,+ p6@Mtap4
Mm9::chr9:35366090..35366103,- p4@Ddx25
Mm9::chr9:50583452..50583474,+ p2@Alg9
Mm9::chr9:65756586..65756605,- p2@Trip4
Mm9::chr9:86465572..86465628,+ p1@Rwdd2a
Mm9::chrX:130593676..130593752,+ p2@Cstf2
Mm9::chrX:156940350..156940417,+ p1@Phka2
Mm9::chrX:20265684..20265696,+ p4@Cdk16


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0005622intracellular3.00859808215338e-06
GO:0044424intracellular part3.9164674738498e-06
GO:0005737cytoplasm3.64177511690718e-05
GO:0043229intracellular organelle0.000377330422883986
GO:0043226organelle0.000377330422883986
GO:0000166nucleotide binding0.000643296478093539
GO:0017076purine nucleotide binding0.00583797751059316
GO:0009408response to heat0.00643951855772535
GO:0032555purine ribonucleotide binding0.00643951855772535
GO:0032553ribonucleotide binding0.00643951855772535
GO:0030554adenyl nucleotide binding0.00940839382694043
GO:0005524ATP binding0.0106707211221277
GO:0050220prostaglandin-E synthase activity0.011586711972206
GO:0032559adenyl ribonucleotide binding0.011586711972206
GO:0043231intracellular membrane-bound organelle0.011600910144802
GO:0015630microtubule cytoskeleton0.011600910144802
GO:0043227membrane-bound organelle0.011600910144802
GO:0005515protein binding0.0137044517801558
GO:0009266response to temperature stimulus0.0164065521525828
GO:0005856cytoskeleton0.0198427216303992
GO:0005874microtubule0.0198427216303992
GO:0016874ligase activity0.0217218784494508
GO:0005875microtubule associated complex0.0342991866613365
GO:0051099positive regulation of binding0.0416557686954622
GO:0001516prostaglandin biosynthetic process0.0445855532350853
GO:0046457prostanoid biosynthetic process0.0445855532350853
GO:0006378mRNA polyadenylation0.0445855532350853



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Uber Anatomy
Ontology termp-valuen
central nervous system4.65e-2973
neurectoderm8.67e-2964
neural plate8.67e-2964
presumptive neural plate8.67e-2964
nervous system1.43e-2875
ectoderm-derived structure2.23e-2795
ectoderm2.23e-2795
presumptive ectoderm2.23e-2795
regional part of nervous system1.72e-2654
ecto-epithelium2.27e-2573
neural tube3.47e-2552
neural rod3.47e-2552
future spinal cord3.47e-2552
neural keel3.47e-2552
structure with developmental contribution from neural crest4.85e-2592
pre-chordal neural plate3.16e-2349
brain2.26e-2247
future brain2.26e-2247
regional part of brain9.30e-2246
anterior neural tube3.82e-2040
regional part of forebrain1.56e-1939
forebrain1.56e-1939
future forebrain1.56e-1939
gray matter1.39e-1834
brain grey matter6.28e-1629
regional part of telencephalon6.28e-1629
telencephalon6.28e-1629
cerebral cortex1.33e-1121
cerebral hemisphere1.33e-1121
pallium1.33e-1121
regional part of cerebral cortex9.01e-1017
occipital lobe6.08e-0810
visual cortex6.08e-0810
neocortex6.08e-0810
multi-cellular organism1.42e-07333
tube2.32e-07114
embryo7.35e-07320
anatomical conduit8.26e-07122


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.130.8115
MA0004.10.77291
MA0006.18.73295
MA0007.10.0976155
MA0009.10.107813
MA0014.136.2666
MA0017.10.0730233
MA0019.11.4526
MA0024.10.501849
MA0025.10.382553
MA0027.11.08072
MA0028.111.9134
MA0029.10.0201674
MA0030.10.0676674
MA0031.10.115934
MA0038.10.290857
MA0040.10.117865
MA0041.10.0829137
MA0042.10.0390308
MA0043.10.639626
MA0046.10.0502433
MA0048.16.52872
MA0050.10.0241545
MA0051.10.0325451
MA0052.10.00866889
MA0055.11.81872
MA0056.10
MA0057.11.72135
MA0058.10.959814
MA0059.10.499515
MA0060.16.0074
MA0061.10.536817
MA0063.10
MA0066.10.009196
MA0067.10.271199
MA0068.10.103991
MA0069.10.124916
MA0070.10.0411654
MA0071.10.0237839
MA0072.10.109968
MA0073.10.312729
MA0074.10.111148
MA0076.18.2666
MA0077.10.0936362
MA0078.10.0211062
MA0081.10.0705422
MA0083.10.0774545
MA0084.10.24887
MA0087.10.153939
MA0088.16.19076
MA0089.10
MA0090.10.11151
MA0091.10.00616925
MA0092.10.112082
MA0093.11.00881
MA0095.10
MA0098.10
MA0100.15.90248
MA0101.10.184089
MA0103.10.0926239
MA0105.11.19173
MA0106.10.612964
MA0107.10.295252
MA0108.20.132647
MA0109.10
MA0111.10.502436
MA0113.10.0387209
MA0114.10.847032
MA0115.10.202766
MA0116.11.08998
MA0117.10.847196
MA0119.10.559927
MA0122.10.369733
MA0124.10.060687
MA0125.10.0399205
MA0130.10
MA0131.16.83701
MA0132.10
MA0133.10
MA0135.10.242509
MA0136.10.0422369
MA0139.13.81331
MA0140.10.0108532
MA0141.10.0120409
MA0142.10.0124707
MA0143.10.169796
MA0144.10.0121598
MA0145.10.709309
MA0146.128.7826
MA0147.15.29663
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MA0138.21.36558
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MA0112.21.40415
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