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MCL coexpression mm9:2170

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Phase1 CAGE Peaks

 Short description
Mm9::chr16:19883954..19883965,-p4@A930003A15Rik
Mm9::chr17:25257732..25257748,+p1@Ptx4
Mm9::chr3:89876563..89876579,+p3@Tpm3
Mm9::chr5:137165168..137165170,+p@chr5:137165168..137165170
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0032154cleavage furrow0.00300407238992677
GO:0002102podosome0.00300407238992677
GO:0005862muscle thin filament tropomyosin0.00300407238992677
GO:0032153cell division site0.00300407238992677
GO:0032155cell division site part0.00300407238992677
GO:0031941filamentous actin0.00300407238992677
GO:0030426growth cone0.00437736262532187
GO:0030427site of polarized growth0.00437736262532187
GO:0005865striated muscle thin filament0.00437736262532187
GO:0030863cortical cytoskeleton0.00437736262532187
GO:0005884actin filament0.00538392194558304
GO:0044448cell cortex part0.00600814477985354
GO:0006937regulation of muscle contraction0.00653633333192858
GO:0005938cell cortex0.00864437157101377
GO:0030017sarcomere0.0106859146441681
GO:0044449contractile fiber part0.0106859146441681
GO:0030016myofibril0.0106859146441681
GO:0043292contractile fiber0.0106859146441681
GO:0003012muscle system process0.0106859146441681
GO:0006936muscle contraction0.0106859146441681
GO:0043005neuron projection0.0142233631523063
GO:0015629actin cytoskeleton0.0222379384708865
GO:0003779actin binding0.0270926280135011
GO:0051239regulation of multicellular organismal process0.0298261472999872
GO:0008092cytoskeletal protein binding0.0344009203966471
GO:0042995cell projection0.0360488686791213
GO:0044430cytoskeletal part0.0495910362781562



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
eye1.91e-099
camera-type eye1.91e-099
simple eye1.91e-099
immature eye1.91e-099
ocular region1.91e-099
visual system1.91e-099
face1.91e-099
optic cup1.91e-099
optic vesicle1.91e-099
eye primordium1.91e-099
subdivision of head6.06e-0911
sense organ5.37e-0812
sensory system5.37e-0812
entire sense organ system5.37e-0812
hindlimb bud5.80e-085
stylopod5.80e-085
lower limb segment5.80e-085
multi-limb segment region5.80e-085
pelvic appendage5.80e-085
limb segment5.80e-085
paired limb/fin segment5.80e-085
pelvic appendage bud5.80e-085
subdivision of organism along appendicular axis5.80e-085
leg5.80e-085
hindlimb5.80e-085
hindlimb stylopod5.80e-085
posterior region of body5.80e-085
pelvic complex5.80e-085
hindlimb/pelvic fin field5.80e-085
head3.37e-0713


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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